mRNA_P-wetherbeei_contig794.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig794.3.1
Unique NamemRNA_P-wetherbeei_contig794.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig794.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig794contigP-wetherbeei_contig794:3495..4675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size871
Hectar predicted targeting categorymitochondrion
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.4945178-UTR-P-wetherbeei_contig794:3494..39121683187010.4945178-UTR-P-wetherbeei_contig794:3494..3912Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig794 3495..3912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.5053964-CDS-P-wetherbeei_contig794:3912..42851683187010.5053964-CDS-P-wetherbeei_contig794:3912..4285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 3913..4285 -
1683187010.515618-CDS-P-wetherbeei_contig794:4595..46751683187010.515618-CDS-P-wetherbeei_contig794:4595..4675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 4596..4675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig794.3.1prot_P-wetherbeei_contig794.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig794 3913..4675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig794.3.1

>prot_P-wetherbeei_contig794.3.1 ID=prot_P-wetherbeei_contig794.3.1|Name=mRNA_P-wetherbeei_contig794.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
TRSTWRRRWWWWRACCSASPWRPPARRSAPRPWLVLWRVAPAALTGHCWA
RSFWLGSAHSSAVASAPASFLHRARPRPSEHRRPKRNHGKIWKGPFSQAG
RLGFLYQRMRRRVERGASNADARGRTFSRGRRGSPHDTFNHLSFPSYGCA
*
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mRNA from alignment at P-wetherbeei_contig794:3495..4675-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig794.3.1 ID=mRNA_P-wetherbeei_contig794.3.1|Name=mRNA_P-wetherbeei_contig794.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1181bp|location=Sequence derived from alignment at P-wetherbeei_contig794:3495..4675- (Phaeothamnion wetherbeei SAG_119_79)
ACACGATCGACCTGGCGACGGCGGTGGTGGTGGTGGCGGGCGTGCTGCTC
GGCTTCCCCATGGCGGCCACCTGCGCGCAGGTCTGTTTGCATTGTCCTCG
GTTCGCGTCGACGCTGGCTGCCAGCAAGCGGCTTTGGCTTTGGTTTTTCC
AGAGGCTTGTTGATGGGCTGTGTTTGTGAGCTTGGGCGGCTGGCTCGTTC
TCAGCCGTGGGTGACTGTCGGTGGCAGCTGGTTTGTTGGTCCAGCCTTCA
GCAGCGCCTGTCAGTCCGTGCACAAGCTAACGTGTGCATGCCGCCGCTGG
CAAGTCCTGTCCCTCACACCCTCATCCCCCTCCGCGTCTTCGACGCCACC
GCCGGCTTCGCATTCACCCTCTCCCGCCTCGACCTCTCAGGTCGGCGCCA
CGGCCATGGTTGGTTTTATGGAGGGTGGCTCCGGCGGCTTTAACGGGCCA
TTGCTGGGCAAGATCCTTTTGGCTTGGGTCGGCACATTCGTCTGCTGTGG
CGTCGGCGCCGGCCTCCTTTTTGCACAGGGCACGGCCGCGCCCAAGTGAA
CACCGGCGACCGAAGAGAAACCACGGCAAGATATGGAAGGGCCCGTTTTC
ACAGGCGGGCCGGCTTGGTTTTCTGTATCAACGAATGCGGCGGCGGGTGG
AACGCGGTGCTTCCAACGCTGACGCCCGCGGCCGCACATTTAGCCGTGGC
AGAAGAGGTTCGCCTCATGACACATTTAACCACCTTTCTTTTCCGAGTTA
CGGGTGCGCATAGCCGGGAGGAGAAAAATGCTTCGCCAGAGTTTAGACAT
TCAGCGGCGACAGTCCGGCAGTGGTGGCAGCCATAGCAGCGAGGCGGAGG
CGGCGGCGGCGACAGGAGTGCAAAGGAGAATGCTTACTTAGAATTTGTCT
TTCCGTGGTTTTGAGATCGGTTGGTGTGTTGAGAGAATGAAGACCATCTC
ATCTCCGCGGGCGGCGGGGGCGTGTTTGTGCGGTTTTTTCGTGGGTTCTT
CGTCGAAGATTGGGACACGGCAGTAAATGCTCGGCGAAATGGAAGCTGCT
TTTGCTGCAAGGGAAGGTGCCGCTTCACCAGTGTGTGGTCAGTATGCGAA
TTGAGAGATGGCACCGCCTCTCGCCTGCTTTTAGAAGGCGGGCGGGAAAG
CCGGCCGCTCATTTCGCAGAAGAGGAATGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig794:3495..4675-

>mRNA_P-wetherbeei_contig794.3.1 ID=mRNA_P-wetherbeei_contig794.3.1|Name=mRNA_P-wetherbeei_contig794.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig794:3495..4675- (Phaeothamnion wetherbeei SAG_119_79)
ACACGATCGACCTGGCGACGGCGGTGGTGGTGGTGGCGGGCGTGCTGCTC
GGCTTCCCCATGGCGGCCACCTGCGCGCAGGTCGGCGCCACGGCCATGGT
TGGTTTTATGGAGGGTGGCTCCGGCGGCTTTAACGGGCCATTGCTGGGCA
AGATCCTTTTGGCTTGGGTCGGCACATTCGTCTGCTGTGGCGTCGGCGCC
GGCCTCCTTTTTGCACAGGGCACGGCCGCGCCCAAGTGAACACCGGCGAC
CGAAGAGAAACCACGGCAAGATATGGAAGGGCCCGTTTTCACAGGCGGGC
CGGCTTGGTTTTCTGTATCAACGAATGCGGCGGCGGGTGGAACGCGGTGC
TTCCAACGCTGACGCCCGCGGCCGCACATTTAGCCGTGGCAGAAGAGGTT
CGCCTCATGACACATTTAACCACCTTTCTTTTCCGAGTTACGGGTGCGCA
TAG
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