mRNA_P-wetherbeei_contig7936.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7936.2.1
Unique NamemRNA_P-wetherbeei_contig7936.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: A0A7S2XWE5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 MTYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLI 174
            MTY +M+  AL  LK+R GSS QAIK +I+ NN+D++  FL HALR ALKKG++ G +
Sbjct:    1 MTYFDMIKAALLALKDRTGSSPQAIKAYILANNKDVK--FLQHALRAALKKGVESGKL 56          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: A0A7S4DAL4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL4_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 1.930e-9
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 MTYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPEDKKTRFKLT 213
            MTY +M+++A+  LK+R GSS QAIK +I+ N  D++  F  HALR ALKKG++ G +E     K  FKL+
Sbjct:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVK--FAQHALRLALKKGVESGKLEKV---KASFKLS 66          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: UPI0003F06104 (sperm-specific protein PHI-2B-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06104)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-7
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   10 LEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPED 189
            ++MV+EAL+ LK+R G S QAIK +I+T+   +  T L  +LR ALK G++ G++  P+D
Sbjct:   23 MDMVVEALTTLKDRKGISVQAIKTYILTHYTTVSPTHLTSSLRRALKTGLESGMLVRPKD 82          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.760e-7
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    4 TYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPEDKKTRFKLTPEGRK 228
            TY  MV +A+  LKERNGSS QAIKK I      +   F PH +R+ALKKG++ G        K  +KL+ E +K
Sbjct:    7 TYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLN--FTPHQMRSALKKGVESGKFIKM---KASYKLSAEAKK 76          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.790e-7
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    4 TYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPEDKKTRFKLTPEGRK 228
            TY EM   A+  LKERNGSS  AIKKHI      +   FLPH LR ALKKG + G        K  +K++PE +K
Sbjct:    3 TYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLN--FLPHQLRGALKKGTETGTFIKV---KASYKVSPEAKK 72          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.010e-7
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    4 TYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPEDKKTRFKLTPEGRK 228
            TY  MV +A+  LKERNGSS QAIKK I      +   F PH +R ALKKG++ G        K  +KL+PE +K
Sbjct:  100 TYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLN--FTPHQMRGALKKGVESGKFIKM---KASYKLSPEAKK 169          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.340e-7
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    4 TYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPED--KKTRFKLTPEGRKEEVEKLG 249
            TY EM +EA+  LKERNGSS  AIKKHI  +   +  TF  H +R+ALKKG++ G     ++  K + ++  P  + +E +K G
Sbjct:    3 TYDEMTIEAVKALKERNGSSLFAIKKHITASYPSL--TFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAKPQEAQKEG 84          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.390e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 TYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQG 168
            TY EM +EA+  LKERNGSS  AIKKHI  +   +  TF  H LR+ALKKG++ G
Sbjct:    3 TYDEMTVEAVKALKERNGSSLFAIKKHITASYPSL--TFTGHFLRSALKKGVESG 55          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: UPI0003F066A8 (sperm-specific protein PHI-2B/PHI-3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F066A8)

HSP 1 Score: 54.3 bits (129), Expect = 5.110e-7
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   10 LEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPED 189
            ++MV+EAL+ LK+R G S QAIK +I+T+   +  T L  +LR ALK G++ G++  P+D
Sbjct:   23 MDMVVEALTTLKDRKGISVQAIKAYILTHYTTVSPTHLTSSLRRALKTGLESGMLVRPKD 82          
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Match: UPI0001CB9DDF (sperm-specific protein PHI-2B/PHI-3-like n=9 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9DDF)

HSP 1 Score: 53.9 bits (128), Expect = 8.960e-7
Identity = 24/60 (40.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   10 LEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALKKGIQQGLIEHPED 189
            ++M++EA+  LK+R G+S QAIK +I+T++  +    +  +LR A+K GI+ GL+  P+D
Sbjct:   23 MDMIVEAIQALKDRKGTSVQAIKSYILTHHSTVSPAHITSSLRRAIKSGIESGLLVRPKD 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7936.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XWE5_9STRA1.010e-1055.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DAL4_HETAK1.930e-947.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0003F061041.700e-745.00sperm-specific protein PHI-2B-like n=1 Tax=Saccogl... [more]
D8LQ80_ECTSI1.760e-745.33Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LMF1_ECTSI1.790e-748.00H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCU1_9PHAE2.010e-746.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI2.340e-741.67H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE4.390e-756.36H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0003F066A85.110e-745.00sperm-specific protein PHI-2B/PHI-3-like n=1 Tax=S... [more]
UPI0001CB9DDF8.960e-740.00sperm-specific protein PHI-2B/PHI-3-like n=9 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7936contigP-wetherbeei_contig7936:2370..2741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMF1
Preferred nameH1
PFAMsLinker_histone
Model size255
Max annot lvl2759|Eukaryota
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons2
Evalue2.93e-08
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
Cds size255
COG categoryB
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.1032426-CDS-P-wetherbeei_contig7936:2369..24951683187010.1032426-CDS-P-wetherbeei_contig7936:2369..2495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7936 2370..2495 +
1683187010.1177094-CDS-P-wetherbeei_contig7936:2612..27411683187010.1177094-CDS-P-wetherbeei_contig7936:2612..2741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7936 2613..2741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7936.2.1prot_P-wetherbeei_contig7936.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7936 2370..2741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7936.2.1

>prot_P-wetherbeei_contig7936.2.1 ID=prot_P-wetherbeei_contig7936.2.1|Name=mRNA_P-wetherbeei_contig7936.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MTYLEMVLEALSDLKERNGSSQQAIKKHIITNNEDMENTFLPHALRTALK
KGIQQGLIEHPEDKKTRFKLTPEGRKEEVEKLGHG
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mRNA from alignment at P-wetherbeei_contig7936:2370..2741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7936.2.1 ID=mRNA_P-wetherbeei_contig7936.2.1|Name=mRNA_P-wetherbeei_contig7936.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig7936:2370..2741+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTACCTCGAGATGGTCCTGGAGGCTTTGAGCGATTTGAAGGAGCG GAACGGCAGCTCGCAGCAGGCGATTAAGAAGCACATCATCACCAACAACG AAGACATGGAAAACACCTTCTTGCCAGTAAGCGAACGCGCTACCGCGCTT TCTTTCCCTCCTTTGCCCCCCTCATCGCGGCTCACACCGCCCGCCGCGCC GCGGCAATGCCGTTCCGTCCCTGTGGCCGCCTGCACCGGCCAGCATGCGC TGCGAACAGCGCTTAAGAAGGGCATCCAGCAGGGGCTCATTGAGCACCCG GAAGACAAGAAAACCCGTTTTAAGCTGACGCCGGAGGGCCGCAAGGAGGA GGTGGAGAAGCTCGGCCACGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7936:2370..2741+

>mRNA_P-wetherbeei_contig7936.2.1 ID=mRNA_P-wetherbeei_contig7936.2.1|Name=mRNA_P-wetherbeei_contig7936.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig7936:2370..2741+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTACCTCGAGATGGTCCTGGAGGCTTTGAGCGATTTGAAGGAGCG
GAACGGCAGCTCGCAGCAGGCGATTAAGAAGCACATCATCACCAACAACG
AAGACATGGAAAACACCTTCTTGCCACATGCGCTGCGAACAGCGCTTAAG
AAGGGCATCCAGCAGGGGCTCATTGAGCACCCGGAAGACAAGAAAACCCG
TTTTAAGCTGACGCCGGAGGGCCGCAAGGAGGAGGTGGAGAAGCTCGGCC
ACGGT
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