mRNA_P-wetherbeei_contig792.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig792.1.1
Unique NamemRNA_P-wetherbeei_contig792.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig792.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig792contigP-wetherbeei_contig792:2..2781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2636
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1578
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.1911209-UTR-P-wetherbeei_contig792:1..771683187009.1911209-UTR-P-wetherbeei_contig792:1..77Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig792 2..77 +
1683187009.219128-UTR-P-wetherbeei_contig792:1799..27811683187009.219128-UTR-P-wetherbeei_contig792:1799..2781Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig792 1800..2781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.2001064-CDS-P-wetherbeei_contig792:77..3661683187009.2001064-CDS-P-wetherbeei_contig792:77..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig792 78..366 +
1683187009.2096531-CDS-P-wetherbeei_contig792:510..17991683187009.2096531-CDS-P-wetherbeei_contig792:510..1799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig792 511..1799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig792.1.1prot_P-wetherbeei_contig792.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig792 78..1799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig792.1.1

>prot_P-wetherbeei_contig792.1.1 ID=prot_P-wetherbeei_contig792.1.1|Name=mRNA_P-wetherbeei_contig792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=526bp
MSFVVFLVCLYLGGLQSLTVIIHSTSCAGGGLFVRRPAAKGTSFRPVQRK
RGSGVTFPLMPRLYAAGMGGFGRRSGPQTHLQTLDFLKSSVLKPEIGNLG
ELWEVGPLKTLQLSEPLRKAVAITCTVRPRKLPPFPFRLEPNTHCYVSNK
SCDDIVGCLEQCFTDGNVDAEYEADGCFWQCARFGAGVFVELRVTVYRCD
GERDGQLCVEFRLSRGDRFEFRRVYQGAISALGDAGCCLDLARAGRRPNA
AVMTAGMPLARSALAPNAVPLFGAAPVPVPAAAAAGAREEMDLSPLLGMV
SDCCCDVNYEGARLIAQLTATEENRDTLARGDVVLALVALVIKGVTEAAA
AIAAAGAGDAQAPPPQREPKQQPLVVELGAGAGAAVPAKRCKLGPLGERL
SPVPEPSSMARAFAVFALSNLSERVDCQQIIAGSPDMLPSLLRLASCGCG
GPSYVELEERRECARLLANLAGPYGKEMAENVAKGGAPVRDFVMRCDGLP
DDRLKMHASRVRRLLADAPGGVLAC*
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mRNA from alignment at P-wetherbeei_contig792:2..2781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig792.1.1 ID=mRNA_P-wetherbeei_contig792.1.1|Name=mRNA_P-wetherbeei_contig792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2780bp|location=Sequence derived from alignment at P-wetherbeei_contig792:2..2781+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTTGAAAGGGCTGCTGCAAGACAGGCGGAGTTCGCTTTTGCAACTGA
ATGAGGCACCGGGTGCTTACGTCTCCATGAGTTTCGTGGTTTTCTTGGTT
TGCCTATATTTGGGTGGTTTGCAAAGTTTAACTGTCATTATTCATTCCAC
GTCGTGCGCCGGCGGCGGTCTTTTTGTGCGTAGGCCGGCCGCAAAAGGGA
CTAGTTTTCGTCCGGTCCAGAGAAAAAGAGGGAGTGGCGTTACTTTTCCT
CTTATGCCACGATTATATGCGGCAGGAATGGGAGGGTTTGGGCGAAGATC
GGGTCCTCAAACGCATCTGCAGACGCTGGATTTTTTGAAATCAAGCGTTC
TGAAGCCGGAAATCGGTATGTTGCGCGGTGACGCGGAATTTAAAGGACTT
TGAAAGCGATTTCCGAGACGACTGCGGTTGCGGAAGGTTGACGAATGCGT
CGCGCCGGATACCAAGATTTCATCCACGTGAATGCCCAACTTTTTTCTTA
CGCTAGCAGGGAACCTTGGTGAACTCTGGGAGGTGGGACCGCTGAAGACT
CTCCAATTGAGCGAGCCGCTCCGCAAGGCGGTGGCGATAACCTGCACGGT
GCGGCCGCGAAAGCTGCCGCCCTTTCCGTTCCGCCTCGAGCCCAATACGC
ACTGCTACGTGAGCAACAAATCGTGCGACGACATCGTCGGCTGCCTCGAG
CAGTGCTTCACCGATGGGAACGTTGATGCCGAGTACGAAGCAGACGGCTG
CTTCTGGCAGTGCGCGCGATTCGGCGCCGGCGTCTTCGTGGAGCTGCGGG
TCACCGTTTACCGCTGCGACGGGGAGCGTGACGGCCAGCTGTGCGTCGAA
TTCCGCCTGAGCCGCGGCGACCGCTTCGAATTCCGTCGTGTCTACCAGGG
GGCCATCTCGGCTCTCGGCGACGCGGGCTGCTGCCTTGACCTCGCGCGGG
CCGGGCGGAGGCCGAACGCCGCCGTTATGACGGCGGGCATGCCGTTGGCA
CGGTCCGCGCTGGCGCCCAACGCGGTGCCTTTGTTCGGCGCTGCACCGGT
GCCGGTGCCGGCCGCGGCGGCGGCCGGTGCCAGGGAGGAGATGGACCTGT
CGCCGCTGCTGGGGATGGTGTCGGACTGCTGCTGCGACGTCAACTACGAG
GGCGCGCGGCTGATTGCGCAGCTGACCGCGACGGAGGAGAACCGCGACAC
GCTCGCGCGCGGTGACGTCGTGCTCGCGCTCGTCGCGCTCGTCATCAAGG
GGGTCACCGAGGCCGCCGCCGCGATTGCCGCGGCGGGGGCCGGCGATGCA
CAGGCGCCGCCGCCGCAGCGGGAGCCAAAGCAGCAGCCGCTGGTGGTCGA
GTTGGGGGCCGGAGCTGGAGCCGCCGTGCCGGCGAAGCGCTGCAAGCTGG
GGCCGCTCGGGGAGCGGCTGTCGCCTGTGCCGGAGCCGTCGTCGATGGCG
CGCGCCTTTGCCGTCTTTGCGCTGTCCAACCTCAGCGAGCGGGTCGACTG
CCAGCAGATCATCGCCGGGAGCCCCGACATGCTTCCGTCGCTGCTCCGGC
TTGCGTCGTGCGGCTGCGGCGGGCCCAGCTACGTTGAGCTCGAGGAGCGG
CGCGAGTGTGCGCGGCTCCTGGCAAACCTCGCGGGGCCGTACGGCAAGGA
AATGGCCGAGAATGTCGCCAAGGGCGGCGCGCCGGTCCGCGATTTTGTCA
TGCGCTGCGACGGCCTCCCTGACGACCGCCTGAAGATGCACGCCAGCAGG
GTGCGCCGGCTGCTCGCCGATGCGCCCGGCGGCGTTCTGGCCTGCTGAGC
CGACGGTTATGAGGCGCGGGCGGCGGCGAACTGTCGATCCCGGGCGCCCC
GGTTCCGTTTTTCGAAGGGGAAGCGGCCGCTGCTGCCGTGCTGGGGGCCT
AGGCAGTGGCGCAGGCGGGCGAAAGCTGCAGCAATGGGTGGGGGTGGCAG
CGGCGGTGCGGTCTCGACTGCCTGCCGTTGCCGCCGTGACCGGGAGCTGT
AGCGGCGAATCCCGTCCGTCTCGTTGCTGCTGAAAGTGGACGACGGTGCG
ACGGCGGCAAAGATGGCGGCGGCGAATGCGGCGGCGGCGAAGGCGGCGGC
GGCGACAAAGATGGCCGGAACAGTGGCGGCGGCAGCGACGAGGGCAATTT
TCGTACAGCCTTTCAGGCGTTCAAAGGAGCCCTGCCATCCAACGGTTGCT
TCCGCTTGCCAGGTCGGCGCTGCGAGGCGCCGCGGCCGGCGCGTCCTTCG
GCGCCTCGGGAGACCGGGCGGTGGCGCGGGACTGGGTTGGAGTGTTTTGT
GGTTCCTCTTAGACCTCACGCGGCTTACTTGGTACGCGGCGGGGCAGGGA
CTACGGCCGCCGGACGGACGGGGGCCCGGTGTTATGGGGATTTAGCCGGC
AGCGCCAGCGGATTGCCAGCGCGGTTGATGAGGGCATGTAAGCAGAGTTG
GTGGGGCCACGGAAACTTTTCTCGCACGCCCGCGCTTCGGGTCGGGGGAG
AGTGGTAAGAAGGAGTGTTAAAGGAGTGACGGATGAGAGGACCGAAAGAC
GGGCGGGCAGGCATGCTTTGTTCACAGCAAGTGGGCGGGTGGCAGACCGC
GCGCGGCAGGTGGCCGGCTGGTTTTGGTTTCGGCCGACCCACAGGCTCGC
GCGACTGTGGCCTCCTGGTGTCAAATACGTTCCTTTTTCGCCGTACATTA
CCTCTTTTGTGCAGGCCCGCTCGGCGGCGCGTGCGCGTGGTCACTTCCTT
CCTCCAGCGCTGTGTTGACGCAAACCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig792:2..2781+

>mRNA_P-wetherbeei_contig792.1.1 ID=mRNA_P-wetherbeei_contig792.1.1|Name=mRNA_P-wetherbeei_contig792.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1578bp|location=Sequence derived from alignment at P-wetherbeei_contig792:2..2781+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTCGTGGTTTTCTTGGTTTGCCTATATTTGGGTGGTTTGCAAAG
TTTAACTGTCATTATTCATTCCACGTCGTGCGCCGGCGGCGGTCTTTTTG
TGCGTAGGCCGGCCGCAAAAGGGACTAGTTTTCGTCCGGTCCAGAGAAAA
AGAGGGAGTGGCGTTACTTTTCCTCTTATGCCACGATTATATGCGGCAGG
AATGGGAGGGTTTGGGCGAAGATCGGGTCCTCAAACGCATCTGCAGACGC
TGGATTTTTTGAAATCAAGCGTTCTGAAGCCGGAAATCGGGAACCTTGGT
GAACTCTGGGAGGTGGGACCGCTGAAGACTCTCCAATTGAGCGAGCCGCT
CCGCAAGGCGGTGGCGATAACCTGCACGGTGCGGCCGCGAAAGCTGCCGC
CCTTTCCGTTCCGCCTCGAGCCCAATACGCACTGCTACGTGAGCAACAAA
TCGTGCGACGACATCGTCGGCTGCCTCGAGCAGTGCTTCACCGATGGGAA
CGTTGATGCCGAGTACGAAGCAGACGGCTGCTTCTGGCAGTGCGCGCGAT
TCGGCGCCGGCGTCTTCGTGGAGCTGCGGGTCACCGTTTACCGCTGCGAC
GGGGAGCGTGACGGCCAGCTGTGCGTCGAATTCCGCCTGAGCCGCGGCGA
CCGCTTCGAATTCCGTCGTGTCTACCAGGGGGCCATCTCGGCTCTCGGCG
ACGCGGGCTGCTGCCTTGACCTCGCGCGGGCCGGGCGGAGGCCGAACGCC
GCCGTTATGACGGCGGGCATGCCGTTGGCACGGTCCGCGCTGGCGCCCAA
CGCGGTGCCTTTGTTCGGCGCTGCACCGGTGCCGGTGCCGGCCGCGGCGG
CGGCCGGTGCCAGGGAGGAGATGGACCTGTCGCCGCTGCTGGGGATGGTG
TCGGACTGCTGCTGCGACGTCAACTACGAGGGCGCGCGGCTGATTGCGCA
GCTGACCGCGACGGAGGAGAACCGCGACACGCTCGCGCGCGGTGACGTCG
TGCTCGCGCTCGTCGCGCTCGTCATCAAGGGGGTCACCGAGGCCGCCGCC
GCGATTGCCGCGGCGGGGGCCGGCGATGCACAGGCGCCGCCGCCGCAGCG
GGAGCCAAAGCAGCAGCCGCTGGTGGTCGAGTTGGGGGCCGGAGCTGGAG
CCGCCGTGCCGGCGAAGCGCTGCAAGCTGGGGCCGCTCGGGGAGCGGCTG
TCGCCTGTGCCGGAGCCGTCGTCGATGGCGCGCGCCTTTGCCGTCTTTGC
GCTGTCCAACCTCAGCGAGCGGGTCGACTGCCAGCAGATCATCGCCGGGA
GCCCCGACATGCTTCCGTCGCTGCTCCGGCTTGCGTCGTGCGGCTGCGGC
GGGCCCAGCTACGTTGAGCTCGAGGAGCGGCGCGAGTGTGCGCGGCTCCT
GGCAAACCTCGCGGGGCCGTACGGCAAGGAAATGGCCGAGAATGTCGCCA
AGGGCGGCGCGCCGGTCCGCGATTTTGTCATGCGCTGCGACGGCCTCCCT
GACGACCGCCTGAAGATGCACGCCAGCAGGGTGCGCCGGCTGCTCGCCGA
TGCGCCCGGCGGCGTTCTGGCCTGCTGA
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