mRNA_P-wetherbeei_contig790.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig790.5.1
Unique NamemRNA_P-wetherbeei_contig790.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.060e-18
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2 
Query:  311 WSEEGMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            WS    SR+RRA E AAAH  GR   L WR ++  E    C ARAKR+++RAIHACP ++ LWLDA R   LR  F  AE +DL++V+ EK
Sbjct: 1635 WSAAEQSRLRRAFEGAAAHASGRRLALPWRLHMAFERAARCHARAKRLHIRAIHACPGARALWLDAARRGALRGVFRAAELSDLVDVMAEK 1725
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2P6VEU4_9CHLO (NRDE2-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEU4_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 5.170e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:  335 VRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGV 589
            V  ALERA  HP GR+ PLLWRCYL+ E  RG     +RV++RAI ACPWSK LW D   +A+L       E ++ +EV+ +KG+
Sbjct: 1228 VAAALERAVTHPAGRHTPLLWRCYLRFEGYRGRHEAVRRVFLRAIGACPWSKGLWCDG--LALLNGHVPPKELSEYLEVMKDKGI 1310
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A0A9HJF9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9HJF9_ARUDO)

HSP 1 Score: 75.1 bits (183), Expect = 4.340e-13
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  311 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            W++ G  +R+    ERA A  + +   LLWRCYL  E    C A A +RV+ RAIH+CPWSKRLWLD  +   L     + E +DL EV+ EK
Sbjct:   52 WNKAGSDNRIHSLFERALADDKLKKSVLLWRCYLAYEAEIACNASAARRVFFRAIHSCPWSKRLWLDGFQK--LSSILTLKELSDLQEVMREK 142
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A8J9S1M7_9CHLO (Probable nuclear exosome regulator NRDE2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S1M7_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 8.570e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 2 
Query:  323 GMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGV 589
            G  RV+   ERA +  + + C LLWR Y+  E+ R C   A+RV++RAIHACPWSK LW+D   +  L       E ++L+EV+ EK V
Sbjct: 1186 GAHRVQALFERALSAKQMQQCALLWRAYMGYELSRDCPEAARRVFLRAIHACPWSKALWMDG--LVSLGDVVSARERSELLEVVREKDV 1272
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: K3YPF1_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YPF1_SETIT)

HSP 1 Score: 77.8 bits (190), Expect = 1.530e-12
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  311 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            WS+ G  +R+    ERA A  + +   LLWRCYL  E  + C A A +RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct: 1041 WSKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEKACNASAARRVFFRAIHACPWSKRLWLDGFQK--LSSILTLKELSDLQEVMRDK 1131
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: UPI0019D5ED61 (LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5ED61)

HSP 1 Score: 77.0 bits (188), Expect = 2.630e-12
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  311 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARA-KRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            W++ G  +R+    ERA A  + +   LLWRCYL  E  + C A A +RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct:  762 WNKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEKACNASAARRVFFRAIHACPWSKRLWLDGFQK--LSSVLTLKELSDLQEVMRDK 852
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2P6TS19_CHLSO (NRDE2-like protein isoform X2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS19_CHLSO)

HSP 1 Score: 77.0 bits (188), Expect = 2.960e-12
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:  335 VRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            V+  LERA +H  GR+CPLLWR YL+ E  RG     +R+++RAI ACPW+K LW D   +A+L       E ++ +EV+ +K
Sbjct: 1159 VQSVLERAVSHDSGRHCPLLWRLYLRFEAHRGRHDAVRRLFLRAIGACPWAKALWCDG--LALLNGRAPPKELSEYIEVMKDK 1239
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: B4FYL0_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=B4FYL0_MAIZE)

HSP 1 Score: 72.4 bits (176), Expect = 3.240e-12
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 2 
Query:  311 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            W + G  +R+    ERA A  + +   LLWRCYL  E    C  + A+RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+ +K
Sbjct:   39 WGKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEIVCNSSAARRVFFRAIHACPWSKRLWLDGFQK--LGSVLTLKELSDLQEVMRDK 129
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A2Z7C0W4_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7C0W4_9LAMI)

HSP 1 Score: 76.6 bits (187), Expect = 3.770e-12
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 2 
Query:  332 RVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEK 583
            R+R   ERA    + +   +LWRCYL+ E+   C FA AKRV+ RAIHACPWSK+LWLD      L     V E +DL EV+ +K
Sbjct: 1063 RIRGLFERALEDGKLQNLVILWRCYLEYEMNIACNFAAAKRVFFRAIHACPWSKKLWLDG--FLKLDSILTVKELSDLQEVMRDK 1145
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BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Match: A0A453PP40_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PP40_AEGTS)

HSP 1 Score: 73.6 bits (179), Expect = 3.820e-12
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 2 
Query:  311 WSEEGM-SRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGC-FARAKRVYMRAIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVL 574
            WS+ G  +R+    ERA A  + +   LLWRCYL  E    C  + A+RV+ RAIHACPWSKRLWLD  +   L     + E +DL EV+
Sbjct:   95 WSKAGSYNRIHSLFERALADDKLQKSVLLWRCYLAYEAEIACNTSAARRVFFRAIHACPWSKRLWLDGFQK--LSSVLTMKELSDLQEVM 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig790.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIY3_9STRA2.060e-1851.65NRDE-2, necessary for RNA interference-domain-cont... [more]
A0A2P6VEU4_9CHLO5.170e-1549.41NRDE2-like protein n=1 Tax=Micractinium conductrix... [more]
A0A0A9HJF9_ARUDO4.340e-1345.16Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A8J9S1M7_9CHLO8.570e-1343.82Probable nuclear exosome regulator NRDE2 n=1 Tax=C... [more]
K3YPF1_SETIT1.530e-1246.24Uncharacterized protein n=14 Tax=Paniceae TaxID=14... [more]
UPI0019D5ED612.630e-1245.16LOW QUALITY PROTEIN: nuclear exosome regulator NRD... [more]
A0A2P6TS19_CHLSO2.960e-1244.58NRDE2-like protein isoform X2 n=1 Tax=Chlorella so... [more]
B4FYL0_MAIZE3.240e-1244.09Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A2Z7C0W4_9LAMI3.770e-1248.24Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A453PP40_AEGTS3.820e-1245.56Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig790contigP-wetherbeei_contig790:5390..6177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJJ5
PFAMsNRDE-2
Model size788
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0001672,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010847,GO:0016043,GO:0016246,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0032991,GO:0033043,GO:0033044,GO:0035194,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071013,GO:0071840,GO:0080090,GO:1902275,GO:1902494,GO:1902679,GO:1902802,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue1.51e-20
EggNOG OGsKOG1972@1|root,KOG1972@2759|Eukaryota
DescriptionNRDE-2, necessary for RNA interference, domain containing
Cds size651
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.816054-UTR-P-wetherbeei_contig790:5389..54021683187007.816054-UTR-P-wetherbeei_contig790:5389..5402Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig790 5390..5402 +
1683187007.8372886-UTR-P-wetherbeei_contig790:6053..61771683187007.8372886-UTR-P-wetherbeei_contig790:6053..6177Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig790 6054..6177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.8279705-CDS-P-wetherbeei_contig790:5402..60531683187007.8279705-CDS-P-wetherbeei_contig790:5402..6053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 5403..6053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig790.5.1prot_P-wetherbeei_contig790.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig790 5403..6053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig790.5.1

>prot_P-wetherbeei_contig790.5.1 ID=prot_P-wetherbeei_contig790.5.1|Name=mRNA_P-wetherbeei_contig790.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
MRVAQHVSAVASRRARAWAAPGPTTLEWLFHVLVQMWACEDDVATATAHL
TTGLLPVVADIAGAATDAVAAAKGPAAGTAAATPAVAAATAAEATGVRRW
SEEGMSRVRRALERAAAHPRGRYCPLLWRCYLQSEVGRGCFARAKRVYMR
AIHACPWSKRLWLDACRMAVLRRTFGVAEAADLMEVLLEKGVGAVNEPPP
FHGDEKGGRAGDGMED*
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mRNA from alignment at P-wetherbeei_contig790:5390..6177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig790.5.1 ID=mRNA_P-wetherbeei_contig790.5.1|Name=mRNA_P-wetherbeei_contig790.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=788bp|location=Sequence derived from alignment at P-wetherbeei_contig790:5390..6177+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCGGCCGCCATGCGCGTGGCGCAGCACGTCTCCGCCGTCGCCTCGC
GGCGGGCGCGGGCGTGGGCGGCGCCGGGCCCCACCACGCTCGAATGGCTC
TTCCACGTGCTGGTGCAGATGTGGGCTTGCGAGGACGATGTGGCGACCGC
TACCGCCCATCTTACGACGGGGCTCCTTCCCGTCGTGGCGGATATTGCCG
GGGCGGCGACAGATGCGGTAGCTGCTGCAAAGGGTCCGGCGGCAGGAACG
GCAGCGGCAACACCCGCGGTGGCGGCGGCGACTGCGGCAGAGGCAACAGG
AGTGAGGCGCTGGTCGGAGGAGGGCATGTCGCGCGTGCGGCGGGCGCTGG
AGCGGGCCGCGGCCCACCCGCGCGGGCGGTACTGCCCGCTGCTCTGGCGC
TGCTACCTGCAGAGCGAGGTTGGCCGCGGCTGCTTCGCGCGCGCCAAGCG
GGTGTACATGCGCGCCATCCACGCGTGCCCGTGGAGCAAGCGGCTGTGGC
TGGACGCTTGCCGGATGGCAGTGCTGCGCCGGACGTTCGGAGTCGCTGAG
GCCGCCGACCTGATGGAGGTGCTGCTGGAGAAGGGCGTCGGCGCCGTGAA
TGAGCCGCCGCCTTTCCACGGGGATGAGAAAGGCGGCCGTGCAGGCGACG
GCATGGAGGACTAAAGAGGGTAGACAAGACAGCTCGCGCGACAGCGTGAT
GGAACGTTTGTACATAAAAATGGCCGACGGAAAGCAGGAAACAAAAAGGG
TAGGGCACCGACACGCACACACTATAAAAATTTACATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig790:5390..6177+

>mRNA_P-wetherbeei_contig790.5.1 ID=mRNA_P-wetherbeei_contig790.5.1|Name=mRNA_P-wetherbeei_contig790.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig790:5390..6177+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGTGGCGCAGCACGTCTCCGCCGTCGCCTCGCGGCGGGCGCGGGC
GTGGGCGGCGCCGGGCCCCACCACGCTCGAATGGCTCTTCCACGTGCTGG
TGCAGATGTGGGCTTGCGAGGACGATGTGGCGACCGCTACCGCCCATCTT
ACGACGGGGCTCCTTCCCGTCGTGGCGGATATTGCCGGGGCGGCGACAGA
TGCGGTAGCTGCTGCAAAGGGTCCGGCGGCAGGAACGGCAGCGGCAACAC
CCGCGGTGGCGGCGGCGACTGCGGCAGAGGCAACAGGAGTGAGGCGCTGG
TCGGAGGAGGGCATGTCGCGCGTGCGGCGGGCGCTGGAGCGGGCCGCGGC
CCACCCGCGCGGGCGGTACTGCCCGCTGCTCTGGCGCTGCTACCTGCAGA
GCGAGGTTGGCCGCGGCTGCTTCGCGCGCGCCAAGCGGGTGTACATGCGC
GCCATCCACGCGTGCCCGTGGAGCAAGCGGCTGTGGCTGGACGCTTGCCG
GATGGCAGTGCTGCGCCGGACGTTCGGAGTCGCTGAGGCCGCCGACCTGA
TGGAGGTGCTGCTGGAGAAGGGCGTCGGCGCCGTGAATGAGCCGCCGCCT
TTCCACGGGGATGAGAAAGGCGGCCGTGCAGGCGACGGCATGGAGGACTA
A
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