mRNA_P-wetherbeei_contig790.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig790.4.1
Unique NamemRNA_P-wetherbeei_contig790.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig790.4.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.170e-7
Identity = 61/176 (34.66%), Postives = 73/176 (41.48%), Query Frame = 1 
Query:    1 LEAGLPLSAAEEV-----------------GEGGCPAVLAPGPAGAAARQAALHMLVCMAEGKYVKPKGAGGGRSKAGGSAGGAAVSPMQ------------------LLHARMLLADHVRREATALGAAPGVVTG--ALDCTPALFYYAAAFAWLQALSMGLSEAQEAIRETVQQ 417
            L AGLPLSAA                      GGC A L       AAR AALH+L+ MAEG Y KP                AA + +Q                  L+ AR L A+H+ REA AL +A         LD TP  FYYAAA  WLQ  + G   A  A++  + Q
Sbjct: 1280 LTAGLPLSAAXXXXXXXXXXXTPQAPAGSNASGGCVAELCSPTGSGAARDAALHLLLSMAEGSYEKPPAV-------------AAAAALQXXXXXXXXXXXXXXXXXRLVRARRLFAEHLTREAEALRSAXXXXXXXXGLDATPPFFYYAAALTWLQLATDGALAAAAAMQSALLQ 1442
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig790.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZIY3_9STRA1.170e-734.66NRDE-2, necessary for RNA interference-domain-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig790contigP-wetherbeei_contig790:4512..5389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJJ5
PFAMsNRDE-2
Model size878
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001672,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010847,GO:0016043,GO:0016246,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0032991,GO:0033043,GO:0033044,GO:0035194,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071013,GO:0071840,GO:0080090,GO:1902275,GO:1902494,GO:1902679,GO:1902802,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue9.78e-09
EggNOG OGsKOG1972@1|root,KOG1972@2759|Eukaryota
DescriptionNRDE-2, necessary for RNA interference, domain containing
Cds size876
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.7774498-CDS-P-wetherbeei_contig790:4511..53871683187007.7774498-CDS-P-wetherbeei_contig790:4511..5387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 4512..5387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig790.4.1prot_P-wetherbeei_contig790.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig790 4512..5387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig790.4.1

>prot_P-wetherbeei_contig790.4.1 ID=prot_P-wetherbeei_contig790.4.1|Name=mRNA_P-wetherbeei_contig790.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
LEAGLPLSAAEEVGEGGCPAVLAPGPAGAAARQAALHMLVCMAEGKYVKP
KGAGGGRSKAGGSAGGAAVSPMQLLHARMLLADHVRREATALGAAPGVVT
GALDCTPALFYYAAAFAWLQALSMGLSEAQEAIRETVQQWPAPVVHGTEE
SVLDMPRPAGGGSADGATLAAGAAIAPGGGDGSGSGGGGGGDDEAAKAKE
EASASSLVAWGNDDGWRMAATEGAAAVGLERFHGAACELLYIATKHGRQK
SGGGGLSGCQGSPAPLRAALRRALRDFPLSPALLAVLVANEQ
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mRNA from alignment at P-wetherbeei_contig790:4512..5389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig790.4.1 ID=mRNA_P-wetherbeei_contig790.4.1|Name=mRNA_P-wetherbeei_contig790.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=878bp|location=Sequence derived from alignment at P-wetherbeei_contig790:4512..5389+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGGCCGGGCTGCCGCTGTCGGCGGCCGAGGAAGTTGGGGAGGGCGG
CTGTCCGGCGGTGCTGGCCCCCGGTCCGGCAGGAGCGGCGGCGCGGCAGG
CGGCGCTGCACATGCTTGTTTGCATGGCGGAAGGCAAGTATGTCAAGCCA
AAAGGGGCGGGCGGCGGTCGTTCCAAGGCGGGTGGGAGTGCCGGTGGGGC
CGCCGTTTCGCCCATGCAGCTGCTCCATGCGAGGATGCTGTTAGCTGATC
ACGTTCGGAGGGAGGCGACGGCGCTCGGAGCCGCACCGGGGGTCGTTACC
GGAGCGCTTGACTGCACGCCGGCGCTCTTCTATTACGCGGCCGCATTCGC
CTGGCTGCAGGCGCTCTCCATGGGCCTCAGCGAGGCGCAGGAAGCGATTC
GGGAGACTGTTCAGCAGTGGCCGGCACCGGTCGTCCACGGCACTGAAGAA
TCCGTCCTGGACATGCCGCGGCCGGCTGGCGGTGGCAGCGCTGACGGTGC
CACTTTGGCGGCGGGCGCGGCAATAGCTCCCGGAGGCGGCGATGGTAGTG
GCAGCGGCGGCGGCGGCGGCGGTGATGATGAAGCTGCCAAGGCGAAAGAG
GAGGCTTCGGCATCATCGCTTGTCGCCTGGGGCAACGACGACGGGTGGCG
CATGGCGGCGACCGAGGGCGCGGCCGCCGTCGGCCTCGAGCGCTTCCATG
GTGCCGCCTGCGAACTCCTCTACATTGCCACCAAGCATGGTCGCCAGAAG
TCGGGCGGCGGCGGCCTCTCCGGCTGCCAGGGCTCCCCAGCGCCGCTGCG
CGCGGCGTTGCGGCGGGCGCTGCGGGACTTTCCACTGAGCCCGGCGCTGC
TCGCCGTGCTGGTGGCCAATGAACAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig790:4512..5389+

>mRNA_P-wetherbeei_contig790.4.1 ID=mRNA_P-wetherbeei_contig790.4.1|Name=mRNA_P-wetherbeei_contig790.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig790:4512..5389+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGGCCGGGCTGCCGCTGTCGGCGGCCGAGGAAGTTGGGGAGGGCGG
CTGTCCGGCGGTGCTGGCCCCCGGTCCGGCAGGAGCGGCGGCGCGGCAGG
CGGCGCTGCACATGCTTGTTTGCATGGCGGAAGGCAAGTATGTCAAGCCA
AAAGGGGCGGGCGGCGGTCGTTCCAAGGCGGGTGGGAGTGCCGGTGGGGC
CGCCGTTTCGCCCATGCAGCTGCTCCATGCGAGGATGCTGTTAGCTGATC
ACGTTCGGAGGGAGGCGACGGCGCTCGGAGCCGCACCGGGGGTCGTTACC
GGAGCGCTTGACTGCACGCCGGCGCTCTTCTATTACGCGGCCGCATTCGC
CTGGCTGCAGGCGCTCTCCATGGGCCTCAGCGAGGCGCAGGAAGCGATTC
GGGAGACTGTTCAGCAGTGGCCGGCACCGGTCGTCCACGGCACTGAAGAA
TCCGTCCTGGACATGCCGCGGCCGGCTGGCGGTGGCAGCGCTGACGGTGC
CACTTTGGCGGCGGGCGCGGCAATAGCTCCCGGAGGCGGCGATGGTAGTG
GCAGCGGCGGCGGCGGCGGCGGTGATGATGAAGCTGCCAAGGCGAAAGAG
GAGGCTTCGGCATCATCGCTTGTCGCCTGGGGCAACGACGACGGGTGGCG
CATGGCGGCGACCGAGGGCGCGGCCGCCGTCGGCCTCGAGCGCTTCCATG
GTGCCGCCTGCGAACTCCTCTACATTGCCACCAAGCATGGTCGCCAGAAG
TCGGGCGGCGGCGGCCTCTCCGGCTGCCAGGGCTCCCCAGCGCCGCTGCG
CGCGGCGTTGCGGCGGGCGCTGCGGGACTTTCCACTGAGCCCGGCGCTGC
TCGCCGTGCTGGTGGCCAATGAACAG
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