mRNA_P-wetherbeei_contig79.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig79.5.1
Unique NamemRNA_P-wetherbeei_contig79.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: UPI001F3A0635 (nucleoside hydrolase n=1 Tax=Membranicola sp. C281 TaxID=2904244 RepID=UPI001F3A0635)

HSP 1 Score: 56.2 bits (134), Expect = 6.440e-7
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   91 VTKRRVWLDTDTSAGRARLATAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            +TK+++W+DTD S G  R                 HT  G    DVDD  A+L  +KSP ++++G+S VFGN  +E  + + Q
Sbjct:    1 MTKQKIWIDTDLSVGMKR-----------------HTREGYC--DVDDGYAVLQLMKSPEVDIIGISAVFGNTLIENAYGLCQ 64          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: A0A5S9IQ58_9BACT (Ribosylpyrimidine nucleosidase n=1 Tax=Candidatus Uabimicrobium amorphum TaxID=2596890 RepID=A0A5S9IQ58_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-6
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:  205 AGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            AG+  +DVDDALALL   +SP + +VG+SVVFGNA L++ + IA+
Sbjct:   31 AGIEYRDVDDALALLQAFRSPELNIVGISVVFGNASLKEGYPIAK 75          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: A0A835ZEH1_9STRA (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEH1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.100e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:  229 DDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            DDAL LL CI SP++ELVGVSV FGNA L +  DIA+
Sbjct:    1 DDALCLLACINSPAVELVGVSVTFGNANLTEMVDIAR 37          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: UPI001C06E421 (nucleoside hydrolase n=2 Tax=Zobellia TaxID=112040 RepID=UPI001C06E421)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-5
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 1
Query:   91 VTKRRVWLDTDTSAGRARLATAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            +TK++VW+DTD S G  R     +                    DVDD  A+L  IK+ +IE+ G+S VFGN  +E  + ++Q
Sbjct:    1 MTKKKVWIDTDLSVGMTREKREGYC-------------------DVDDGYAVLQLIKADTIEVCGISAVFGNTVIENSYPLSQ 64          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: UPI00188DB410 (nucleoside hydrolase n=1 Tax=Zobellia roscoffensis TaxID=2779508 RepID=UPI00188DB410)

HSP 1 Score: 51.6 bits (122), Expect = 2.800e-5
Identity = 26/83 (31.33%), Postives = 43/83 (51.81%), Query Frame = 1
Query:   91 VTKRRVWLDTDTSAGRARLATAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            +TK++VW+DTD S G  R   + +                    DVDD  A+L  +K+ +IE+ G+S VFGN  ++  + ++Q
Sbjct:    1 MTKKKVWIDTDLSVGMTREKRSGYC-------------------DVDDGYAVLQLMKADTIEICGISAVFGNTPIKNSYPLSQ 64          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: UPI001FE38D2D (nucleoside hydrolase n=2 Tax=Zobellia TaxID=112040 RepID=UPI001FE38D2D)

HSP 1 Score: 51.2 bits (121), Expect = 3.830e-5
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query:   97 KRRVWLDTDTSAGRARLATAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            K++VW+DTD S G  R                 H   G    DVDD  A+L  IK+ +IE+ G+S VFGN  +E  + ++Q
Sbjct:    3 KKKVWIDTDLSVGMTR-----------------HKREGYC--DVDDGYAVLQLIKADTIEICGISAVFGNTIIENSYPLSQ 64          
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Match: UPI001F5CFD09 (nucleoside hydrolase n=1 Tax=Vibrio vulnificus TaxID=672 RepID=UPI001F5CFD09)

HSP 1 Score: 50.4 bits (119), Expect = 8.300e-5
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1
Query:   97 KRRVWLDTDTSAGRARLATAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVFGNAELEQQFDIAQ 339
            K+RVW+DTD SAG                     +  G P  DVDDA A+L    SP++ ++GV  VFGN +++    +AQ
Sbjct:  229 KKRVWIDTDISAGAT-------------------SETGKPC-DVDDAYAMLSLFNSPNVRVMGVGTVFGNTDVDTAHKLAQ 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig79.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI001F3A06356.440e-734.94nucleoside hydrolase n=1 Tax=Membranicola sp. C281... [more]
A0A5S9IQ58_9BACT1.270e-655.56Ribosylpyrimidine nucleosidase n=1 Tax=Candidatus ... [more]
A0A835ZEH1_9STRA8.100e-667.57Inosine/uridine-preferring nucleoside hydrolase do... [more]
UPI001C06E4211.090e-533.73nucleoside hydrolase n=2 Tax=Zobellia TaxID=112040... [more]
UPI00188DB4102.800e-531.33nucleoside hydrolase n=1 Tax=Zobellia roscoffensis... [more]
UPI001FE38D2D3.830e-535.80nucleoside hydrolase n=2 Tax=Zobellia TaxID=112040... [more]
UPI001F5CFD098.300e-535.80nucleoside hydrolase n=1 Tax=Vibrio vulnificus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig79contigP-wetherbeei_contig79:14608..14946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1392489.JPOL01000002_gene1543
PFAMsIU_nuc_hydro
Model size339
Max annot lvl976|Bacteroidetes
KEGG koko:K01250
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.14e-08
EggNOG OGsCOG1957@1|root,COG1957@2|Bacteria,4NIQ1@976|Bacteroidetes,1HZUH@117743|Flavobacteriia
DescriptionPFAM Inosine-uridine preferring nucleoside hydrolase
Cds size339
COG categoryF
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.7053714-CDS-P-wetherbeei_contig79:14607..149461683187007.7053714-CDS-P-wetherbeei_contig79:14607..14946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig79 14608..14946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig79.5.1prot_P-wetherbeei_contig79.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig79 14608..14946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig79.5.1

>prot_P-wetherbeei_contig79.5.1 ID=prot_P-wetherbeei_contig79.5.1|Name=mRNA_P-wetherbeei_contig79.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MSATIRSLSLFLLFSHSATFGLEETPKAAPVTKRRVWLDTDTSAGRARLA
TAAFIRIFSHYSSMFHTHAGLPGKDVDDALALLHCIKSPSIELVGVSVVF
GNAELEQQFDIAQ
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mRNA from alignment at P-wetherbeei_contig79:14608..14946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig79.5.1 ID=mRNA_P-wetherbeei_contig79.5.1|Name=mRNA_P-wetherbeei_contig79.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig79:14608..14946+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGCAACCATTCGCTCGTTGTCCCTCTTCCTGCTCTTCTCCCACTC AGCGACTTTTGGGCTGGAAGAAACTCCGAAAGCCGCCCCTGTCACAAAAC GAAGAGTCTGGCTTGACACCGACACTAGTGCAGGTAGAGCCCGTCTTGCG ACAGCGGCTTTTATTCGCATCTTCTCACACTACTCTTCGATGTTCCATAC ACACGCAGGACTTCCTGGAAAGGACGTTGACGACGCGCTGGCGCTGCTGC ATTGCATTAAAAGTCCGAGCATCGAGTTGGTAGGCGTAAGCGTCGTATTT GGGAACGCGGAGCTGGAGCAGCAATTCGATATCGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig79:14608..14946+

>mRNA_P-wetherbeei_contig79.5.1 ID=mRNA_P-wetherbeei_contig79.5.1|Name=mRNA_P-wetherbeei_contig79.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig79:14608..14946+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGCAACCATTCGCTCGTTGTCCCTCTTCCTGCTCTTCTCCCACTC
AGCGACTTTTGGGCTGGAAGAAACTCCGAAAGCCGCCCCTGTCACAAAAC
GAAGAGTCTGGCTTGACACCGACACTAGTGCAGGTAGAGCCCGTCTTGCG
ACAGCGGCTTTTATTCGCATCTTCTCACACTACTCTTCGATGTTCCATAC
ACACGCAGGACTTCCTGGAAAGGACGTTGACGACGCGCTGGCGCTGCTGC
ATTGCATTAAAAGTCCGAGCATCGAGTTGGTAGGCGTAAGCGTCGTATTT
GGGAACGCGGAGCTGGAGCAGCAATTCGATATCGCGCAG
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