mRNA_P-wetherbeei_contig7894.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7894.2.1
Unique NamemRNA_P-wetherbeei_contig7894.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A8J2WRK2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WRK2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.060e-40
Identity = 147/354 (41.53%), Postives = 201/354 (56.78%), Query Frame = 1
Query:   28 APARSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQ---DERQTRRLAVLGAL-MPSGSLSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            +P R+   +L A    +R    AA   F E L  I+D +E  V  ASD +   L AVD + AA   +L+ DE L  +D + +    E ++G L +R   + DF A LE +E +RA  AG  L  LV  L+ IA + P EIER+ E  A E+NAV+I NR +HA LLA +E+  V     A+  W  RRE WR+LRHD A+++F  D  S+QF +PPER   F   RA Q   DE++ + +  + A+ +P  + +S  +          FK + XXXXXXXXXXXXXXXXXXXXXXX         R E+HRY ALA  P+L   A A+ +   DP +E+ FR +GGL+ EL+ L
Sbjct:   81 SPVRTEFPKLAARLLAKREAHDAAIQSFAEKLTLISDGIEIDVKTASDGVVDALEAVDQQTAAIFEELNRDELLVTKDASYLTETWEAIEGTLKDRHAVIRDFGARLEGLEQQRAKTAGGELRNLVDTLLRIAFKSPGEIERVVEGDAFELNAVIIANRKSHAELLALLEKKDVGVGLDAIEKWRLRREAWRQLRHDRAVKEFWEDLESQQFVNPPERSKRFEKIRADQLSSDEQRRKLIREVEAMTLPQSAKASEAK--------TKFKEIHXXXXXXXXXXXXXXXXXXXXXXXAALLRREDLRRELHRYGALAEEPELHEFADAVESIALDPEREDFFRSAGGLKPELRQL 426          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.620e-36
Identity = 130/374 (34.76%), Postives = 169/374 (45.19%), Query Frame = 1
Query:    1 VRMLSHQPRAPA--RSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDERQTRRLAVLGALMPSGSLSSS-------------LEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            VR L HQP  P+  RS   +LR  + +RR  DA A   FE  +  I++DME  VL AS  +R  L   +  +A   A+L  D+ L   D   V      L+     RS  + +F   LE VE  R+   G  L  LV  ++ IA R+P+EIER++EE A E+N V+I NR AHA LL  ME+     A      W+ RREDWRRLRHD AL  F AD  +  F +PPER  LF  F+  Q  R   R+A+L  L     + SS             L   +V  V   +  L                                 R E+H Y A    PDL A    + A       E+  RK+GGL+ EL AL
Sbjct:  115 VRTLHHQPLDPSQPRSGFEKLRKKQAERRERDARAIETFEAGVSAISEDMEQRVLEASYALRDGLEEAEEAVATIRAELGADDQLVQGDMAYVEEIWSKLEAQCNRRSSRIQEFREGLERVEILRSEAVGGELRRLVDDMIAIAFRMPDEIERIAEEHAHELNGVLISNRLAHAELLGTMEKRDFSFAVGIRRVWETRREDWRRLRHDRALVHFHADLTAPNFTNPPERVALFREFKKGQVLRHAERVALLRGLCHRRPVDSSAPGAVADDVSEGRLTTTAVREVREAYAILHGEEIAAILAAQEGLGSIREAKQNESEARREAVRAELHGYGAACTEPDLEACCMQVEAVAHARGLEDFMRKAGGLKHELLAL 488          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.200e-33
Identity = 128/361 (35.46%), Postives = 166/361 (45.98%), Query Frame = 1
Query:    1 VRMLSHQPRAPA--RSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDERQTRRLAVLGALMPSGSLSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            VR L HQP  P+  RS   +LR  + +RR  DA A   FE  +  I++DME  VL AS  +R  L   +  +A  LA+L  D+ L   D   V      L+     RS  + +F   LE VE  R+   G  L  LV  ++ IA R+P+EIER++EE A E+N V+I NR AHA LL  ME+           T   RREDWRRLRHD AL  F  D  +  F +P ER VLF  F+  Q  R   R+A+L  L     + SS   A       V  ++                                 R E+H Y A    PDL A    + A   D   E+  RK+GGL+ EL AL
Sbjct:   83 VRTLHHQPLDPSEPRSGFEKLRKKQAERRERDARAIETFEAGVSAISEDMEQRVLEASYALRDGLEEAEEAVATILAELGVDDQLVQGDMAYVEEMWSKLEAQCDRRSSRIQEFRKGLERVEILRSEAVGGELRRLVDDMIAIAFRMPDEIERIAEEHAHELNGVLISNRLAHAELLGTMEKRDF------AFTVGIRREDWRRLRHDRALVQFHTDLTAPNFTNPSERVVLFREFKKGQVLRHAERVALLRDLCRRRPVDSSAPGAVADDASEVGGSVDTFFHYDKWCACLV-------------------RAELHGYGAACTEPDLEACCVQVEAVAHDRGLEDFMRKAGGLKHELLAL 418          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: H3H2T6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2T6_PHYRM)

HSP 1 Score: 127 bits (318), Expect = 2.670e-28
Identity = 112/355 (31.55%), Postives = 170/355 (47.89%), Query Frame = 1
Query:   16 HQPRAPARSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDE-RQTRRLAVLGALMPSGSLSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            +Q R   +   S+++  + +RR     A + + + +  I++D+E A++RA+D +++ L  +DA I  A   L ++E L A D   + G    LD +   R+  +  FAA LE +E  R     A L  L   L++ A  LP E+ER+ E +A EVN VVI NR  +A+L ARM  A+V     A   W++ +  WR LRHDAA+  F A  +S  F DP ER+ +    R  Q+E    +RLAVL  L  +G+  SS E+A    +L    A                                  R E+H + A+A    +      L A  +D + E+ FR +GGL+ EL  L
Sbjct:  312 NQSRQKPKEGPSQIQLNDVRRRDRHMEAQMQYADEVKAISEDVEVAIIRAADQVKEVLVTIDAAIDEAKVALTSNELLLASDNESILGMWRELDAVCQRRTDEITQFAAQLEEIEQTRIHRVRAELQRLTSTLMETAHALPPEVERIIEAEAYEVNTVVISNRRVYADLAARMGTANVDAFLNARLDWEQGQMRWRVLRHDAAIARFQATLSSPLFTDPDERQQVLQQIRVFQEEVHAEQRLAVLKQLNDAGAALSS-EQAK--RILEELSATQQFEEEKNQSFFADLRELHESKRGAAKALREVLRLELHGFGAMAKEGAIEEAKGTLVALLSDDSMEDFFRAAGGLKAELDIL 663          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: G4YEK1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEK1_PHYSP)

HSP 1 Score: 122 bits (307), Expect = 6.950e-27
Identity = 103/328 (31.40%), Postives = 161/328 (49.09%), Query Frame = 1
Query:   97 ATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDE-RQTRRLAVLGALMPSGSLSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            A + + E +  I++D+E A++RA+D++++ L+A+DA I  A A L ++E L A D   +      L+ +   R+  +A FAA L+ +E  R      GL  L   L++ A  LP E+ER+ E +A EVN VVI NR  +A+L+ARM  A+V    +A   W++ +  WR LRH+ A+  F A   S  F DP ERR +    R  Q++  + +RL VL  L  +G+  SS E+A    +L                                       R E+H + A+A    +    + L +  +D   E+ FR +GGL+ EL  L
Sbjct:    3 AQMQYAEDVRAISEDVEVAIIRAADEVKEVLAAIDAGIREAQAALTDNELLLASDNESILAMWRELEAVCQRRTNEIARFAARLDEIEQTRIHRVRVGLQHLTHVLMETAHALPPEVERIIEAEAYEVNTVVISNRRVYADLVARMGTANVDEFLSARLAWEQGQVRWRHLRHEDAIDKFQATLNSPLFTDPEERRHVLEQIRVFQEKIHREQRLEVLKRLKDAGAALSS-EQAK--RILEELSTTQQFEEEKNQSFFSDLRGLHESKGDAAKSLREDLRLELHGFGAMAKEGAIEEAKSTLVSLLSDDTMEDFFRAAGGLKTELDTL 327          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A6A3F997_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F997_9STRA)

HSP 1 Score: 122 bits (306), Expect = 9.700e-27
Identity = 111/358 (31.01%), Postives = 171/358 (47.77%), Query Frame = 1
Query:   13 SHQPR-APARSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDE-RQTRRLAVLGALMPSGS-LSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            +HQP+  P++  L+     E +RR     A + +   +  I++D+E A++RA+DD+++ L+A+D  I  A A L +++ L A D   +      L+ +   RS  +  FAA L+ +E  R      GL  L   L++ A  LP E+ER+ E +A EVN VVI NR  +A+L+ARM  A+V     A   W++ +  WR LRHD A+  F A   S  F DP ERR +    R  Q++  + +RL VL  L  +G+ LSS L +     +L   +A                                  R E+H + A+A    +      L    +D + E  FR +GGL+ EL  L
Sbjct:   95 AHQPQEGPSQIELN-----EVRRRDRHMEAQMQYANEVKAISEDVEVAIIRAADDVKEVLAAIDDGIREAQAALTSNDLLLASDNESILTMWSELEAVCQRRSDEITRFAARLDEIEQTRIHRVRVGLQRLTHVLMETAHALPPEVERIIEAEAYEVNTVVISNRRVYADLVARMGTANVDVFLGARLAWEQGQIQWRHLRHDDAVAKFQATLDSPVFTDPEERRHVLQQIRVFQEKIHREQRLEVLKRLEEAGAALSSELAKR----ILEELRATQQLEEDANQSFSSDLRGLHQSKGDAAKALREDLRLELHGFGAMAKEGAIEEAKKTLVTLLSDDSMENFFRAAGGLKTELDTL 443          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A2D4BI97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI97_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 4.030e-24
Identity = 103/329 (31.31%), Postives = 147/329 (44.68%), Query Frame = 1
Query:   94 AATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDE-RQTRRLAVLGALMPSGSLSSSLEEASVAAVLAVFKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGLRQELKAL 1077
            AA   F + + ++++D+E+A+++A+D+++  L  VDA++ A      +   L   D  GV       +     RS  +A F   LE                L + L+D A  LPNE+ERL E +A E+N VVI NR A+A+L+AR+  A V     A   W+  +  WRRLRHD AL  F    AS QF DP ER+++ A  RA Q E    RRL VL  L     L + +   +V   L     +                                 R E+H + ALAP  D+      +     D   EE FR +GGLR EL  +
Sbjct:  342 AALRSFTDDVKRVSEDIESAIIQAADELKDALRRVDAQLTALDHAAHDAAALLLTDHDGVLQLWRETEVCCESRSQLIAVFRERLERXXXXXXXXXXXXXXGLTKTLMDTAHALPNEVERLIEAEAFELNVVVITNRKAYADLIARLASADVDVFLRARLQWEHGQTLWRRLRHDDALARFEHTLASTQFTDPRERQLVLAQIRAFQRELHDARRLPVLRRLQ---ELQADVTSTAVTKSLQELSEIQRLEEERNAFFFDELRVVHDAKVREALAMREALRLELHGFGALAPEGDITRCKQQIDGVLQDETLEEFFRMAGGLRNELDGI 667          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A0W8CNL9_PHYNI (DNA-directed RNA polymerase III subunit RPC8 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CNL9_PHYNI)

HSP 1 Score: 113 bits (282), Expect = 1.320e-23
Identity = 85/238 (35.71%), Postives = 126/238 (52.94%), Query Frame = 1
Query:    4 RMLSHQPRAPARSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVLFASFRAQQD 717
            ++L  QP  P++  L+ +R     RR     A + + E +  I +D+E A++RA+D +++ L+ VD  I  A + L N+E L A D   +      LD +   R+  +A FAA LE +E  R      GL  L   L++ A  LP E+ER+ E +A EVN VVI NR  +A+L+ARME A+V     A   W++ +  WR LRH+  +  F A   S  F DP ER+ L    R  Q+
Sbjct:  315 KLLQTQPEGPSQIELNAVR-----RRDRHMEAQMQYGEEVKAIREDVEVAIIRAADHVKEVLATVDLAIQEAKSALTNNELLLASDNYKILRMWSELDAVCQRRTDEIAQFAAQLEEIEQSRINRIRMGLQRLTCVLMETAHALPPEVERIIEAEAYEVNTVVISNRRVYADLVARMETANVDVFLNARLAWEQGQIRWRHLRHEDVIAKFQATLNSPLFTDPEERQQLLEQIRVFQE 547          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A7S2CXH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CXH5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-18
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = 1
Query:  109 FEELLVQIADDMEAAVLRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRR 588
            FE  L +I+DD+E  V+ AS  +++  ++ D RI     +L+ D  L  +D   V  + + +  +  +R   +  FAA LE +E  RA      L  LV RL+ +A     EIERL EE+A E+N V+++NR +HA LLA ME+ HVL    A  +W+ R
Sbjct:   16 FELKLTEISDDLEIRVMHASRGVQKATASNDQRIGETFGELNQDLLLVTKDHQYVLDSWDEIHAVCEKRFADIRGFAAELEGIERDRARVVATELRQLVERLMGVAYMPGTEIERLVEEQAFELNTVIVLNRKSHAELLALMEKQHVLVCMDARVSWEAR 175          
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Match: A0A0G4IJ88_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJ88_PLABS)

HSP 1 Score: 67.0 bits (162), Expect = 2.410e-8
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  238 DEWLAARDETGVAGARENLDGLLAERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERLSEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRRLRHDAALRDFAADAASEQFADPPERRVL 690
            D+ L   + +   G  E ++   A R      F A L+ +E RR  +  + + A+V  LVDI  +LP EIE+  E +   VN +++ NR A  +L+AR+  A V       A W+ RR  W+ LRH   +    A+  S ++ +P  RR +
Sbjct:   85 DDVLIEMELSDFEGLWETVEREFASREATWVQFEADLQTIERRRQVDMSSEIQAVVAELVDIGFQLPEEIEKDFEPEVNSVNELIVSNRVAFLDLIARLRVADVRLKDRQNAIWEGRRGAWKTLRHRRCMEIARAELNSPEWVNPGSRRRI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7894.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8J2WRK2_9STRA5.060e-4041.53Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
D7FNW1_ECTSI2.620e-3634.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM06_9PHAE5.200e-3335.46DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
H3H2T6_PHYRM2.670e-2831.55Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YEK1_PHYSP6.950e-2731.40Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3F997_9STRA9.700e-2731.01Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A2D4BI97_PYTIN4.030e-2431.31Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0W8CNL9_PHYNI1.320e-2335.71DNA-directed RNA polymerase III subunit RPC8 n=9 T... [more]
A0A7S2CXH5_9STRA1.900e-1836.88Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A0G4IJ88_PLABS2.410e-831.13Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7894contigP-wetherbeei_contig7894:1661..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009042039.1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size1077
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.77e-44
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size1071
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.314255-UTR-P-wetherbeei_contig7894:1660..16661683187007.314255-UTR-P-wetherbeei_contig7894:1660..1666Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7894 1661..1666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.326464-CDS-P-wetherbeei_contig7894:1666..24081683187007.326464-CDS-P-wetherbeei_contig7894:1666..2408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7894 1667..2408 +
1683187007.3380613-CDS-P-wetherbeei_contig7894:2615..29441683187007.3380613-CDS-P-wetherbeei_contig7894:2615..2944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7894 2616..2944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7894.2.1prot_P-wetherbeei_contig7894.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7894 1667..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7894.2.1

>prot_P-wetherbeei_contig7894.2.1 ID=prot_P-wetherbeei_contig7894.2.1|Name=mRNA_P-wetherbeei_contig7894.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=357bp
MLSHQPRAPARSSLSRLRAAEEKRRCLDAAATVGFEELLVQIADDMEAAV
LRASDDIRQRLSAVDARIAAALADLDNDEWLAARDETGVAGARENLDGLL
AERSGCLADFAAALEAVEARRAAEAGAGLHALVRRLVDIAARLPNEIERL
SEEKALEVNAVVIMNRGAHANLLARMERAHVLTAAAAVATWDRRREDWRR
LRHDAALRDFAADAASEQFADPPERRVLFASFRAQQDERQTRRLAVLGAL
MPSGSLSSSLEEASVAAVLAVFKALHEEEVAAATAAAEGLEAIREAGAVT
AAARVEALRHEIHRYAALAPAPDLPAHAAALAAATADPAQEETFRKSGGL
RQELKAL
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mRNA from alignment at P-wetherbeei_contig7894:1661..2944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7894.2.1 ID=mRNA_P-wetherbeei_contig7894.2.1|Name=mRNA_P-wetherbeei_contig7894.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig7894:1661..2944+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCGAATGCTTAGCCACCAGCCGCGCGCACCGGCCCGTTCGAGCCTGTC GCGGCTGCGCGCCGCCGAGGAGAAGCGCCGCTGCCTCGATGCTGCCGCGA CCGTGGGCTTCGAAGAGTTGCTCGTCCAGATCGCGGACGATATGGAGGCG GCCGTCCTGCGGGCATCCGACGACATCCGGCAGCGGCTCTCCGCCGTCGA CGCCAGAATCGCCGCCGCGCTGGCGGATCTCGACAACGACGAGTGGCTCG CCGCCCGCGACGAGACTGGTGTCGCTGGCGCCCGCGAAAATCTTGACGGC TTGCTGGCGGAGCGCTCCGGCTGCCTCGCCGATTTCGCGGCAGCGCTCGA GGCGGTCGAGGCCCGCCGCGCGGCAGAAGCCGGCGCAGGTTTGCACGCGC TGGTCCGCCGGCTAGTCGACATTGCCGCCCGCCTGCCGAACGAAATCGAG CGGCTCTCTGAAGAAAAGGCACTGGAAGTCAATGCGGTCGTCATCATGAA CCGCGGCGCACACGCCAACCTGCTGGCGCGGATGGAGCGGGCGCACGTGT TGACGGCGGCCGCGGCGGTAGCCACGTGGGACCGGCGGCGAGAGGACTGG CGGCGGCTGCGGCACGACGCCGCGTTGCGCGACTTTGCCGCCGACGCCGC CTCAGAGCAGTTCGCAGATCCGCCGGAGCGCCGCGTCCTGTTCGCGTCCT TTCGGGCGCAGCAGGACGAGCGTCAGACCCGCCGGCTTGCTGTATTGGGT CGCCTGGCGGCCATGCGACCCGGAGCGGGGATGGGCACGAATCTGTCGGC ATCGGCGTCGGCACTGCCGCCGCCGCAGCCGCCACCGCAGCAGCAACATC AACATTCGGCGTCGCCGGTTCGAAAATCTGTTTCAGCGAGAGCAGCATCC CCGCCATCAGCGACAGCGACAACTGCCGCACCATTGGCACTGACATCGGC CAAAGGGGCATTGATGCCTTCGGGATCGTTATCATCGTCATTGGAGGAAG CGTCGGTGGCGGCGGTGCTTGCCGTCTTCAAGGCGCTGCACGAAGAGGAA GTCGCGGCGGCGACTGCAGCCGCCGAAGGCCTCGAGGCGATCCGCGAAGC CGGCGCTGTTACTGCCGCTGCCCGTGTCGAGGCGCTCCGCCATGAGATCC ACCGCTATGCGGCGCTGGCGCCGGCGCCGGACCTGCCGGCGCACGCCGCG GCACTGGCGGCCGCCACCGCCGATCCCGCCCAGGAGGAAACGTTCCGGAA GTCGGGCGGCCTCCGGCAGGAGCTTAAGGCATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7894:1661..2944+

>mRNA_P-wetherbeei_contig7894.2.1 ID=mRNA_P-wetherbeei_contig7894.2.1|Name=mRNA_P-wetherbeei_contig7894.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig7894:1661..2944+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTAGCCACCAGCCGCGCGCACCGGCCCGTTCGAGCCTGTCGCGGCT
GCGCGCCGCCGAGGAGAAGCGCCGCTGCCTCGATGCTGCCGCGACCGTGG
GCTTCGAAGAGTTGCTCGTCCAGATCGCGGACGATATGGAGGCGGCCGTC
CTGCGGGCATCCGACGACATCCGGCAGCGGCTCTCCGCCGTCGACGCCAG
AATCGCCGCCGCGCTGGCGGATCTCGACAACGACGAGTGGCTCGCCGCCC
GCGACGAGACTGGTGTCGCTGGCGCCCGCGAAAATCTTGACGGCTTGCTG
GCGGAGCGCTCCGGCTGCCTCGCCGATTTCGCGGCAGCGCTCGAGGCGGT
CGAGGCCCGCCGCGCGGCAGAAGCCGGCGCAGGTTTGCACGCGCTGGTCC
GCCGGCTAGTCGACATTGCCGCCCGCCTGCCGAACGAAATCGAGCGGCTC
TCTGAAGAAAAGGCACTGGAAGTCAATGCGGTCGTCATCATGAACCGCGG
CGCACACGCCAACCTGCTGGCGCGGATGGAGCGGGCGCACGTGTTGACGG
CGGCCGCGGCGGTAGCCACGTGGGACCGGCGGCGAGAGGACTGGCGGCGG
CTGCGGCACGACGCCGCGTTGCGCGACTTTGCCGCCGACGCCGCCTCAGA
GCAGTTCGCAGATCCGCCGGAGCGCCGCGTCCTGTTCGCGTCCTTTCGGG
CGCAGCAGGACGAGCGTCAGACCCGCCGGCTTGCTGTATTGGGGGCATTG
ATGCCTTCGGGATCGTTATCATCGTCATTGGAGGAAGCGTCGGTGGCGGC
GGTGCTTGCCGTCTTCAAGGCGCTGCACGAAGAGGAAGTCGCGGCGGCGA
CTGCAGCCGCCGAAGGCCTCGAGGCGATCCGCGAAGCCGGCGCTGTTACT
GCCGCTGCCCGTGTCGAGGCGCTCCGCCATGAGATCCACCGCTATGCGGC
GCTGGCGCCGGCGCCGGACCTGCCGGCGCACGCCGCGGCACTGGCGGCCG
CCACCGCCGATCCCGCCCAGGAGGAAACGTTCCGGAAGTCGGGCGGCCTC
CGGCAGGAGCTTAAGGCATTG
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