mRNA_P-wetherbeei_contig7894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7894.1.1
Unique NamemRNA_P-wetherbeei_contig7894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 1.320e-139
Identity = 175/264 (66.29%), Postives = 206/264 (78.03%), Query Frame = 3
Query:   63 ELFLVSFLSLLLAPLEANGGCALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALA 854
            + FL+   S +   ++ N GC+L NWCNGHG+C+TGT TCTCYEGWGADTD+TLYRA DCS+RVCP+GKAWG +PT    AH E ECS  G+CD+ +GEC CF GF GA+C RS CP+ CS HGRC +MK +A  SDALPLS+VTTYSGE+D  TWDE+M++GCVCDS W+VGLG+G+TQ PEWFGPDCSLRHCPSGDDP+T  DETDCFNVT   V+   AG  GNLCH DCS RG CDY  GLC+CF GYYG NC  +S LA
Sbjct:    5 KFFLLLVSSWIFTTVQGNAGCSLFNWCNGHGTCNTGTRTCTCYEGWGADTDLTLYRAADCSARVCPAGKAWGDVPTGSLSAHQEQECSGRGLCDRDSGECECFDGFTGAACERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSGEDDTVTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSVLA 268          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A8K1CPX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPX8_PYTOL)

HSP 1 Score: 322 bits (825), Expect = 1.170e-107
Identity = 138/231 (59.74%), Postives = 171/231 (74.03%), Query Frame = 3
Query:  141 CNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNC 833
            CNGHG C+T T TCTC+EG+GA TDV +Y+APDCS RVCP+G +WGG+PT ET AH  AECS+ G+CD+ +G+C C+ G+ G++C RS C N CSGHGRC SM+ MAT++ A PLS   TY G ED  TWD++ ++GC+CDSSW VGLGSG+ Q  EWFGPDCSL  CP+GDDP T  DETDC   T     S+  G+ GN CH DC+ RG+CDY  G C CF G+YG+NC
Sbjct:    5 CNGHGRCNTATKTCTCFEGYGAATDVAVYKAPDCSQRVCPAGPSWGGIPTDETVAHALAECSDMGVCDRSSGQCKCYRGYEGSACQRSTCLNGCSGHGRCVSMREMATITSAFPLSPAATYEGAEDTTTWDQNRIFGCLCDSSWAVGLGSGQRQQSEWFGPDCSLLRCPTGDDPLTAVDETDCNGKTA--TDSTSVGQPGNRCHVDCANRGICDYTSGTCMCFSGFYGSNC 233          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A7S1CQ07_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ07_9STRA)

HSP 1 Score: 322 bits (826), Expect = 3.500e-107
Identity = 152/272 (55.88%), Postives = 180/272 (66.18%), Query Frame = 3
Query:   66 LFLVSFLSLLLAPLEANGGCALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPL---SDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVT--GIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALAVTKK 866
            L L   ++  LA     G C     CNGHG+C+T T+ C CY+GWG+ +DVT YRAPDCS RVCPSG AW    T+   AH  AECSNAGICD+ TG+C CF+G+ G +C RS CPN CSGHG+C S+  MA+ ++A P+   S   TY G E  ATWDED ++GCVCDSSW V L SG TQ PEWFG DCSLRHC SGDDP T  DETDC      G  V     G  GNLCH DC+ RG+C+Y  G+C CFDG+YG  C L+S LAV  K
Sbjct:   11 LVLAVAVAAALAGRADAGACVDLGDCNGHGTCNTATTQCACYDGWGSSSDVTTYRAPDCSKRVCPSGNAWADAATATNTAHALAECSNAGICDRTTGKCRCFTGYDGEACQRSACPNECSGHGKCVSIAQMASENNAQPVDIESPAFTYGGSEAVATWDEDKIFGCVCDSSWTVSLASGATQEPEWFGADCSLRHCASGDDPMTTADETDCVGKVRNGQTVAGRTGGVAGNLCHVDCANRGICNYNTGICDCFDGFYGVACTLQSELAVGDK 282          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: G5A2N6_PHYSP (EGF-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G5A2N6_PHYSP)

HSP 1 Score: 320 bits (819), Expect = 3.180e-106
Identity = 140/244 (57.38%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  123 CALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALA 854
            CA  + CN HG CD  T TC C EG+GA TD+T YR+PDCS R CP+G +WGG+PTS T +H +AECS+AG+CD+ TG C C+ G+ G++C RS CPN CSGHG+C SM+ +AT + A PLS  TTY G+    TWD+D + GC+CDS W VGLG+GE+Q  +WFGPDCS  HCPSGDDP T EDETDC  V  +       G  GNLCH DC+ RG+CDY  G+C CF G+YG+NC   S LA
Sbjct:   35 CAALSNCNAHGRCDALTKTCECNEGYGASTDITNYRSPDCSLRTCPAGPSWGGIPTSATTSHAKAECSDAGVCDRSTGTCMCYYGYEGSACQRSTCPNGCSGHGQCLSMRELATETSAFPLSPATTYGGDVTATTWDQDRIQGCLCDSYWPVGLGAGESQLSQWFGPDCSRMHCPSGDDPMTAEDETDCEGV--VAAGGVGPGAAGNLCHVDCANRGICDYSSGVCSCFPGFYGSNCASLSPLA 276          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: W2Q018_PHYPN (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q018_PHYPN)

HSP 1 Score: 316 bits (810), Expect = 7.130e-105
Identity = 145/270 (53.70%), Postives = 181/270 (67.04%), Query Frame = 3
Query:   48 CCVSVELFLVSFLSLLLAPLEANGG--CALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSAL 851
            C   V +F+++   L+ A L    G  CA  N CN HG CD  T TCTCYEG+GA TD+T YR+PDCS R+CP+G +WGG+PTS T +H + ECS AG+CD+ TG C C+ GF G++C RS CPNSCSGHG+C SM+ +A    A PLS  T Y G+    TWD+D + GC+CDSSW VGLG+GE+Q  ++FGPDCS  HCPSGDDP T  DETDC  V  +       G   NLCH DC+ RG+C+Y  G C CF G+YG+NC   S L
Sbjct:    7 CTTLVCVFVIAICPLVRAQLGVPTGNLCAALNNCNAHGRCDALTKTCTCYEGFGAPTDITNYRSPDCSLRICPAGPSWGGIPTSATISHPKEECSGAGVCDRTTGTCICYYGFEGSACQRSSCPNSCSGHGQCLSMRELAAAPSAFPLSPPTKYEGDVTATTWDQDRIQGCLCDSSWPVGLGAGESQLSQYFGPDCSRMHCPSGDDPMTAVDETDCEGV--VADGGGGTGAPDNLCHVDCANRGICNYNSGECSCFSGFYGSNCASLSPL 274          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A2P4X7I9_9STRA (EGF-like domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7I9_9STRA)

HSP 1 Score: 314 bits (804), Expect = 5.060e-104
Identity = 150/275 (54.55%), Postives = 184/275 (66.91%), Query Frame = 3
Query:   42 AYCCVSVELFLVSFLSLLLAPLEANGG--CALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCS--SRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALA 854
            A+ C+ V    ++  +L  A L    G  CA  N CN HG CD  T TCTCYEG+GA TDVT YR+PDCS  +R CP+G +WGG+PTS T +H +AECS AGICD+ +G C C+ G+ G++C RS CPNSCSGHG+C SM+ MA  S A PLS  T Y G+    TWD+D + GC+CDSSW VGLG+GE+Q  ++FGPDCS  HCPSGDDP T  DETDC  +  I       G   NLCH DC+ RG+CDY  G C CF G+YG+NC   S LA
Sbjct:    3 AFLCLGV----IASCTLTCAQLGVPTGNLCASLNNCNAHGRCDALTKTCTCYEGFGAPTDVTNYRSPDCSLRTRTCPAGPSWGGIPTSATTSHPKAECSGAGICDRSSGTCICYYGYEGSACQRSSCPNSCSGHGQCLSMREMAMESSAFPLSPPTKYEGDVTATTWDQDRIQGCLCDSSWPVGLGAGESQLAQYFGPDCSRMHCPSGDDPMTAVDETDCEGI--IAAGGGGTGAADNLCHVDCANRGICDYSRGECSCFPGFYGSNCASLSPLA 271          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A835YN50_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.660e-102
Identity = 145/259 (55.98%), Postives = 173/259 (66.80%), Query Frame = 3
Query:  120 GCALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLS-DVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDP--------NTYEDETDCFNVTGI----FVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALAV 857
            GC  HN CNGHG C    + C CYEGWGAD+D++LY+A DCS+RVCPSG AWG +PT++  AH   ECS  G+CD+ +G C CF+GF G +C R  CPN+CSGHGRC S+K M    +ALPLS +   Y G+E   TWDED ++GCVCDSSW VGL + ETQA EWFGPDCSLRHCPSG+DP        +  E      N  G+     V     G  GNLCH DCSGRGVCDY  G+C+CF+GYYG NC     LAV
Sbjct:   38 GCDQHNNCNGHGVCSQQDAVCLCYEGWGADSDISLYKAQDCSARVCPSGPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKNMVNEPNALPLSSNAHEYGGDELATTWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGNDPAQLQLTPAHPAEKPILTINCEGVATPGVVEKDSEGAEGNLCHVDCSGRGVCDYATGVCQCFNGYYGQNCGTVDVLAV 296          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A8J2X5G2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5G2_9STRA)

HSP 1 Score: 307 bits (786), Expect = 1.940e-101
Identity = 148/260 (56.92%), Postives = 170/260 (65.38%), Query Frame = 3
Query:   78 SFLSLLLAPLEANGGCALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDP-NTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSALA 854
            S + LLL P  A G C   N+CNGHG C+  T TC CYEGWGA TDV LY+  DCS R CPSG AW  + +    AH  AECS  G C++ TG C C SGF G +C R  C   CSGHG+C SMK MATM +ALPLS   TY+G E    WD+D +YGCVCDSSW VGLG G+ Q PEWFGP CSLRHCPSGDDP  T+ DET+C  VT    +    GE GNLC  DC+ RG CD   G C C+ G YG++C L SALA
Sbjct:    4 SLVLLLLRPTRA-GDCIDMNFCNGHGHCEPATDTCDCYEGWGAKTDVALYKLHDCSGRTCPSGPAWADVASDSKTAHAPAECSGKGTCNKATGTCKCVSGFSGDACQRFGCLYDCSGHGQCVSMKKMATMPNALPLSKPATYTGLETTERWDQDRIYGCVCDSSWPVGLGPGQRQEPEWFGPWCSLRHCPSGDDPYTTHVDETNCTGVTAAGGYG--VGEKGNLCQVDCANRGKCDTETGECSCWTGSYGHDCTLLSALA 260          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A833WEK2_PHYIN (EGF-like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WEK2_PHYIN)

HSP 1 Score: 307 bits (787), Expect = 2.190e-101
Identity = 140/270 (51.85%), Postives = 176/270 (65.19%), Query Frame = 3
Query:   48 CCVSVELFLVSFLSLLLAPLEANGG--CALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNCNLRSAL 851
            C V V +   +   L+   L    G  CA  N CN HG CD  T TCTCYEG+GA TD+T YR+PDCS R CP+G +WGG+P S T +H + ECS AG+CD+ TG C C+ G+ G++C RS CPNSCSGHG+C SM+ +A    A PLS  T Y G+    TWD+D + GC+CDS+W VGLG+GE+Q  ++FGPDCS  HCPSGDDP T  DET C  +  +    +  G   NLCH DC+ RG+CDY  G C CF G+YG+NC   S L
Sbjct:    7 CAVLVYVVASAICPLVRGQLGVPTGNLCAALNNCNAHGRCDALTKTCTCYEGFGAPTDITNYRSPDCSMRTCPAGPSWGGIPNSATTSHPKEECSGAGVCDRNTGTCFCYYGYEGSACQRSSCPNSCSGHGQCMSMRELAVEPSAFPLSPPTKYEGDVRATTWDQDRIQGCLCDSTWPVGLGAGESQLSQYFGPDCSKMHCPSGDDPMTAVDETKCVGI--VATGGAGTGGPDNLCHVDCANRGICDYNTGECSCFSGFYGSNCASLSPL 274          
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 307 bits (786), Expect = 2.220e-101
Identity = 133/237 (56.12%), Postives = 169/237 (71.31%), Query Frame = 3
Query:  123 CALHNWCNGHGSCDTGTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEAECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATMSDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWFGPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSGRGVCDYRVGLCKCFDGYYGNNC 833
            C+  + CNGHG C T + TC C+EG+GA +D+T Y++PDCS RVCPSG +W G+PT+   AH   ECS+AG CD+ +G+C CF+G+ GA+C R  CPN CSGHG+C SM+ MA +++A PLS  TTY+G E   TWD++ ++GCVCDSSWDVGL +G+ Q+ +WFG DCSL  CPSGDDP T  DETDC     +       GETGN CH DCS RG CDY  G C CF G+YG+NC
Sbjct:   24 CSALSNCNGHGRCVTASKTCICFEGYGATSDITSYKSPDCSKRVCPSGPSWAGIPTAANSAHPRTECSDAGYCDRSSGQCRCFAGYDGAACQRYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEATTTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGK--LAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNC 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYV5_ECTSI1.320e-13966.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CPX8_PYTOL1.170e-10759.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1CQ07_9STRA3.500e-10755.88Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
G5A2N6_PHYSP3.180e-10657.38EGF-like domain-containing protein n=4 Tax=Phytoph... [more]
W2Q018_PHYPN7.130e-10553.70EGF-like domain-containing protein n=10 Tax=Phytop... [more]
A0A2P4X7I9_9STRA5.060e-10454.55EGF-like domain-containing protein n=1 Tax=Phytoph... [more]
A0A835YN50_9STRA1.660e-10255.98EGF-like domain-containing protein n=1 Tax=Tribone... [more]
A0A8J2X5G2_9STRA1.940e-10156.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A833WEK2_PHYIN2.190e-10151.85EGF-like domain n=1 Tax=Phytophthora infestans Tax... [more]
A0A5D6XZL0_9STRA2.220e-10156.12EGF-like domain-containing protein n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7894contigP-wetherbeei_contig7894:258..1200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYV5
PFAMsEGF_2
Model size943
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1e-140
EggNOG OGs2A4YC@1|root,2RY8D@2759|Eukaryota
Ec32 ortholog descriptionSecreted EGF-like domain protein
Ec32 orthologEc-19_002620.1
DescriptionEGF-like domain
Cds size852
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.2679744-UTR-P-wetherbeei_contig7894:257..3311683187007.2679744-UTR-P-wetherbeei_contig7894:257..331Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7894 258..331 -
1683187007.2876394-UTR-P-wetherbeei_contig7894:1183..12001683187007.2876394-UTR-P-wetherbeei_contig7894:1183..1200Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7894 1184..1200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.2793329-CDS-P-wetherbeei_contig7894:331..11831683187007.2793329-CDS-P-wetherbeei_contig7894:331..1183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7894 332..1183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7894.1.1prot_P-wetherbeei_contig7894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7894 332..1183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7894.1.1

>prot_P-wetherbeei_contig7894.1.1 ID=prot_P-wetherbeei_contig7894.1.1|Name=mRNA_P-wetherbeei_contig7894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MKEPTLWTAYCCVSVELFLVSFLSLLLAPLEANGGCALHNWCNGHGSCDT
GTSTCTCYEGWGADTDVTLYRAPDCSSRVCPSGKAWGGLPTSETEAHVEA
ECSNAGICDQITGECTCFSGFVGASCGRSECPNSCSGHGRCASMKTMATM
SDALPLSDVTTYSGEEDGATWDEDMVYGCVCDSSWDVGLGSGETQAPEWF
GPDCSLRHCPSGDDPNTYEDETDCFNVTGIFVHSSFAGETGNLCHNDCSG
RGVCDYRVGLCKCFDGYYGNNCNLRSALAVTKK*
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mRNA from alignment at P-wetherbeei_contig7894:258..1200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7894.1.1 ID=mRNA_P-wetherbeei_contig7894.1.1|Name=mRNA_P-wetherbeei_contig7894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=943bp|location=Sequence derived from alignment at P-wetherbeei_contig7894:258..1200- (Phaeothamnion wetherbeei SAG_119_79)
CCAGGCGCTCCCAAAACATGAAAGAACCCACTTTGTGGACGGCGTATTGC TGCGTTAGCGTCGAACTTTTCCTTGTTTCCTTCCTTTCCCTCCTTCTCGC TCCTCTCGAGGCGAACGGGGGTTGCGCCCTCCACAACTGGTGTAATGGCC ACGGCTCGTGCGATACGGGCACGTCGACGTGCACCTGCTACGAAGGTTGG GGAGCAGACACGGACGTGACGTTGTACCGCGCTCCCGACTGCTCGTCGCG GGTCTGCCCGTCTGGAAAAGCCTGGGGAGGTCTTCCCACGTCTGAGACCG AGGCGCACGTCGAGGCGGAATGCTCGAACGCCGGAATCTGCGACCAGATA ACCGGCGAGTGCACCTGCTTCTCGGGCTTCGTGGGCGCGTCCTGCGGCCG GAGTGAATGCCCCAACAGCTGCTCCGGTCACGGGCGCTGCGCCAGCATGA AGACCATGGCGACGATGAGCGACGCGCTCCCGCTCTCCGACGTTACAACC TACTCCGGAGAAGAAGACGGCGCCACGTGGGACGAGGACATGGTCTATGG CTGTGTCTGCGACAGCTCGTGGGACGTCGGCCTCGGCTCGGGCGAGACAC AGGCGCCGGAGTGGTTCGGGCCGGACTGCTCGCTGCGGCACTGCCCGTCC GGCGACGACCCCAATACATACGAAGACGAGACGGACTGCTTCAATGTCAC GGGGATCTTCGTACACAGTTCCTTTGCCGGGGAGACGGGCAACCTGTGCC ACAACGACTGCTCAGGCCGCGGCGTGTGCGACTACCGCGTGGGGCTCTGC AAGTGCTTCGACGGCTACTACGGGAACAACTGCAACCTGCGGTCGGCGCT GGCCGTCACCAAGAAGTAGCAACGCACCACAGAGGCGAAAAGATAGCAAG TTATTTTATTAACACAAGACGTTCAAACCACTGCAATTCCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7894:258..1200-

>mRNA_P-wetherbeei_contig7894.1.1 ID=mRNA_P-wetherbeei_contig7894.1.1|Name=mRNA_P-wetherbeei_contig7894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig7894:258..1200- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGAACCCACTTTGTGGACGGCGTATTGCTGCGTTAGCGTCGAACT
TTTCCTTGTTTCCTTCCTTTCCCTCCTTCTCGCTCCTCTCGAGGCGAACG
GGGGTTGCGCCCTCCACAACTGGTGTAATGGCCACGGCTCGTGCGATACG
GGCACGTCGACGTGCACCTGCTACGAAGGTTGGGGAGCAGACACGGACGT
GACGTTGTACCGCGCTCCCGACTGCTCGTCGCGGGTCTGCCCGTCTGGAA
AAGCCTGGGGAGGTCTTCCCACGTCTGAGACCGAGGCGCACGTCGAGGCG
GAATGCTCGAACGCCGGAATCTGCGACCAGATAACCGGCGAGTGCACCTG
CTTCTCGGGCTTCGTGGGCGCGTCCTGCGGCCGGAGTGAATGCCCCAACA
GCTGCTCCGGTCACGGGCGCTGCGCCAGCATGAAGACCATGGCGACGATG
AGCGACGCGCTCCCGCTCTCCGACGTTACAACCTACTCCGGAGAAGAAGA
CGGCGCCACGTGGGACGAGGACATGGTCTATGGCTGTGTCTGCGACAGCT
CGTGGGACGTCGGCCTCGGCTCGGGCGAGACACAGGCGCCGGAGTGGTTC
GGGCCGGACTGCTCGCTGCGGCACTGCCCGTCCGGCGACGACCCCAATAC
ATACGAAGACGAGACGGACTGCTTCAATGTCACGGGGATCTTCGTACACA
GTTCCTTTGCCGGGGAGACGGGCAACCTGTGCCACAACGACTGCTCAGGC
CGCGGCGTGTGCGACTACCGCGTGGGGCTCTGCAAGTGCTTCGACGGCTA
CTACGGGAACAACTGCAACCTGCGGTCGGCGCTGGCCGTCACCAAGAAGT
AG
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