mRNA_P-wetherbeei_contig789.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig789.6.1
Unique NamemRNA_P-wetherbeei_contig789.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig789.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig789contigP-wetherbeei_contig789:4757..7298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1646
Hectar predicted targeting categoryother localisation
Exons4
Cds size672
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig789.6.1prot_P-wetherbeei_contig789.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig789 5344..6911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.996-UTR-P-wetherbeei_contig789:4756..53431683187006.996-UTR-P-wetherbeei_contig789:4756..5343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 4757..5343 -
1683187007.0481472-UTR-P-wetherbeei_contig789:6911..72981683187007.0481472-UTR-P-wetherbeei_contig789:6911..7298Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 6912..7298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.007271-CDS-P-wetherbeei_contig789:5343..54781683187007.007271-CDS-P-wetherbeei_contig789:5343..5478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 5344..5478 -
1683187007.0179822-CDS-P-wetherbeei_contig789:5784..58681683187007.0179822-CDS-P-wetherbeei_contig789:5784..5868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 5785..5868 -
1683187007.028147-CDS-P-wetherbeei_contig789:6178..62861683187007.028147-CDS-P-wetherbeei_contig789:6178..6286Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 6179..6286 -
1683187007.0382373-CDS-P-wetherbeei_contig789:6566..69111683187007.0382373-CDS-P-wetherbeei_contig789:6566..6911Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 6567..6911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig789.6.1

>prot_P-wetherbeei_contig789.6.1 ID=prot_P-wetherbeei_contig789.6.1|Name=mRNA_P-wetherbeei_contig789.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MATATLATRLIEGPQCINRGTEQLEVFSSFGDKFILAISEEPTVELVKQE
ASARLGLSPRDISVRQAGAILRDGAVVDTATPVELSYELRGGGNAGLTLE
TSFPALCRFDFLCWKCGVGSLPGDVMRETWCESHLCCCFNRCGPNDCVGL
QVLCLRCWPNPSVDTTMPHCLTIKILCEEFGVDRTRMDMRRDDWMSNKLC
CIFSSCGLTNWQECQLLCVRCTF*
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mRNA from alignment at P-wetherbeei_contig789:4757..7298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig789.6.1 ID=mRNA_P-wetherbeei_contig789.6.1|Name=mRNA_P-wetherbeei_contig789.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2542bp|location=Sequence derived from alignment at P-wetherbeei_contig789:4757..7298- (Phaeothamnion wetherbeei SAG_119_79)
AGGAAGGATGTGATTGGTTTCCTGTTACCTTTGTTAAGATAGGAAAAGCT
AAAGAGAAGCTTTGTGATTGCCGACCAACGTTTGTTTTCCTTTTCCTTAA
ATGCAAAGGAGCTTCGAGGAGCCTCTTAACGAAGTCGCCCACAGGGCAGA
GTTAGATGAGGCAACAAGAAGGAGAGCGCATTACACTCTTCGTCTTTGCT
GATGAGTCGCTGAATGAGGGGTGAATCTCGGAAAATATTGCATTCCCATG
AGGACGTCTGGTCGAAGCTCTTACCACATGAAAGGTCCCTGCATCGCTGA
CCTCACATTTACCCATCAAACCTGAAATCAAAGCCGACAGAAACGGGACC
GACAACGACAAGAGGCCGCTCCCCCAAAAAACAAAGAATGGCGACCGCAA
CCCTAGCGACGCGCTTGATCGAAGGGCCCCAGTGCATCAACCGCGGCACG
GAGCAGCTCGAGGTCTTCTCCAGCTTTGGCGACAAGTTCATCCTCGCCAT
TAGCGAGGAGCCGACCGTCGAACTCGTCAAGCAGGAAGCATCCGCCCGCC
TCGGACTGTCGCCGCGAGACATCTCCGTGCGACAGGCCGGCGCCATTCTC
CGCGACGGTGCCGTCGTCGACACAGCGACGCCGGTTGAGCTCTCGTATGA
ACTGCGCGGCGGCGGCAACGCCGGCTTGACGCTCGAGACTTCTTTCCCGG
CGCTTTGCCGCTTCGACTTCCTGTGCTGGAAGGTGAGGAAGGAGACGGAT
GCTGACGCTATGGTGTTAAGAAATTGCGAACGGGAGTTATGGGTCTTTTA
TCTTAGTTGGCCAATGCGCGTTGTGAGCTTTTTATTACCTTCGGATTGGT
GCGGCGGCCCTGAGTGTTCCCTTTCCACTCGCTCTTTCTCCTCTTTCGCC
GAGCTTTACGACATATGCCCCGCGCCGCATCCGCAATCCTTCCCCCCGTC
ACGATCAATGGCGTGCCCGGCCCGCCCCGAGCTGTCGCCGACCCGCCCGA
TGGATTCTGCAGTGCGGCGTGGGTAGCTTGCCGGGCGACGTCATGCGCGA
AACGTGGTGCGAGAGCCACCTCTGCTGCTGCTTTAATCGCTGCGGCCCCA
ATGACTGCGTCGGGCTTCAGGTGCGGCTGGTGTGATTTGCGGATGGAAAA
TGGAGCCCGCGGGAATGGAGGCCTGCTTGCTCGGCTGCTTTGCCTCGAAC
GGGACAGGAAGCGCTGCATGAAAACGACAAAATGTCTTCGCCTCAATGAC
TGTGTCGGACTTGTCTTCTAATTTACTTTCGCAATGATTGATGAAAAGGC
CCAAAAGTATGAAATAAGATGCGATGCAGTAATTAAAGCGTTCTGTAACC
GGCGCGTACTACCTCTGTCACCACCGCCGCCCGCCGCTCCGCCGACCGCC
ACCGCCGCTGTCGCCTTCTTCCCTGTGCAGGTACTGTGCCTGCGCTGCTG
GCCCAACCCGTCGGTTGACACCACCATGCCGCATTGCCTCACCATCAAGA
TCCTCTGTGAGGAGGTGTGTTCTTTTGCCGTCAGTCCCCTCGTGCTTGTG
GCATCATGAATGAAGCCGGGGATACTGCACTTAAGTCAGCAAAGGAGAGA
TGTTGCCTCCTCCGAGTGTGACAGCGTGTGTCATTACAACTTTCTCCCCG
TTTCCATGAGAACACGGATTGGGTGTTGAAGTGCTGGACATGATATCTTG
ATTTAGTTTTTGATTTGTCGGCTGCCGCGCGGGGGCTTTATTCCCACCTT
ACCCCACCTCTCCTCTCTTCCCTCTTCCTCTGGATCTCTTTCGGTTGTGA
ACTCCTTCGCAAAAATCCAGTTCGGGGTGGATCGGACACGGATGGACATG
CGGCGCGACGACTGGATGTCGAACAAGCTCTGCTGCATCTTCAGCTCGTG
CGGCCTCACCAACTGGCAGGAATGCCAGCTTCTCTGCGTCCGCTGCACCT
TCTAGAAGGAGGCGGGACAGCGGGAGCGGCTGGGCGGTGCCGTGGGTGGC
GGGCGGTGGCGGCAGCGACAGGGCTGCGGCGGCAACGGTGGCGAGTCAGC
CGCAGTGGCGGCGATGGACAGGTGGCCGTAATTGCAGCCAGCGCGGCAGC
TGCGCGCCATGCCATACATTTCGAGCCGCAAAGGAAGGTCCTGTCGGCCC
GCCGCCCTTGTCAAGAGGCCTCGGTGGATTCCGGCGGCTGATGCCGCTGG
GGAGAGAACTTGTATCAAAGTTGTGGAAAAGATAGCAAGCCGTTGAGGAA
GTTTTGTATGTAGCGACTCGGGGCGTTCTGTGCCTCAGCACTGGCAGTAA
TGTGCCGGAGCTGAGATGAGAGTGACGGTCGCTTCAGGGGTGGCGTAAAG
TTACAATGCCACCACCGGCCCGCCGAACGACGGGGACATGCAAACACCGC
AGACCCACGATACCAAATGCCAGCAAAGCCAGTTGTGGCAAATTTGACTA
AAAGTGAAAATGATACTGTCCCATTCGTGTAGGCCCCCGCTGAATGGATG
TTCATTATTTTACTTAAGTAGGCGGTCAGAGACTTTGCACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig789:4757..7298-

>mRNA_P-wetherbeei_contig789.6.1 ID=mRNA_P-wetherbeei_contig789.6.1|Name=mRNA_P-wetherbeei_contig789.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig789:4757..7298- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACCGCAACCCTAGCGACGCGCTTGATCGAAGGGCCCCAGTGCAT
CAACCGCGGCACGGAGCAGCTCGAGGTCTTCTCCAGCTTTGGCGACAAGT
TCATCCTCGCCATTAGCGAGGAGCCGACCGTCGAACTCGTCAAGCAGGAA
GCATCCGCCCGCCTCGGACTGTCGCCGCGAGACATCTCCGTGCGACAGGC
CGGCGCCATTCTCCGCGACGGTGCCGTCGTCGACACAGCGACGCCGGTTG
AGCTCTCGTATGAACTGCGCGGCGGCGGCAACGCCGGCTTGACGCTCGAG
ACTTCTTTCCCGGCGCTTTGCCGCTTCGACTTCCTGTGCTGGAAGTGCGG
CGTGGGTAGCTTGCCGGGCGACGTCATGCGCGAAACGTGGTGCGAGAGCC
ACCTCTGCTGCTGCTTTAATCGCTGCGGCCCCAATGACTGCGTCGGGCTT
CAGGTACTGTGCCTGCGCTGCTGGCCCAACCCGTCGGTTGACACCACCAT
GCCGCATTGCCTCACCATCAAGATCCTCTGTGAGGAGTTCGGGGTGGATC
GGACACGGATGGACATGCGGCGCGACGACTGGATGTCGAACAAGCTCTGC
TGCATCTTCAGCTCGTGCGGCCTCACCAACTGGCAGGAATGCCAGCTTCT
CTGCGTCCGCTGCACCTTCTAG
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