mRNA_P-wetherbeei_contig789.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig789.4.1
Unique NamemRNA_P-wetherbeei_contig789.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig789.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig789contigP-wetherbeei_contig789:3156..3343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.8956447-UTR-P-wetherbeei_contig789:3155..31921683187006.8956447-UTR-P-wetherbeei_contig789:3155..3192Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 3156..3192 -
1683187006.9274302-UTR-P-wetherbeei_contig789:3322..33431683187006.9274302-UTR-P-wetherbeei_contig789:3322..3343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 3323..3343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.9073496-CDS-P-wetherbeei_contig789:3192..32351683187006.9073496-CDS-P-wetherbeei_contig789:3192..3235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 3193..3235 -
1683187006.9175992-CDS-P-wetherbeei_contig789:3248..33221683187006.9175992-CDS-P-wetherbeei_contig789:3248..3322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 3249..3322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig789.4.1prot_P-wetherbeei_contig789.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig789 3193..3322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig789.4.1

>prot_P-wetherbeei_contig789.4.1 ID=prot_P-wetherbeei_contig789.4.1|Name=mRNA_P-wetherbeei_contig789.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
MHAFCGFDVLDADGDVIESFGAPRRTLLLRRLHRPSRT*
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mRNA from alignment at P-wetherbeei_contig789:3156..3343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig789.4.1 ID=mRNA_P-wetherbeei_contig789.4.1|Name=mRNA_P-wetherbeei_contig789.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=188bp|location=Sequence derived from alignment at P-wetherbeei_contig789:3156..3343- (Phaeothamnion wetherbeei SAG_119_79)
TGTGACAAATGTGGGTGCCCAATGCATGCGTTTTGTGGCTTCGACGTTCT
CGATGCTGATGGCGATGTCATAGAGAGCTTCGGGGCGCCACGTCGCTGCG
GCGTGTGCAACACTATTGCTCCGACGCCTGCATCGGCCGTCGAGGACATG
ACCGGCGATTCGGACGACGAGGAGGAGGTCTCCACTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig789:3156..3343-

>mRNA_P-wetherbeei_contig789.4.1 ID=mRNA_P-wetherbeei_contig789.4.1|Name=mRNA_P-wetherbeei_contig789.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig789:3156..3343- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATGCGTTTTGTGGCTTCGACGTTCTCGATGCTGATGGCGATGTCAT
AGAGAGCTTCGGGGCGCCACGTCGAACACTATTGCTCCGACGCCTGCATC
GGCCGTCGAGGACATGA
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