mRNA_P-wetherbeei_contig789.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig789.3.1
Unique NamemRNA_P-wetherbeei_contig789.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig789.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig789contigP-wetherbeei_contig789:2275..2619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog45351.EDO49956
PFAMsGAIN,GPS,Gal_Lectin,HRM,Laminin_G_3,Pentaxin
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K08465,ko:K08466
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.56e-05
EggNOG OGsKOG4193@1|root,KOG4193@2759|Eukaryota
DescriptionG-protein coupled receptor activity
Cds size219
COG categoryS
BRITEko00000,ko04030
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.8315613-UTR-P-wetherbeei_contig789:2274..22911683187006.8315613-UTR-P-wetherbeei_contig789:2274..2291Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 2275..2291 -
1683187006.865424-UTR-P-wetherbeei_contig789:2528..26191683187006.865424-UTR-P-wetherbeei_contig789:2528..2619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig789 2529..2619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.843753-CDS-P-wetherbeei_contig789:2291..23641683187006.843753-CDS-P-wetherbeei_contig789:2291..2364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 2292..2364 -
1683187006.8546166-CDS-P-wetherbeei_contig789:2382..25281683187006.8546166-CDS-P-wetherbeei_contig789:2382..2528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig789 2383..2528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig789.3.1prot_P-wetherbeei_contig789.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig789 2292..2528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig789.3.1

>prot_P-wetherbeei_contig789.3.1 ID=prot_P-wetherbeei_contig789.3.1|Name=mRNA_P-wetherbeei_contig789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MLELKKQLVSGSSLTPDTIKLRIRVVQVFAESGTPLHRVPYFRPLFEELD
VSELRRMVPDLLKIEENRLSRS*
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mRNA from alignment at P-wetherbeei_contig789:2275..2619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig789.3.1 ID=mRNA_P-wetherbeei_contig789.3.1|Name=mRNA_P-wetherbeei_contig789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig789:2275..2619- (Phaeothamnion wetherbeei SAG_119_79)
GGTGAAACAACACATCAAGACGGACAAGCACAAGGTGCAAAAGGGCAATC
ATACTCTCAAGGAGGCGGCGAACGAGACGCTGAACAAGCACATGCTGGAG
CTGAAGAAGCAGCTTGTATCCGGCTCGTCCCTGACGCCCGACACCATTAA
GCTGCGGATCCGTGTCGTGCAGGTCTTCGCCGAGTCTGGGACGCCGCTTC
ACCGGGTGCCCTACTTCCGGCCGCTCTTCGAGGAGCTCTCGGGGCTCCGG
CTGACGGACGTCTCCGAGCTGCGCCGCATGGTGCCGGACCTGCTCAAGAT
CGAAGAGAATCGGCTTTCAAGGAGTTGACCGGCAAGAAGGTCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig789:2275..2619-

>mRNA_P-wetherbeei_contig789.3.1 ID=mRNA_P-wetherbeei_contig789.3.1|Name=mRNA_P-wetherbeei_contig789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig789:2275..2619- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGCTGAAGAAGCAGCTTGTATCCGGCTCGTCCCTGACGCCCGA
CACCATTAAGCTGCGGATCCGTGTCGTGCAGGTCTTCGCCGAGTCTGGGA
CGCCGCTTCACCGGGTGCCCTACTTCCGGCCGCTCTTCGAGGAGCTGGAC
GTCTCCGAGCTGCGCCGCATGGTGCCGGACCTGCTCAAGATCGAAGAGAA
TCGGCTTTCAAGGAGTTGA
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