mRNA_P-wetherbeei_contig7887.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7887.2.1
Unique NamemRNA_P-wetherbeei_contig7887.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI0006943B7A (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Imhoffiella purpurea TaxID=1249627 RepID=UPI0006943B7A)

HSP 1 Score: 83.2 bits (204), Expect = 2.850e-18
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
            FR +D   P Q +  FLF+A+  +E   ++ +    G VSSSTSRN+A LSK+HRL KPGLDL+E   DP D RYK V L  KG      L+
Sbjct:   24 FRTIDPDMPVQQIATFLFVAT--REGSSVKAISAGTGQVSSSTSRNIAALSKYHRLNKPGLDLIEAREDPADRRYKTVHLTPKGHMFAENLI 113          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI001032FB1B (MarR family winged helix-turn-helix transcriptional regulator n=2 Tax=Pseudomonas TaxID=286 RepID=UPI001032FB1B)

HSP 1 Score: 76.6 bits (187), Expect = 6.610e-16
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLI 318
            L  +   L  FRD D     QT Q F  IA A +  I M++L +++G+  +S SRNVA LS+ HRL K G+DLV    DP + R K VKL AKG++L   L  LI
Sbjct:    6 LNVIEEVLKRFRDFDQEMQMQTAQTF--IAVALQPGITMKELSERVGISQASCSRNVAALSRVHRLNKAGMDLVVAAEDPMERRRKVVKLTAKGQRLAEALTKLI 108          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A435WT42_9HYPH (MarR family transcriptional regulator n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A435WT42_9HYPH)

HSP 1 Score: 76.3 bits (186), Expect = 1.090e-15
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    1 TLKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
            T + +   +  F  +D     Q +  FL +    K D+ MR+L+   G+ SSS SRNV+ LSK HR G+PG DLV TY D  D R KRVK   KG ++   L++++G
Sbjct:   13 TARRLLSFIEEFGKLDAEMQIQQIAVFLHVMG--KPDLTMRELETATGLSSSSVSRNVSALSKTHRKGQPGHDLVTTYEDAMDRRIKRVKPTPKGTKVFNTLISILG 117          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI00110DB7CD (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Ruegeria sediminis TaxID=2583820 RepID=UPI00110DB7CD)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-15
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 TLKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
            + +S+    +  RD+D   P Q  Q  +F+ +A  E     DL+  + M+SS+ SRN+A LSK HRLGKPGL+L+E   +P D R K + L  KG+QL ++L+
Sbjct:   14 SFRSIFAVCSKLRDIDENMPLQ--QALVFLWAALNEGKTQVDLRRDLDMLSSTASRNLAALSKVHRLGKPGLNLIEWVENPEDRRAKLIYLTVKGRQLASKLL 114          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI001AE14A04 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Ruegeria sp. HKCCSP346 TaxID=2794830 RepID=UPI001AE14A04)

HSP 1 Score: 75.9 bits (185), Expect = 2.660e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLI 318
            FR++D+  P Q + C +++A+   E    ++L+D +GM SS+ SRN+  L+ +HRLGKPGL LVE   D  D R K V+L  KG+ L   ++N +
Sbjct:   24 FREVDSEMPVQQMLCLVWVAN--NEGKSQKELRDSLGMASSTASRNLNALADYHRLGKPGLGLVEMADDFRDRRQKVVRLTPKGRTLMNEVLNYV 116          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A502T8E3_9HYPH (MarR family transcriptional regulator n=2 Tax=Mesorhizobium TaxID=68287 RepID=A0A502T8E3_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 3.670e-15
Identity = 46/103 (44.66%), Postives = 58/103 (56.31%), Query Frame = 1
Query:   13 MAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
            M   L  F  +D     Q +  FL I   +K D+ MR+L+   G+ SSS SRNV+ LSK HR G+PG DLV TY D  D R KRVK   KG ++   L  +IG
Sbjct:   10 MLGLLDEFAKLDPEMQIQQISVFLRIV--EKPDLSMRELEQLTGLSSSSVSRNVSALSKVHRKGQPGHDLVATYEDTQDRRIKRVKPTPKGMKVFNTLNMVIG 110          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A1J4QCJ4_9GAMM (Uncharacterized protein n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QCJ4_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 5.890e-15
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNL 315
            L+ +A ++   R+  +    Q    FL IA   +  I  +++  + G   SS SRN+A LSK HRLGKPGLDLV    DP + R K ++L +KGK+L ARL ++
Sbjct:   13 LRRLAQSIGEIREASSDLTLQAAHMFLLIAV--QPGITSKEIIRETGFSQSSCSRNLAMLSKIHRLGKPGLDLVTAEEDPAERRRKALRLTSKGKELAARLADI 114          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI000691998B (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Methylobacterium sp. ZNC0032 TaxID=1339244 RepID=UPI000691998B)

HSP 1 Score: 74.3 bits (181), Expect = 9.870e-15
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
            + ++   L V RD +   P QT Q  L +A   +  + M+D+    G+  SS SRN+  L K HRLGKPG+DLVE   DP+D R K V L   G++L  +L+
Sbjct:    7 IAALIKVLQVLRDKEAEFPIQTAQTLLCVAL--QPGMTMQDIAKATGLSQSSASRNIQSLGKWHRLGKPGMDLVEAVEDPHDTRRKIVFLTKDGRELVGKLL 106          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A2G8RD03_9RHOB (Uncharacterized protein n=1 Tax=Puniceibacterium antarcticum TaxID=1206336 RepID=A0A2G8RD03_9RHOB)

HSP 1 Score: 71.2 bits (173), Expect = 9.230e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
            FR+ D   P Q  Q  +F   A  E    RD++D +G+ SS++SRN+A LS  HRLGKPGL L+E      D R K ++L+ KG+ L  RL+
Sbjct:   23 FREQDPDAPIQ--QALIFCWVALNEGRSQRDMRDALGIASSTSSRNLAALSSVHRLGKPGLGLIEWIESGEDRRVKMLQLSQKGRTLVHRLL 112          
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A0L6CQL8_9RHOB (Uncharacterized protein n=1 Tax=Roseovarius tolerans TaxID=74031 RepID=A0A0L6CQL8_9RHOB)

HSP 1 Score: 70.9 bits (172), Expect = 1.340e-13
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    7 KSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
            +++   +   R++D   P     CF +IA    E     +L+  + M SS++SRN+A LSK HRLGKPGLD++E   +P D R K + L+ +GK L ++++   G
Sbjct:   14 RAIFQVMQALRELDADMPMNQAVCFAWIAL--NEGRTQVELRQDLDMASSTSSRNLAALSKVHRLGKPGLDMIEWVENPKDRRAKLLYLSNEGKHLVSKMLARFG 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0006943B7A2.850e-1847.83MarR family winged helix-turn-helix transcriptiona... [more]
UPI001032FB1B6.610e-1644.76MarR family winged helix-turn-helix transcriptiona... [more]
A0A435WT42_9HYPH1.090e-1540.19MarR family transcriptional regulator n=3 Tax=uncl... [more]
UPI00110DB7CD2.190e-1540.78MarR family winged helix-turn-helix transcriptiona... [more]
UPI001AE14A042.660e-1541.05MarR family winged helix-turn-helix transcriptiona... [more]
A0A502T8E3_9HYPH3.670e-1544.66MarR family transcriptional regulator n=2 Tax=Meso... [more]
A0A1J4QCJ4_9GAMM5.890e-1540.38Uncharacterized protein n=1 Tax=Oceanisphaera psyc... [more]
UPI000691998B9.870e-1540.20MarR family winged helix-turn-helix transcriptiona... [more]
A0A2G8RD03_9RHOB9.230e-1443.48Uncharacterized protein n=1 Tax=Puniceibacterium a... [more]
A0A0L6CQL8_9RHOB1.340e-1336.19Uncharacterized protein n=1 Tax=Roseovarius tolera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7887contigP-wetherbeei_contig7887:1986..2309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_3072
PFAMsHTH_27
Model size324
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-17
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1N9BM@1224|Proteobacteria,2UIS3@28211|Alphaproteobacteria,2JX7P@204441|Rhodospirillales
DescriptionWinged helix DNA-binding domain
Cds size312
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.6792338-UTR-P-wetherbeei_contig7887:1985..19971683187006.6792338-UTR-P-wetherbeei_contig7887:1985..1997Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7887 1986..1997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.6890244-CDS-P-wetherbeei_contig7887:1997..23091683187006.6890244-CDS-P-wetherbeei_contig7887:1997..2309Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7887 1998..2309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7887.2.1prot_P-wetherbeei_contig7887.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7887 1998..2309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7887.2.1

>prot_P-wetherbeei_contig7887.2.1 ID=prot_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSST
SRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVN
LIG*
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mRNA from alignment at P-wetherbeei_contig7887:1986..2309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7887.2.1 ID=mRNA_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:1986..2309+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCTCAAGAGCATGGCCCACGCCCTAGCAGTGTTCCGCGACATGGACAC TCTGTGCCCGGCCCAGACGGTTCAATGCTTCCTCTTCATCGCGTCCGCGC AGAAAGAGGACATCCACATGCGGGACCTTCAGGACCAAATGGGAATGGTC TCTTCGTCAACTTCGCGAAACGTCGCCTATCTATCAAAGCACCACCGGCT CGGTAAGCCGGGCCTCGATCTGGTCGAGACCTACTACGACCCGAACGATG GCCGCTACAAGCGCGTCAAGCTGAACGCTAAGGGCAAGCAGTTGAAGGCC CGCCTCGTCAACCTAATCGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7887:1986..2309+

>mRNA_P-wetherbeei_contig7887.2.1 ID=mRNA_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:1986..2309+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCACGCCCTAGCAGTGTTCCGCGACATGGACACTCTGTGCCCGGC
CCAGACGGTTCAATGCTTCCTCTTCATCGCGTCCGCGCAGAAAGAGGACA
TCCACATGCGGGACCTTCAGGACCAAATGGGAATGGTCTCTTCGTCAACT
TCGCGAAACGTCGCCTATCTATCAAAGCACCACCGGCTCGGTAAGCCGGG
CCTCGATCTGGTCGAGACCTACTACGACCCGAACGATGGCCGCTACAAGC
GCGTCAAGCTGAACGCTAAGGGCAAGCAGTTGAAGGCCCGCCTCGTCAAC
CTAATCGGGTGA
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