mRNA_P-wetherbeei_contig7877.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7877.2.1
Unique NamemRNA_P-wetherbeei_contig7877.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A7S0H280_9EUKA (Uroporphyrinogen decarboxylase n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H280_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 7.500e-22
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEAL 231
            QGNFDP  L +GTEESV AAVGEML+ELGPQRLIANLGEGL GKE P+LV  FVDA+H  SE +
Sbjct:  409 QGNFDPKLLQEGTEESVKAAVGEMLQELGPQRLIANLGEGLSGKEDPKLVKAFVDAIHATSEEM 472          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A1L3A3Z5_9EUGL (Plastid uroporphyrinogen decarboxylase isoform 1 (Fragment) n=1 Tax=Trachelomonas ellipsoidalis TaxID=253960 RepID=A0A1L3A3Z5_9EUGL)

HSP 1 Score: 88.2 bits (217), Expect = 6.220e-20
Identity = 51/78 (65.38%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 AATGSAAVAPAACQGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            A  GS A   A  QGN D A L  GTE  V  A  +MLRELGPQ LIANLGEGL GKE PRLV  FVDAVHELSE +I
Sbjct:  128 AVNGSPAGHVAGVQGNLDVALLQSGTELQVREATAQMLRELGPQGLIANLGEGLMGKEDPRLVTAFVDAVHELSEEMI 205          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A7S1VAW3_9STRA (Uroporphyrinogen decarboxylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VAW3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.610e-19
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            QGN+DP HLV+GT ESV     EML+ELG QRLIANLGEGLGGKE+  LV  FVDAVH  SE++I
Sbjct:  365 QGNYDPKHLVEGTPESVTETAREMLQELGCQRLIANLGEGLGGKEKTELVKAFVDAVHSESESII 429          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A1L3A408_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Trachelomonas volvocina TaxID=103340 RepID=A0A1L3A408_9EUGL)

HSP 1 Score: 89.4 bits (220), Expect = 2.680e-19
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            QGNFD   L DGTEE V  AV +ML++LGPQ LIANLGEGL GKE PRLV  FVDAVHE+SE +I
Sbjct:  317 QGNFDVKLLQDGTEEQVREAVAKMLQDLGPQGLIANLGEGLMGKEDPRLVTTFVDAVHEISEQMI 381          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A1L3A3Y2_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Euglena clara TaxID=215708 RepID=A0A1L3A3Y2_9EUGL)

HSP 1 Score: 87.8 bits (216), Expect = 1.000e-18
Identity = 48/77 (62.34%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 ATGSAAVAPAACQGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            A GS +   A  QGN D A L  GTE+ +  A  ++L ELGPQ LIANLGEGL GKE P LVACFVDAVHELSE +I
Sbjct:  305 ANGSPSGHVAGVQGNLDVALLQTGTEQEIQEATAQLLGELGPQGLIANLGEGLMGKEDPALVACFVDAVHELSEEMI 381          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A1L3A3Z9_9EUGL (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Monomorphina parapyrum TaxID=1664066 RepID=A0A1L3A3Z9_9EUGL)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            QGN D A L  GTEE V AAV ++L ELGPQ LIANLGEGL G+E PRLVA FVD VHELS+A+I
Sbjct:  317 QGNLDVALLQTGTEEQVRAAVQQLLEELGPQGLIANLGEGLMGQEDPRLVAIFVDTVHELSDAMI 381          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A7S0BVX0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVX0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.470e-18
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   40 QGNFDPAHLV----DGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            QGN+DP  L+    D T E+V A+  EML  LGPQRLIANLGEGLGGKE P LVA FVDA+HE SE LI
Sbjct:  367 QGNYDPRFLIADGTDNTPETVRASAKEMLESLGPQRLIANLGEGLGGKESPDLVASFVDAIHEESEKLI 435          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A7S3AQJ1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AQJ1_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 4.520e-18
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVH 213
            QG+FDPA L+DGTEESV  AV  ML +LGPQ LIANL EGL GKE P+LV  FVDAVH
Sbjct:  191 QGDFDPALLIDGTEESVRDAVNSMLTDLGPQNLIANLCEGLSGKEDPKLVTAFVDAVH 248          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A7S2TH76_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TH76_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 4.810e-18
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   40 QGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEAL 231
            QGNFDP  L +GT E+V + V +ML++LG Q LIANLGEGL GKE P LV  FVDAVHE SE +
Sbjct:  108 QGNFDPKFLQEGTPETVRSEVQQMLQDLGQQNLIANLGEGLSGKEDPALVKAFVDAVHEFSEQM 171          
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Match: A0A1L3A3Z7_EUGST (Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=Euglena stellata TaxID=38278 RepID=A0A1L3A3Z7_EUGST)

HSP 1 Score: 85.5 bits (210), Expect = 5.670e-18
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 ATGSAAVAPAACQGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANLGEGLGGKEQPRLVACFVDAVHELSEALI 234
            A GS +   A  QGN D   L DGTE+ V  A  ++L ELGPQ LIANLGEGL GKE P+LVA FVDAVHE+SE +I
Sbjct:  278 ANGSPSGHMAGVQGNLDVVLLQDGTEQQVKDATAKLLEELGPQGLIANLGEGLMGKEDPKLVATFVDAVHEISEKMI 354          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7877.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0H280_9EUKA7.500e-2275.00Uroporphyrinogen decarboxylase n=2 Tax=Amorphochlo... [more]
A0A1L3A3Z5_9EUGL6.220e-2065.38Plastid uroporphyrinogen decarboxylase isoform 1 (... [more]
A0A7S1VAW3_9STRA2.610e-1969.23Uroporphyrinogen decarboxylase n=1 Tax=Grammatopho... [more]
A0A1L3A408_9EUGL2.680e-1970.77Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Y2_9EUGL1.000e-1862.34Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A1L3A3Z9_9EUGL1.350e-1870.77Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]
A0A7S0BVX0_9STRA3.470e-1866.67Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3AQJ1_9EUKA4.520e-1872.41Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2TH76_9EUKA4.810e-1864.06Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1L3A3Z7_EUGST5.670e-1861.04Uroporphyrinogen decarboxylase (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7877contigP-wetherbeei_contig7877:2713..2946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD26455
Preferred nameHEME4
PFAMsCoprogen_oxidas,Porphobil_deam,Porphobil_deamC,URO-D
Model size234
Max annot lvl2759|Eukaryota
KEGG rclassRC00872
KEGG koko:K01599
KEGG ReactionR03197,R04972
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-18
EggNOG OGsCOG0407@1|root,KOG2872@2759|Eukaryota
Ec32 ortholog descriptionUroporphyrinogen decarboxylase, chloroplast precursor
Ec32 orthologEc-24_000650.1
EC4.1.1.37
Descriptionuroporphyrinogen decarboxylase activity
Cds size234
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.1039562-CDS-P-wetherbeei_contig7877:2712..29461683187006.1039562-CDS-P-wetherbeei_contig7877:2712..2946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7877 2713..2946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7877.2.1prot_P-wetherbeei_contig7877.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7877 2713..2946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7877.2.1

>prot_P-wetherbeei_contig7877.2.1 ID=prot_P-wetherbeei_contig7877.2.1|Name=mRNA_P-wetherbeei_contig7877.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
AATGSAAVAPAACQGNFDPAHLVDGTEESVWAAVGEMLRELGPQRLIANL
GEGLGGKEQPRLVACFVDAVHELSEALI
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mRNA from alignment at P-wetherbeei_contig7877:2713..2946-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7877.2.1 ID=mRNA_P-wetherbeei_contig7877.2.1|Name=mRNA_P-wetherbeei_contig7877.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig7877:2713..2946- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCACTGGCAGTGCGGCGGTGGCACCGGCGGCGTGCCAGGGCAACTT TGACCCGGCGCACTTGGTGGACGGTACGGAGGAGTCCGTGTGGGCGGCCG TCGGGGAGATGCTGCGGGAGCTGGGGCCGCAGCGGCTGATCGCCAACTTG GGGGAGGGGCTGGGCGGAAAGGAGCAGCCGCGTCTGGTGGCGTGCTTCGT GGATGCCGTGCACGAGCTGTCGGAGGCGCTCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7877:2713..2946-

>mRNA_P-wetherbeei_contig7877.2.1 ID=mRNA_P-wetherbeei_contig7877.2.1|Name=mRNA_P-wetherbeei_contig7877.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig7877:2713..2946- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCACTGGCAGTGCGGCGGTGGCACCGGCGGCGTGCCAGGGCAACTT
TGACCCGGCGCACTTGGTGGACGGTACGGAGGAGTCCGTGTGGGCGGCCG
TCGGGGAGATGCTGCGGGAGCTGGGGCCGCAGCGGCTGATCGCCAACTTG
GGGGAGGGGCTGGGCGGAAAGGAGCAGCCGCGTCTGGTGGCGTGCTTCGT
GGATGCCGTGCACGAGCTGTCGGAGGCGCTCATC
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