mRNA_P-wetherbeei_contig7869.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7869.2.1
Unique NamemRNA_P-wetherbeei_contig7869.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A662XUK0_9STRA (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUK0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.600e-16
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   13 QHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            QHEKGKLTARER+ LL+D G+FREYDMLKTHRC+DFGM
Sbjct:   44 QHEKGKLTARERIELLVDQGTFREYDMLKTHRCSDFGM 81          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A2P4XJF7_9STRA (Propionyl-CoA carboxylase beta chain, mitochondrial (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJF7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.000e-15
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   10 SQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            +QH KGKLTARER+ LLLD G+FREYDMLK+HRC+DFGM
Sbjct:   43 NQHAKGKLTARERIELLLDKGTFREYDMLKSHRCSDFGM 81          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A5D6XSM9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSM9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.710e-14
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   13 QHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            QHEKGKLTARER+ LLLD GSFREYDMLK+HRC DFGM
Sbjct:  102 QHEKGKLTARERIELLLDQGSFREYDMLKSHRCADFGM 139          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.720e-14
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   13 QHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            QH +GKL+ARER+ +LLDPGSFREYDMLKTHRCTDFGM
Sbjct:   55 QHSRGKLSARERLDVLLDPGSFREYDMLKTHRCTDFGM 92          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A7S3HLN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLN0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.370e-14
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   10 SQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            +QH++GKLTARER++LLLD GSFREYDMLKTHRC +FGM
Sbjct:   61 TQHQRGKLTARERLSLLLDDGSFREYDMLKTHRCDEFGM 99          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A0F8Y6F6_9ZZZZ (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8Y6F6_9ZZZZ)

HSP 1 Score: 68.2 bits (165), Expect = 4.740e-14
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 SQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            +QH KGKLTARERV LLLD GSF E+DM  THRCTDFGM
Sbjct:   26 AQHAKGKLTARERVELLLDEGSFEEFDMFVTHRCTDFGM 64          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A1H3K3M3_9RHOB (Propionyl-CoA carboxylase carboxyltransferase subunit n=1 Tax=Lentibacter algarum TaxID=576131 RepID=A0A1H3K3M3_9RHOB)

HSP 1 Score: 73.2 bits (178), Expect = 5.080e-14
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    4 NPSQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            N +QH KGKLTARERV LLLD GSF E+DM KTHRCTDFGM
Sbjct:   24 NAAQHSKGKLTARERVELLLDEGSFEEFDMFKTHRCTDFGM 64          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: M4C3M6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3M6_HYAAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.090e-14
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   13 QHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            QHEKGKLTARER+ LL+D GSFREYDMLK+HRC+DFGM
Sbjct:   29 QHEKGKLTARERIELLVDEGSFREYDMLKSHRCSDFGM 66          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A482RW21_9ARCH (CoA carboxyltransferase N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW21_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 5.560e-14
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 1
Query:   10 SQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            +QH+KGKLTARER++LLLD GSFREYD  KTHRCT+FG+
Sbjct:   54 AQHKKGKLTARERLSLLLDEGSFREYDTFKTHRCTEFGL 92          
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Match: A0A485L1X9_9STRA (Aste57867_14928 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485L1X9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.950e-14
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   10 SQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM 126
            +QH KGKLTARER+ LLLD GSFREYDMLKTHRC DFGM
Sbjct:   46 AQHNKGKLTARERLELLLDEGSFREYDMLKTHRCKDFGM 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7869.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662XUK0_9STRA8.600e-1684.21CoA carboxyltransferase N-terminal domain-containi... [more]
A0A2P4XJF7_9STRA4.000e-1579.49Propionyl-CoA carboxylase beta chain, mitochondria... [more]
A0A5D6XSM9_9STRA2.710e-1486.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6H5KY11_9PHAE3.720e-1484.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HLN0_9STRA4.370e-1479.49Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0F8Y6F6_9ZZZZ4.740e-1479.49CoA carboxyltransferase N-terminal domain-containi... [more]
A0A1H3K3M3_9RHOB5.080e-1480.49Propionyl-CoA carboxylase carboxyltransferase subu... [more]
M4C3M6_HYAAE5.090e-1484.21Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A482RW21_9ARCH5.560e-1476.92CoA carboxyltransferase N-terminal domain-containi... [more]
A0A485L1X9_9STRA6.950e-1484.62Aste57867_14928 protein n=5 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7869contigP-wetherbeei_contig7869:2353..2478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000014523
PFAMsCarboxyl_trans
Model size126
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.75e-15
EggNOG OGsCOG4799@1|root,KOG0540@2759|Eukaryota,1MCI4@121069|Pythiales
DescriptionPropionyl-CoA carboxylase beta chain, mitochondrial. Source PGD
Cds size126
COG categoryEI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.733157-CDS-P-wetherbeei_contig7869:2352..24781683187005.733157-CDS-P-wetherbeei_contig7869:2352..2478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7869 2353..2478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7869.2.1prot_P-wetherbeei_contig7869.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7869 2353..2478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7869.2.1

>prot_P-wetherbeei_contig7869.2.1 ID=prot_P-wetherbeei_contig7869.2.1|Name=mRNA_P-wetherbeei_contig7869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
ANPSQHEKGKLTARERVALLLDPGSFREYDMLKTHRCTDFGM
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mRNA from alignment at P-wetherbeei_contig7869:2353..2478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7869.2.1 ID=mRNA_P-wetherbeei_contig7869.2.1|Name=mRNA_P-wetherbeei_contig7869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig7869:2353..2478+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAATCCTTCGCAGCACGAAAAGGGCAAGCTGACTGCGCGGGAGCGCGT GGCGCTGCTGCTGGACCCTGGGTCGTTCCGGGAATATGACATGCTGAAGA CGCACCGCTGCACCGACTTCGGCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7869:2353..2478+

>mRNA_P-wetherbeei_contig7869.2.1 ID=mRNA_P-wetherbeei_contig7869.2.1|Name=mRNA_P-wetherbeei_contig7869.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig7869:2353..2478+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAATCCTTCGCAGCACGAAAAGGGCAAGCTGACTGCGCGGGAGCGCGT
GGCGCTGCTGCTGGACCCTGGGTCGTTCCGGGAATATGACATGCTGAAGA
CGCACCGCTGCACCGACTTCGGCATG
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