mRNA_P-wetherbeei_contig786.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig786.5.1
Unique NamemRNA_P-wetherbeei_contig786.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A7S2SIY3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIY3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.770e-22
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  126 VFLPRRVIGAARDQEIAERACNCKRSNCLKLYCECFANGMICQ-PRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKI 365
            V +P R IGA+ DQ    R CNC+RSNCLKLYCECFA+G+ CQ  +C C +CYNN   E  R +A+E TLE+N  AFRPKI
Sbjct:   14 VEIPARTIGASSDQVSRRRQCNCRRSNCLKLYCECFASGIYCQLDQCHCVNCYNNFENEATRRSAIEGTLERNINAFRPKI 94          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A7S1U610_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U610_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.340e-21
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  132 LPRRVIGAARDQEIAERA---CNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIV 368
            +P  V+G   D E A  A   CNCKRSNCLKLYCECFA G+ C+  C C SC+NN + E LR  AVE  L++N +AFRPKI+
Sbjct:    1 MPLAVVGY--DDEAARPAPKQCNCKRSNCLKLYCECFAAGIYCRSDCNCVSCFNNISYENLRMEAVEAILDRNAMAFRPKIL 80          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A7R9UF38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF38_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.970e-20
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  132 LPRRVIGAARDQEIAERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIV 368
            +P  ++G    Q    + CNCKRSNCLKLYCECFA G+ C+  C C SC+NN + E LR  AV+  L++NP+AFRPKI+
Sbjct:    1 MPLTMVGFEEAQRPTPKQCNCKRSNCLKLYCECFAAGIYCRSDCNCVSCFNNISYENLRMEAVDAILDRNPMAFRPKIL 79          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A7S4MT92_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MT92_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.070e-20
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  126 VFLPRRVIGAARDQEIAERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGE---KLRATAVEQTLEKNPVAFRPKIVA 371
            V LP R+IG  RDQ    + CNCKRS+CLKLYCECFA+ + C P C C  C NN   +   KLR  A+  TLE+NP AFRP+ +A
Sbjct:  371 VPLPPRIIGGLRDQIERTKQCNCKRSHCLKLYCECFASSINCAPSCNCVDCANNGDSDEHVKLRTEAIRTTLERNPHAFRPRALA 455          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A7R9TM53_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TM53_9VIRI)

HSP 1 Score: 92.4 bits (228), Expect = 2.180e-19
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  132 LPRRVIGAARDQEIA---ERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIVA 371
            L RR  G  R+ E     ++ CNCK S CLKLYCECFA+G+ C   C C +C+NN A E +R  AVEQTLE+NP AFRPKI A
Sbjct:  115 LIRRYSGRGREPEDGTPRKKVCNCKNSRCLKLYCECFASGVYCNG-CNCTNCFNNSANEAVRREAVEQTLERNPNAFRPKIEA 196          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A9VAQ1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAQ1_MONBE)

HSP 1 Score: 89.4 bits (220), Expect = 1.950e-18
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  180 RACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIVA 371
            R CNCK S CLKLYCECFANG  C P C C SC N  A E LR  A+E TL KNP AFRPK  A
Sbjct:  216 RTCNCKNSKCLKLYCECFANGEYCGPNCNCVSCGNREATETLRKQAIEVTLAKNPDAFRPKFGA 279          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: UPI001FB10B86 (protein tesmin/TSO1-like CXC 5 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB10B86)

HSP 1 Score: 87.4 bits (215), Expect = 3.590e-18
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  171 IAERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIV 368
            I +R CNCK S CLKLYCECFA+G  C+  C C +C+NN A E  R  AV+ TLE+NP AFRPKIV
Sbjct:   88 IKQRQCNCKHSKCLKLYCECFASGNNCED-CNCANCHNNTAHESARREAVQATLERNPNAFRPKIV 152          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A4SAJ7_OSTLU (CRC domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4SAJ7_OSTLU)

HSP 1 Score: 83.6 bits (205), Expect = 5.800e-18
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  159 RDQEIAERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIV 368
            RD     + CNCK S CLKLYCECFA+G  C   C C  C NN      R +A+EQTLE+NP AFRPKI+
Sbjct:   24 RDSASQRKRCNCKNSKCLKLYCECFASGKYCDA-CNCAGCKNNDEHAHERQSAIEQTLERNPNAFRPKII 92          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: T0S4Y3_SAPDV (CRC domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S4Y3_SAPDV)

HSP 1 Score: 87.4 bits (215), Expect = 1.290e-17
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  186 CNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKI 365
            CNCK+S CLKLYCECFA+G  C   C+C  C N PA E LR  A+  TLE+NP AFRPKI
Sbjct:  353 CNCKKSKCLKLYCECFASGGFCDESCKCVGCANTPASEPLRTEAITLTLERNPNAFRPKI 412          
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Match: A0A183X6J3_TRIRE (CRC domain-containing protein n=1 Tax=Trichobilharzia regenti TaxID=157069 RepID=A0A183X6J3_TRIRE)

HSP 1 Score: 83.6 bits (205), Expect = 1.580e-17
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  150 GAARDQEIAERACNCKRSNCLKLYCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKI 365
            GA      + + CNC +S+CLKLYCECFA G +CQ  C C +C NN A E+ R  A++ TLE+NP AF PKI
Sbjct:   33 GALSSLANSRKPCNCTKSHCLKLYCECFAQGQLCQ-NCNCHNCMNNLAYEEERGRAIKMTLERNPTAFHPKI 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig786.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SIY3_9STRA3.770e-2259.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U610_9STRA9.340e-2156.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UF38_9STRA1.970e-2053.16Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4MT92_9STRA5.070e-2054.12Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9TM53_9VIRI2.180e-1956.63Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A9VAQ1_MONBE1.950e-1865.63Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
UPI001FB10B863.590e-1862.12protein tesmin/TSO1-like CXC 5 n=1 Tax=Impatiens g... [more]
A4SAJ7_OSTLU5.800e-1855.71CRC domain-containing protein (Fragment) n=1 Tax=O... [more]
T0S4Y3_SAPDV1.290e-1763.33CRC domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A183X6J3_TRIRE1.580e-1752.78CRC domain-containing protein n=1 Tax=Trichobilhar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig786contigP-wetherbeei_contig786:7764..8446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog192875.XP_004345399.1
Preferred nameLIN54
PFAMsTCR
Model size373
Max annot lvl33154|Opisthokonta
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000785,GO:0000793,GO:0000794,GO:0000976,GO:0000977,GO:0001012,GO:0001067,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0006139,GO:0006259,GO:0006277,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010927,GO:0016043,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030317,GO:0030703,GO:0030707,GO:0030849,GO:0030855,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031523,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051674,GO:0051704,GO:0051726,GO:0060255,GO:0060429,GO:0065007,GO:0070013,GO:0070176,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090568,GO:0090571,GO:0097159,GO:0097722,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue2.65e-20
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota,38F3J@33154|Opisthokonta
DescriptionDNA binding
Cds size303
COG categoryP
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.2950895-UTR-P-wetherbeei_contig786:7763..78311683187005.2950895-UTR-P-wetherbeei_contig786:7763..7831Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig786 7764..7831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.3088126-CDS-P-wetherbeei_contig786:7831..78461683187005.3088126-CDS-P-wetherbeei_contig786:7831..7846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig786 7832..7846 +
1683187005.3173428-CDS-P-wetherbeei_contig786:7943..81501683187005.3173428-CDS-P-wetherbeei_contig786:7943..8150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig786 7944..8150 +
1683187005.325894-CDS-P-wetherbeei_contig786:8365..84461683187005.325894-CDS-P-wetherbeei_contig786:8365..8446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig786 8366..8446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig786.5.1prot_P-wetherbeei_contig786.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig786 7832..8446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig786.5.1

>prot_P-wetherbeei_contig786.5.1 ID=prot_P-wetherbeei_contig786.5.1|Name=mRNA_P-wetherbeei_contig786.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MASDEAMTDREPPDQRVINVFLPRRVIGAARDQEIAERACNCKRSNCLKL
YCECFANGMICQPRCRCQSCYNNPAGEKLRATAVEQTLEKNPVAFRPKIV
A
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mRNA from alignment at P-wetherbeei_contig786:7764..8446+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig786.5.1 ID=mRNA_P-wetherbeei_contig786.5.1|Name=mRNA_P-wetherbeei_contig786.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=683bp|location=Sequence derived from alignment at P-wetherbeei_contig786:7764..8446+ (Phaeothamnion wetherbeei SAG_119_79)
GGATAGAGCTCCTGTGACCTGCACGACCGATCTCTTGTTTATGCTTCTCG AGCTCTCGTGGTTGCGCCATGGCGAGCGACGAGGCAAGTTAACCTTTTCT GCGGAAATGTTTGCTACAAATCCCCAAACGCTCACATTCAAATTGTGGTG CTTTTCCGTATATCCTTTTTGGCCCTGCAGGCGATGACGGATCGGGAGCC TCCGGACCAGCGCGTGATTAACGTTTTCCTCCCGCGACGAGTGATTGGGG CTGCGCGCGATCAAGAAATCGCAGAGAGGGCTTGCAATTGCAAGCGAAGC AACTGTCTGAAGCTCTACTGCGAATGTTTCGCCAATGGTATGATCTGCCA GCCGCGCTGCCGCTGCCAGAGCTGCTACAATAACCCAGTAAGTTTCGATG AGGTTACTCTTTTTCACTTTTTCTTTTTTCATGCAGTCCTGAGCGCTGGA GCAAGGTTTGAATATGAGCGGGGCGGCCCTCTTTACAAGGCGTTCTTAGC ATGCTGTCCCTTCCTCCTAATGGTAAATTTTGAGTTTACGGGGGCCGCGC CGATTTCCTTGTCATCAACCTCTCCTTCCCTTTTCCTCGGGGTGGCTCGC AGGCCGGCGAAAAGCTGCGCGCCACCGCGGTGGAACAAACCCTGGAGAAG AACCCCGTGGCCTTCCGGCCGAAAATCGTCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig786:7764..8446+

>mRNA_P-wetherbeei_contig786.5.1 ID=mRNA_P-wetherbeei_contig786.5.1|Name=mRNA_P-wetherbeei_contig786.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig786:7764..8446+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAGCGACGAGGCGATGACGGATCGGGAGCCTCCGGACCAGCGCGT
GATTAACGTTTTCCTCCCGCGACGAGTGATTGGGGCTGCGCGCGATCAAG
AAATCGCAGAGAGGGCTTGCAATTGCAAGCGAAGCAACTGTCTGAAGCTC
TACTGCGAATGTTTCGCCAATGGTATGATCTGCCAGCCGCGCTGCCGCTG
CCAGAGCTGCTACAATAACCCAGCCGGCGAAAAGCTGCGCGCCACCGCGG
TGGAACAAACCCTGGAGAAGAACCCCGTGGCCTTCCGGCCGAAAATCGTC
GCG
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