mRNA_P-wetherbeei_contig7857.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7857.2.1
Unique NamemRNA_P-wetherbeei_contig7857.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7857.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7857contigP-wetherbeei_contig7857:1695..2537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size455
Hectar predicted targeting categorysignal peptide
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.0097861-CDS-P-wetherbeei_contig7857:1694..17631683187005.0097861-CDS-P-wetherbeei_contig7857:1694..1763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7857 1695..1763 -
1683187005.0208812-CDS-P-wetherbeei_contig7857:2151..25231683187005.0208812-CDS-P-wetherbeei_contig7857:2151..2523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7857 2152..2523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.0309134-UTR-P-wetherbeei_contig7857:2523..25371683187005.0309134-UTR-P-wetherbeei_contig7857:2523..2537Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7857 2524..2537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7857.2.1prot_P-wetherbeei_contig7857.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7857 1695..2523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7857.2.1

>prot_P-wetherbeei_contig7857.2.1 ID=prot_P-wetherbeei_contig7857.2.1|Name=mRNA_P-wetherbeei_contig7857.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MVPPSLLLTCAIGLFVLGIIFGRSRWPFDDVGVTLEAGGGVTMLRSSGHG
TGSFRLEASSRIDWSAPGKDDSRESVPMGGNGISLGAPSQRRKTYFVVES
YGLVTDAVAEVFTRYAQQLTGVAEVWVNYDTTCRKVVPGESYKKHM*
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mRNA from alignment at P-wetherbeei_contig7857:1695..2537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7857.2.1 ID=mRNA_P-wetherbeei_contig7857.2.1|Name=mRNA_P-wetherbeei_contig7857.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig7857:1695..2537- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCATGAAAGGATGGTTCCTCCCAGTCTTCTCCTCACATGCGCGATT
GGCCTCTTCGTCCTTGGTATCATCTTCGGTCGTAGCCGCTGGCCGTTTGA
CGACGTCGGCGTAACGCTGGAGGCTGGAGGTGGTGTCACGATGCTTCGGA
GCAGCGGCCACGGCACCGGCAGTTTCCGCCTCGAAGCGTCGAGTCGAATC
GACTGGAGCGCTCCGGGAAAGGATGACAGCAGAGAAAGTGTCCCAATGGG
AGGAAACGGCATTTCCTTGGGAGCGCCTTCGCAACGACGAAAGACTTATT
TCGTGGTGGAGAGCTACGGCCTCGTCACAGACGCCGTGGCGGAAGTTTTC
ACGCGGTATGCCCAGCAGCTTACAGGCGTCGCCGAGGTGAGAAGGGAAAT
AGACAATGTCATGTTCTTGTCATTTTCGAAGGAGAGCTGATTTTTGTCGA
ACATCCATCCACGTCTTCATGCATTTTTTTTCGGGTACTGGCTGCTGAAA
CAGCCTCTCAATATAGAACTAGCGAATAAATTGAAACGGCGAGTATGGAC
GATACGGGCGATCTGCAATTTTCCCGTTCGTGGCTTCATTTGGCTTCTCC
CTGCCTGCCACGAATCTCTAGCCCTTCGCCCATGGGGCCCCGTGCCACCA
GAGGTGTGTGCCTCGGGTTAAAGCTAAGCCATTGTCCGGCCGAACTCTGG
TATTTTGATGGAGAACGGCTGTCTTCACCGTGCTGCCACTACTGCGTCTC
TTTGTGTCCCTGCCACCAAAAAAGGTGTGGGTAAATTACGATACAACATG
CAGAAAAGTCGTTCCCGGGGAAAGCTATAAAAAGCACATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7857:1695..2537-

>mRNA_P-wetherbeei_contig7857.2.1 ID=mRNA_P-wetherbeei_contig7857.2.1|Name=mRNA_P-wetherbeei_contig7857.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig7857:1695..2537- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCCTCCCAGTCTTCTCCTCACATGCGCGATTGGCCTCTTCGTCCT
TGGTATCATCTTCGGTCGTAGCCGCTGGCCGTTTGACGACGTCGGCGTAA
CGCTGGAGGCTGGAGGTGGTGTCACGATGCTTCGGAGCAGCGGCCACGGC
ACCGGCAGTTTCCGCCTCGAAGCGTCGAGTCGAATCGACTGGAGCGCTCC
GGGAAAGGATGACAGCAGAGAAAGTGTCCCAATGGGAGGAAACGGCATTT
CCTTGGGAGCGCCTTCGCAACGACGAAAGACTTATTTCGTGGTGGAGAGC
TACGGCCTCGTCACAGACGCCGTGGCGGAAGTTTTCACGCGGTATGCCCA
GCAGCTTACAGGCGTCGCCGAGGTGTGGGTAAATTACGATACAACATGCA
GAAAAGTCGTTCCCGGGGAAAGCTATAAAAAGCACATGTGA
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