mRNA_P-wetherbeei_contig7854.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7854.2.1
Unique NamemRNA_P-wetherbeei_contig7854.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A2D4BIS2_PYTIN (Vacuolar protein sorting-associated protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIS2_PYTIN)

HSP 1 Score: 77.8 bits (190), Expect = 1.150e-14
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+  GITDA AYLLER GDV GAL L L +L ++L  LK ++ G+
Sbjct: 1155 VFPYLESHDSYKVDACLKLCKDFGITDAEAYLLERTGDVTGALTLILHSLEQKLKILKPALRGY 1218
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BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.560e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGFAA 198
            V+P+L +HD+Y +D CL LC+  GITDA AYLLER GDV GAL L L++L ++L  LK ++ G+ A
Sbjct: 1652 VFPFLESHDSYKVDACLRLCKEFGITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGYNA 1717
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BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A2P4Y1Y2_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1Y2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.230e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct:  244 VFPYLESHDSYKVDACLRLCKEFAITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 307
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A0P1AJW9_PLAHL (Vacuolar assembly/sorting protein VPS8 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJW9_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 5.410e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct: 1319 VFPYLESHDSYKVDACLRLCKEFSITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 1382
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A1E7FY24_9STRA (Vps8 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY24_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.410e-14
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGG 189
            VY YLSTHDNY  +ECL LCQ   I DA+AYLLER G+V  AL+L L+T+  R++ LK +I G
Sbjct: 1275 VYDYLSTHDNYRTEECLQLCQKYDIADASAYLLERMGNVTSALQLILQTMESRMMNLKRTIRG 1337
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A484E0X2_BRELC (Vps8 domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E0X2_BRELC)

HSP 1 Score: 75.9 bits (185), Expect = 5.410e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct: 1315 VFPYLESHDSYKVDACLRLCKEFAITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 1378
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 75.9 bits (185), Expect = 5.410e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct: 1308 VFPYLESHDSYKVDACLRLCKEFAITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 1371
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 5.420e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct: 1344 VFPYLESHDSYKVDACLKLCKDFSITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 1407
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: H3GT40_PHYRM (Vps8 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT40_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 5.450e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGF 192
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+
Sbjct: 1325 VFPYLESHDSYKVDACLRLCKEFAITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGY 1388
[Close]
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Match: A0A3F2RY97_9STRA (Vps8 domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RY97_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.390e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTLRERLVALKVSIGGFAA 198
            V+PYL +HD+Y +D CL LC+   ITDA AYLLER GDV GAL L L++L ++L  LK ++ G+ A
Sbjct: 1330 VFPYLESHDSYKVDACLRLCKEFVITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRGYNA 1395
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7854.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4BIS2_PYTIN1.150e-1456.25Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A662WX84_9STRA1.560e-1454.55Chromo domain-containing protein n=2 Tax=Nothophyt... [more]
A0A2P4Y1Y2_9STRA5.230e-1454.69Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A0P1AJW9_PLAHL5.410e-1454.69Vacuolar assembly/sorting protein VPS8 n=1 Tax=Pla... [more]
A0A1E7FY24_9STRA5.410e-1458.73Vps8 domain-containing protein n=1 Tax=Fragilariop... [more]
A0A484E0X2_BRELC5.410e-1454.69Vps8 domain-containing protein n=2 Tax=Peronospora... [more]
G4Z679_PHYSP5.410e-1454.69Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A8K1FDH6_PYTOL5.420e-1454.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GT40_PHYRM5.450e-1454.69Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A3F2RY97_9STRA7.390e-1454.55Vps8 domain-containing protein n=22 Tax=Peronospor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7854contigP-wetherbeei_contig7854:884..1908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000018037
PFAMsVps8
Model size285
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.52e-15
EggNOG OGsCOG4642@1|root,COG5253@1|root,KOG2079@1|root,KOG0229@2759|Eukaryota,KOG0231@2759|Eukaryota,KOG2079@2759|Eukaryota,1MDU3@121069|Pythiales
DescriptionVacuolar protein sorting-associated protein 8. Source PGD
Cds size285
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.8400152-CDS-P-wetherbeei_contig7854:883..9901683187004.8400152-CDS-P-wetherbeei_contig7854:883..990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7854 884..990 -
1683187004.8513784-CDS-P-wetherbeei_contig7854:1730..19081683187004.8513784-CDS-P-wetherbeei_contig7854:1730..1908Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7854 1731..1908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7854.2.1prot_P-wetherbeei_contig7854.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7854 884..1908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7854.2.1

>prot_P-wetherbeei_contig7854.2.1 ID=prot_P-wetherbeei_contig7854.2.1|Name=mRNA_P-wetherbeei_contig7854.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
VYPYLSTHDNYSLDECLSLCQAAGITDATAYLLERGGDVGGALRLTLRTL
RERLVALKVSIGGFAAAATAAPAAATAVVTPGAAAAGGGGGGGGA
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mRNA from alignment at P-wetherbeei_contig7854:884..1908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7854.2.1 ID=mRNA_P-wetherbeei_contig7854.2.1|Name=mRNA_P-wetherbeei_contig7854.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1025bp|location=Sequence derived from alignment at P-wetherbeei_contig7854:884..1908- (Phaeothamnion wetherbeei SAG_119_79)
GTGTACCCGTACCTGAGCACGCACGACAATTACTCTCTGGACGAGTGCCT
GTCGCTATGCCAGGCGGCCGGCATCACCGACGCCACCGCCTACCTCCTCG
AGCGCGGCGGCGACGTCGGCGGCGCGCTCCGCCTCACGCTGCGGACGCTG
AGGGAGCGCCTCGTCGCGCTCAAGGTCAGTTTGTGTTTTGGGGTTTTCTG
CCCTTTCATGTGGAAGCGATTTTTGGAGGGCGGCCGTGGACGGAGCAATT
GCATACTGTGTTGGGCTTTAGGATGGATCCGGGCCATTGGAAATGGCGCC
ATAATTGAGGATTATTTTTGCCGTAGATACCACAGAATCGTCTGGTGGGC
AACACATTCCTGTCGAAAGTCTGCTGACGTCATCCGTATCCCTGCTTTCT
TTGCCCCCCCGCGTCACGTTTCGCTTCGTCACAGATCGTGCTGCGAACCG
TCAACCTGAGGCAGCTCGCCGCCAGCGCCGGTGGGTCCGCCGATGCGCTT
CTGCAGGCGTCGGCGCAGCGGTCGCTGAAGCGGCTTACGGAGGACGCCGG
GACCGTCGCGGGCATGCCGGGCCGTAACGGCGGCGGCGGCGGCGTTGTAG
GCAGTCGTGTGCTGAGCCGTCTTGCGCTGGAGAGGTGAGCCACCGCCACT
GAGCCTTGTGTTTGTTTCATCGGAGTTAAGTTTCTGTGTTTGGGGCGGCA
GTGCCGCGCCGTTCCGCGTCCGATCGGGACTTCAAACCTTTGTCTTTCTT
GTGTTCCGGAGAAAACTGTGTCCTTCCACCTAGTTCCTTTGACTCTCTGA
CTGACCCTGTCTGCGCTTGTTGCGGGTTCTTGTTGCAGGCTCCAAGAAGG
GCGGGAGCTGACCTGGAGCCTGTCGGTGGCGTTGGAGCTCTGCCAGCGCG
CCTGCCCTCTGGCCTCAGGTATCGGCGGCTTTGCTGCCGCTGCCACCGCC
GCCCCTGCTGCCGCCACCGCCGTCGTGACCCCGGGCGCCGCTGCAGCCGG
CGGCGGCGGCGGCGGCGGCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7854:884..1908-

>mRNA_P-wetherbeei_contig7854.2.1 ID=mRNA_P-wetherbeei_contig7854.2.1|Name=mRNA_P-wetherbeei_contig7854.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig7854:884..1908- (Phaeothamnion wetherbeei SAG_119_79)
GTGTACCCGTACCTGAGCACGCACGACAATTACTCTCTGGACGAGTGCCT
GTCGCTATGCCAGGCGGCCGGCATCACCGACGCCACCGCCTACCTCCTCG
AGCGCGGCGGCGACGTCGGCGGCGCGCTCCGCCTCACGCTGCGGACGCTG
AGGGAGCGCCTCGTCGCGCTCAAGGTCAGTATCGGCGGCTTTGCTGCCGC
TGCCACCGCCGCCCCTGCTGCCGCCACCGCCGTCGTGACCCCGGGCGCCG
CTGCAGCCGGCGGCGGCGGCGGCGGCGGCGGCGCC
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