mRNA_P-wetherbeei_contig785.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig785.1.1
Unique NamemRNA_P-wetherbeei_contig785.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig785.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig785contigP-wetherbeei_contig785:402..5367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr50461
Model size2048
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons13
Evalue2.64e-07
EggNOG OGs2E84P@1|root,2SEN4@2759|Eukaryota,2XFBV@2836|Bacillariophyta
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002480.1
Cds size1131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.417396-UTR-P-wetherbeei_contig785:401..11641683187004.417396-UTR-P-wetherbeei_contig785:401..1164Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig785 402..1164 -
1683187004.5497255-UTR-P-wetherbeei_contig785:5111..51771683187004.5497255-UTR-P-wetherbeei_contig785:5111..5177Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig785 5112..5177 -
1683187004.560501-UTR-P-wetherbeei_contig785:5279..53671683187004.560501-UTR-P-wetherbeei_contig785:5279..5367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig785 5280..5367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.4293606-CDS-P-wetherbeei_contig785:1164..12271683187004.4293606-CDS-P-wetherbeei_contig785:1164..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 1165..1227 -
1683187004.439952-CDS-P-wetherbeei_contig785:1513..16231683187004.439952-CDS-P-wetherbeei_contig785:1513..1623Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 1514..1623 -
1683187004.4507024-CDS-P-wetherbeei_contig785:1796..19061683187004.4507024-CDS-P-wetherbeei_contig785:1796..1906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 1797..1906 -
1683187004.4612021-CDS-P-wetherbeei_contig785:2129..22541683187004.4612021-CDS-P-wetherbeei_contig785:2129..2254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 2130..2254 -
1683187004.4716153-CDS-P-wetherbeei_contig785:2508..26561683187004.4716153-CDS-P-wetherbeei_contig785:2508..2656Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 2509..2656 -
1683187004.481647-CDS-P-wetherbeei_contig785:2917..30481683187004.481647-CDS-P-wetherbeei_contig785:2917..3048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 2918..3048 -
1683187004.4913442-CDS-P-wetherbeei_contig785:3349..34941683187004.4913442-CDS-P-wetherbeei_contig785:3349..3494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 3350..3494 -
1683187004.501178-CDS-P-wetherbeei_contig785:3680..37511683187004.501178-CDS-P-wetherbeei_contig785:3680..3751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 3681..3751 -
1683187004.5105689-CDS-P-wetherbeei_contig785:4006..40631683187004.5105689-CDS-P-wetherbeei_contig785:4006..4063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 4007..4063 -
1683187004.5203896-CDS-P-wetherbeei_contig785:4405..44801683187004.5203896-CDS-P-wetherbeei_contig785:4405..4480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 4406..4480 -
1683187004.5297801-CDS-P-wetherbeei_contig785:4743..48151683187004.5297801-CDS-P-wetherbeei_contig785:4743..4815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 4744..4815 -
1683187004.53898-CDS-P-wetherbeei_contig785:5087..51111683187004.53898-CDS-P-wetherbeei_contig785:5087..5111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig785 5088..5111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig785.1.1prot_P-wetherbeei_contig785.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig785 1165..5111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig785.1.1

>prot_P-wetherbeei_contig785.1.1 ID=prot_P-wetherbeei_contig785.1.1|Name=mRNA_P-wetherbeei_contig785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=377bp
MEPSTERQPRSIVSLKRQDLEMMRLRTTAEMQAQNEAISNAEADRKAREA
EGLRRKQTMTLELSKKAEEDRQQREHEFEQVEAQRRQVTQAGWEAQQPSS
VMLKTFYTGGMSVENAKKVVEKGKVGAAAAAFRELEQPILKLKERDAEVR
RKAAEDLEARRKAKAETDAKARREKAEAEARRQAEIEMERQRLAQEAAQH
EKEQADREFAARMAEEAKLNEAEKAVLRARQAEERARFAAEAPDAVVRRL
KDGVEVSKHSRNGHTVRRVLMSEDGLQTLSWCKPDHKHLTPEKTFNLQAC
RAVRGGLDLDPTEVGRQERNLTGTAVLRQRAAADLARSFALVFDDRTIDF
TCDSAKDCRLMVTGLKGLLFPQLRHL*
back to top

mRNA from alignment at P-wetherbeei_contig785:402..5367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig785.1.1 ID=mRNA_P-wetherbeei_contig785.1.1|Name=mRNA_P-wetherbeei_contig785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4966bp|location=Sequence derived from alignment at P-wetherbeei_contig785:402..5367- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGGTACGGCCTCGAGCACTGGTGCCGTCAGTGGGCAACAGAGCCCCC
GAGCTGGCTGCGATTTGCCGTCGCCGTCCCATTCAAAGGTGAGAGCCTTT
TAGTCATTCTTCAGCGCCTTTTTCTGGCACTTCCTCGCATTGACACGGGC
ACAGCACTGTTTTCCCCCCTTTCTTCTTGCGCATTGGAAGAAGGAGAGCA
CTGGCAGCGACAACGTGTTCGACATAGGCACCCTTCCGCCTTCGCCATTG
CCGGTGATGGAGCCCTCAACGGAGCGCCAGGTGAGAAAGAAAGGCCGTCC
TTCTTGCCTCGAGGCGGGTGATGTCTTGCGAGAACCCCCGTCTGAAATTT
CGGGTTGAATGAATCAGGTGGGAATGGTTTTGCTTCCGGCAACTCTTGAG
CAATCACAACTCAGCAAAGCGCCTCACTTGCTTCTTCGGTCGGCTGCTTA
CTTTATTTTTGGTTTTTTTCTCTTGCTTACTCCCACCACTGCTGGCGGCG
GCGGCCGCCACTTGCGACTGGTCTGCGGCGGCCTTGTGTCTGCCTTAAAC
AGCCCCGGAGCATCGTCAGCCTGAAGCGGCAGGACCTCGAGATGATGCGC
CTTCGCACCACCGCCGAGATGCAGGTGCGGCACGGCATTAATGCTGCTGA
TTCTTGGGATGAAGTTTGATGGAATAAAATCTATCCGCTCTTCGCTTGAG
TATCTGGCATTTAAAAAACACTGCGTATCTTGGACAACTCACACGACGCA
ATGCGTTTAACCCTTCTCAATTTGGAGCATTAAAAGAGGAGTGATCGTCC
GGTGTGAGCGGCCGGGACTTTTTAAAACCTTTTCGAGCGCCCGATCTCTC
CCGTGGCCGGTCAAATGTTCTCGTTGAATGCGCGCAGGCCCAGAACGAGG
CCATCTCCAACGCGGAGGCGGATCGGAAGGCGCGGGAGGCGGAGGGTCTC
CGGCGCAAGCAGGTAGGAGCAAAACCGAATGAGATCTTTTTCTGCCTTGC
CTTATTAGCTCTTTCCACTTCTCTGAAGGCATATGGGCACCCGTTGAAGA
GAGATTGCCTGAACTGTTCATAAGGAGGTTGTCCTAAGAATGCCCTGTAT
GTTTCAAATCTACTCTTCTTTCCTCTTTTCTGCCATGCATGCCTAGAAGC
ATCCCTGCCTTCTATCCGCTGCTCTCATTCATTGTCACCCTTGCGCTTTC
TGTCGCCGCTGCGGTTTTCTGTCGCCGCTGCGTTATTTCATGTGCGCCGG
CAATGACGGTGCACACCAATTTTGGTGTCGACGCTGTATCCGCTTGTCTG
TTAGACGATGACATTGGAGCTTTCCAAGAAGGCAGAGGAGGACCGCCAGC
AGCGCGAACATGTTAGCTCGATTCTCCATCCGTTAGCGGTTTTGGACTTC
TGACATTGCGAATTTTCTAGAGCTTTTGGGGCGCTGCTTGGTTGTGTTTT
GCTCGTCAGGAAAAGAAACCGAACACCAGAATATATCCTGCGCGGACGAC
GTGCAAGCTACCGTGCTCATCTCTCCGCGCATACCTACTGTGCTCGCCTT
CGCCGCGCCCCTTTCTGGCGGCCGAATTTTCTGTACCTCTCCGCATGAAT
TTGTTTCGATCTGCAGGAGTTTGAGCAGGTGGAGGCGCAGCGGCGGCAGG
TGACCCAGGCGGGCTGGGAGGCGCAGCAGCCCTCCAGGTAACGTGGAAAG
AGCTGCATGCACCGGGAATGCGACTTTCGCTATGTGGGCGATGCGTGGCG
ATACTGCAAACATTCCGTCCCGCTCCTGCCCTGATGCGCTGGCCTGCCTC
TCCGCCTGCCTTCACTCTGCCTCTGTCTGTCTTTTCTCTCCCCCCTTACA
AAATTCTCGCTTTTCCTCGGCAGCGTGATGCTGAAGACGTTCTACACGGG
GGGCATGTCGGTGGAGAACGCCAAGAAGGTCGTGGAAAAAGGCAAGGTCG
GCGCCGCCGCCGCCGCCTTCCGCGAACTCGAGCAGCCCATCCTCAAGCTC
AAGGAGCGCGACGCCGAGGTCAGTCAATCAGTCGGTCGGTTTAGCTAAAT
TACGGAGGCACCTGCCCCTACAGTTTTCAGGCGGCCGGCCTGCCCGCTGC
TGTTGTTTTGCAGTCAGCCGTCGCTGCGGCCGTTTGCCACGTGTGCTGTG
TTTTTTCTGGCTGGTGAAGCTCGGCGACGGCCGACTACGAGTACCTGATC
TGCTCTCCCGACCAGATAGTCCACAACCTCCCTGGTACCGAAGGCAACAG
CCGCATCTTATTTAATTCGTTTTGCCCGGCCGTCTGCGGGTGTTGGACAC
CTGCTCGTTCTGCTCGCAGGTGAGGCGCAAGGCGGCGGAGGACCTCGAGG
CGCGCCGCAAGGCCAAGGCAGAGACCGACGCCAAGGCCCGCAGGGAGAAG
GCGGAGGCGGAGGCGCGGCGCCAGGCCGAGATCGAGATGGAGCGCCAGAG
GCGAGTTGCTGGGTTTGAGGGGGCGGTACCGCCACCATCGCCGATTCATC
GGTTGCCTCGATTCCCGTTTTGCCCTTCCACCGCTGCCGCCGCCGCTGCC
GCCGCCACCGCCGTCGCCACCGGTACTGCTGCGCTTTCAACGCTGCGCTG
CCGTCTCAAATGCTTCTCCTTTTTTACAACCTTTACCTCCCCCGTCACTC
GCCTCACCATCGCCGTTGCCAATGGCCTTGGCCGCCGCCGCGGGCCGCGT
CTTCCCAGCAGGCTGGCACAGGAGGCGGCGCAGCACGAGAAGGAGCAGGC
GGACCGTGAGTTTGCGGCGCGGATGGCGGAAGAAGCCAAGCTCAACGAGG
CGGAGAAGGCCGTGCTGCGGGCGCGCCAGGCCGAGGAGCGGGCGCGTTTC
GCCGCCGAGGTGAGCTGTTCGACTGACGAGGTGAAATGGCTGCCTCTTGC
CTGATGATTAACTTTGTGCGGTTTTGGCGGCCATGGCGATGGTAACGGCG
GCACCGATGGCGATGATGACTGCGACGATGGCTACTTCTAGCGCGTTTGC
TGCCTTCGGCATGCCTGAGTGCTTTCCAAGAGCGATCATAAGTTGGCTTC
TTATCACCTCCGCCTGACGCTGGCGTAACTGCCTTGACACCTCAACTCTG
CGAGCTGCTGCAGGCTCCGGATGCTGTGGTTCGGAGGCTCAAGGACGGCG
TCGAAGTGTCGAAGCACAGCCGCAACGGCCACACCGTCCGCCGCGTGCTC
ATGTCAGAGGACGGCCTCCAGACCCTCTCCTGGTGCAAGTGAGTCCGCAC
GCATATGTCACTGTACTGCCATTACGTCGTCGCCGCCGCTGCTACCGCCA
TTGCCCTCAAATTATTCTTTGGCCTATATCGGGTTGCAACATCTGTGAAG
ACGTGCAATCCTTGCTGACAGAGTCTGCCGTGCCTCCTCCTTTGCATTTC
AATCCCGGCCTCTTTACTTCTCTCGTTGTCGCACTGCTGTGTCAATTTTG
CCCGCGAGCAGGCCGGACCACAAGCATTTGACGCCCGAGAAGACCTTCAA
CCTGCAGGCGTGCCGTGCCGTCCGTGGCGGGCTTGACCTGGACCCCACCG
AGGTTGGACGGCAGGAAAGAAGTAGCATGAGTAGCACGCGACTGCTCCGC
GGCTTTTCTTTGTTCGTTGTGGTGTACTGGCGGGGCGAGGGAGGGCGTCC
ACAGTTAAAAATTCATGGCGAAAGCGACACGAATTCCGTTTGGCTCAAAA
CTTCCCTTCTTTTTCTTCGGCCGGCAACGACGTACAGGTTGGAGATTTGA
CCGGCACGGCGGTGCTGCGGCAGCGTGCGGCGGCGGACCTCGCCCGCAGC
TTCGCGCTCGTCTTCGACGACCGCACAATCGACTTCACATGCGACAGCGC
CAAGGCAAGTGGAAAGTTGCGGCGACAATGTGTGACGACAGCGGGGGTGG
AGACCTGGTCTGAAACTGCAGCCCGTGTAGGAAGCAGCCTGGTCACGACT
CGTTATAAAAGACCGGCAACTGCAGATTGCAACTGGATTTCGTTTCATGC
CCTCTGTGTCTTCCCTTTGCTTTCTGCGTCTTTCCTTGCTCCGGGGTTGC
TTTTGTGTTGTTGGATGACGTTTACGGTACGGAGCGAGCGTCTAACCAGC
CGTTTCCGTACGACTGCAACCTTTCCCGTGCTGGCTGCAGGACTGTCGGC
TGATGGTGACTGGCCTTAAGGGCCTTCTCTTCCCACAACTGCGCCATCTC
TGAACGTTTCCGGTCGAGAGCTGCTTTGGTTTGGAGGAGCAAGGTTATAT
GTGTGTCATAGCGGGCGCCGAAGACCATTTTTCACTGTCGGCGGTAGTGG
TGGTGGTGGTGCGGCAGGCGTTCGTCATCTTCTTTGGACTCTTTTGAAGT
GTGGTATGCGAAGCGGTTTATGTCCTTGGATGGATCGCCCGTGGTGATGC
ATATCTATGGACGTCGGCGGGGGGAATGGAAGCGAGGGGAGGCGGCTTTG
TGCTGCTGCTTCGAAGGTCGGCGATCGGTGTGAGTGGGGGCGGGTCAGGA
GGAGTGAAGCGAGTACAACAAGCCACTGTACAAACAGGCGGCCGGATGAC
GCAGCTGGCGCGCAATGACTGCATGAGAATGGCGCTGAGAGACGAGACGT
TATGAAACCGTCTCAACTTAATAGTCACTGGAAGCTGAACGCTCCAACTG
TCCTATGCCGCCCATCAAGGAGAGCGATTCATTAGTCGAGACGAACTTTC
GAGTCTTAACATCCGCGCGGCGCTGATGTACCCATCACCTCCACAGACGG
TGGCGAACGATGCAATTGTAAGTGTTCGAAACCATGTCACGCTATTTGGC
TCACGGATTTCTCGGATGCAAGCAACAGCGGGGGAAGCTGATACCACAGC
AAGGCGTAGCACACTTGGAGATGTAGCAAAGTCGTGAAAAATCGTGTGCT
CTTCCCACCATCGCCACCCATCAGGAGGAAAACAAATGCGGACGTAGACC
TGAAATCGAATTGGGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig785:402..5367-

>mRNA_P-wetherbeei_contig785.1.1 ID=mRNA_P-wetherbeei_contig785.1.1|Name=mRNA_P-wetherbeei_contig785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig785:402..5367- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCCCTCAACGGAGCGCCAGCCCCGGAGCATCGTCAGCCTGAAGCG
GCAGGACCTCGAGATGATGCGCCTTCGCACCACCGCCGAGATGCAGGCCC
AGAACGAGGCCATCTCCAACGCGGAGGCGGATCGGAAGGCGCGGGAGGCG
GAGGGTCTCCGGCGCAAGCAGACGATGACATTGGAGCTTTCCAAGAAGGC
AGAGGAGGACCGCCAGCAGCGCGAACATGAGTTTGAGCAGGTGGAGGCGC
AGCGGCGGCAGGTGACCCAGGCGGGCTGGGAGGCGCAGCAGCCCTCCAGC
GTGATGCTGAAGACGTTCTACACGGGGGGCATGTCGGTGGAGAACGCCAA
GAAGGTCGTGGAAAAAGGCAAGGTCGGCGCCGCCGCCGCCGCCTTCCGCG
AACTCGAGCAGCCCATCCTCAAGCTCAAGGAGCGCGACGCCGAGGTGAGG
CGCAAGGCGGCGGAGGACCTCGAGGCGCGCCGCAAGGCCAAGGCAGAGAC
CGACGCCAAGGCCCGCAGGGAGAAGGCGGAGGCGGAGGCGCGGCGCCAGG
CCGAGATCGAGATGGAGCGCCAGAGGCTGGCACAGGAGGCGGCGCAGCAC
GAGAAGGAGCAGGCGGACCGTGAGTTTGCGGCGCGGATGGCGGAAGAAGC
CAAGCTCAACGAGGCGGAGAAGGCCGTGCTGCGGGCGCGCCAGGCCGAGG
AGCGGGCGCGTTTCGCCGCCGAGGCTCCGGATGCTGTGGTTCGGAGGCTC
AAGGACGGCGTCGAAGTGTCGAAGCACAGCCGCAACGGCCACACCGTCCG
CCGCGTGCTCATGTCAGAGGACGGCCTCCAGACCCTCTCCTGGTGCAAGC
CGGACCACAAGCATTTGACGCCCGAGAAGACCTTCAACCTGCAGGCGTGC
CGTGCCGTCCGTGGCGGGCTTGACCTGGACCCCACCGAGGTTGGACGGCA
GGAAAGAAATTTGACCGGCACGGCGGTGCTGCGGCAGCGTGCGGCGGCGG
ACCTCGCCCGCAGCTTCGCGCTCGTCTTCGACGACCGCACAATCGACTTC
ACATGCGACAGCGCCAAGGACTGTCGGCTGATGGTGACTGGCCTTAAGGG
CCTTCTCTTCCCACAACTGCGCCATCTCTGA
back to top