mRNA_P-wetherbeei_contig7842.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7842.1.1
Unique NamemRNA_P-wetherbeei_contig7842.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7842.1.1 vs. uniprot
Match: A0A835Z841_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z841_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 9.690e-13
Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 2 
Query:  101 HIYFLNLEASSDRQLHMVRQLEGAGILSTGYTRVPAVNVTTM--VYATDGTTTTYSDDTLEVLAWDLESLEGTGGVNATTVAVFLSHLWAIHTAYVDGRSTALILEDDVDLSPPELLGASDVPRMLEL------------MPEDWTLLQLSYISMSKAQMKAL-RDLYAARHCLARRRDPC-GSDWSFWGAHAYVISRKGMRTVLSRF 676
            H++++NLE SSDR+ H  R L   G  S+   RV A++  +      T+  T       L+V A+ L S       +   +A  LSH  A+  AY  G S ALILEDD++  P  L    +V R  EL            +P  W +LQLS +  +K +   L  ++ + R  L   RD C G+  + WGA AY+ISR GM   L R+
Sbjct:   35 HVFYINLERSSDRKNHTERWLHQEGFGSSQMKRVDAIDAQSFNSTEITNELTLQVQLPCLQVRAFMLGSWS-----HPPVLAAGLSHAKAVAVAYAMGVSQALILEDDME--PVPLSNTENVNRPAELSTWRYIEYITDTLPAGWQVLQLSSLVYTKEKADLLGAEIRSGR--LWSHRDRCSGASLTVWGAGAYIISRDGMEAFLGRY 233
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BLAST of mRNA_P-wetherbeei_contig7842.1.1 vs. uniprot
Match: A0A7X3G5X0_9BURK (Uncharacterized protein n=2 Tax=Massilia TaxID=149698 RepID=A0A7X3G5X0_9BURK)

HSP 1 Score: 64.3 bits (155), Expect = 6.930e-8
Identity = 55/181 (30.39%), Postives = 82/181 (45.30%), Query Frame = 2 
Query:  335 VAVFLSHLWAIHTAYVDGRSTALILEDDVDLSPPELLGASDVPRMLELMPEDWTLLQLSYISMSKAQMKALRDLYAARHCLARRRDPCGSDWSFWGAHAYVISRKGMRTVLSRFWPGGLPAKASKEDNGFSEGSTLQKTSKRVFDLRATTNFAADYALFYMPGVFIATRPAMLPPSGFAST 877
            +A+  SHL A+ TAY  G +  L+LEDDV           D   +L   P DW +LQL ++S +   + AL +LY     L    +P     + + A AYV+SR+GM+++L+R+ P G+                L  T      + A     AD+ L+     + AT P      G AST
Sbjct:   60 LAIMASHLRAVGTAYRAGAAATLVLEDDVRSH-----HLFDGAALLASAPPDWEILQL-HVSHAPVVL-ALGELYLRHGILWHEWEP-----ACYSAGAYVVSRRGMQSLLARYCPDGV---------------ALDLTG-----VHACGKLVADHLLYRRAICYTATLPLFFNDVGLAST 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7842.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z841_9STRA9.690e-1334.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7X3G5X0_9BURK6.930e-830.39Uncharacterized protein n=2 Tax=Massilia TaxID=149... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7842contigP-wetherbeei_contig7842:40..1604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1565
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1419
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.0333672-UTR-P-wetherbeei_contig7842:39..1601683187004.0333672-UTR-P-wetherbeei_contig7842:39..160Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7842 40..160 -
1683187004.050695-UTR-P-wetherbeei_contig7842:1579..16041683187004.050695-UTR-P-wetherbeei_contig7842:1579..1604Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7842 1580..1604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187004.0421479-CDS-P-wetherbeei_contig7842:160..15791683187004.0421479-CDS-P-wetherbeei_contig7842:160..1579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7842 161..1579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7842.1.1prot_P-wetherbeei_contig7842.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7842 161..1579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7842.1.1

>prot_P-wetherbeei_contig7842.1.1 ID=prot_P-wetherbeei_contig7842.1.1|Name=mRNA_P-wetherbeei_contig7842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=473bp
MLCQSAACLAAALAVGTSHMLKAVDHIYFLNLEASSDRQLHMVRQLEGAG
ILSTGYTRVPAVNVTTMVYATDGTTTTYSDDTLEVLAWDLESLEGTGGVN
ATTVAVFLSHLWAIHTAYVDGRSTALILEDDVDLSPPELLGASDVPRMLE
LMPEDWTLLQLSYISMSKAQMKALRDLYAARHCLARRRDPCGSDWSFWGA
HAYVISRKGMRTVLSRFWPGGLPAKASKEDNGFSEGSTLQKTSKRVFDLR
ATTNFAADYALFYMPGVFIATRPAMLPPSGFASTRELSDSNRNMADFSRA
LTRDAFAGVKPPAGLEATVSDGPSDVWNASQYVFPTYDMSFSVTEESMRV
LHNACEAPGTRGMNCAYVQAMLWNFLALCTPLTTTLTTMRPSLKRRAIHR
AIVGRDGAWNAVAVFSSVAQLQGLGVPDNAVAARAAAVAYCSATRAMSTE
RFCTELSAWMEGAAVKFNILLK*
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mRNA from alignment at P-wetherbeei_contig7842:40..1604-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7842.1.1 ID=mRNA_P-wetherbeei_contig7842.1.1|Name=mRNA_P-wetherbeei_contig7842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1565bp|location=Sequence derived from alignment at P-wetherbeei_contig7842:40..1604- (Phaeothamnion wetherbeei SAG_119_79)
AACGGCGCAGGCAGGCCAGTACGCAATGCTTTGCCAAAGCGCCGCTTGCC
TTGCAGCGGCGCTGGCGGTGGGCACGTCGCACATGCTCAAAGCTGTTGAT
CACATATATTTCCTGAATCTGGAGGCAAGCAGCGACCGGCAACTGCATAT
GGTTCGCCAGCTGGAGGGGGCTGGCATTCTTTCTACGGGCTACACACGCG
TGCCTGCTGTGAACGTAACCACAATGGTCTATGCAACAGACGGCACGACT
ACAACGTATTCCGACGACACCCTCGAAGTTCTGGCATGGGATCTCGAATC
CCTAGAGGGCACGGGCGGCGTGAATGCGACAACCGTGGCCGTGTTCTTGT
CACATTTGTGGGCCATCCACACTGCCTATGTCGACGGGCGCAGCACGGCC
CTCATTCTGGAGGACGACGTCGACCTCTCTCCACCGGAGCTGCTCGGTGC
CTCAGACGTGCCGCGAATGCTGGAACTGATGCCGGAGGATTGGACGCTTC
TTCAGCTGTCGTACATTTCCATGTCAAAGGCGCAAATGAAAGCCTTACGT
GATCTTTACGCAGCCCGACATTGCCTGGCGCGCCGCCGCGATCCTTGCGG
CTCGGACTGGTCGTTTTGGGGCGCGCACGCGTATGTCATCAGCAGAAAGG
GCATGCGCACCGTGCTCTCGCGTTTCTGGCCCGGCGGGCTGCCTGCCAAA
GCATCGAAAGAAGACAATGGCTTTTCTGAAGGTTCAACTCTGCAGAAAAC
TTCAAAGCGCGTCTTCGATCTGCGCGCCACCACAAATTTCGCCGCCGATT
ACGCGCTTTTCTACATGCCTGGCGTCTTCATCGCGACGCGCCCAGCGATG
CTGCCGCCAAGCGGATTTGCGTCGACCAGGGAGCTCAGCGATTCGAACCG
GAACATGGCCGACTTTTCCCGCGCACTGACCCGAGACGCCTTTGCTGGCG
TTAAGCCGCCGGCGGGGCTGGAAGCCACGGTCAGCGATGGGCCGTCAGAT
GTTTGGAATGCATCACAATACGTCTTTCCGACATATGACATGTCCTTTTC
CGTCACGGAAGAGTCCATGCGCGTCCTGCACAATGCATGTGAAGCACCCG
GCACCCGGGGCATGAATTGCGCGTATGTGCAAGCAATGCTTTGGAATTTT
CTGGCGCTCTGCACTCCATTAACCACGACACTGACAACCATGAGGCCATC
GTTGAAACGCCGTGCAATACACCGCGCCATTGTCGGGCGCGACGGAGCTT
GGAACGCGGTCGCTGTATTTAGTAGCGTTGCTCAACTGCAAGGCCTCGGC
GTCCCTGACAATGCAGTGGCGGCACGGGCAGCCGCAGTGGCTTACTGCAG
CGCGACAAGAGCCATGTCAACAGAGCGATTCTGTACAGAGTTGTCTGCAT
GGATGGAAGGTGCCGCTGTCAAGTTTAACATCTTATTAAAATAGAGGGGA
AAGAATCGAGTGTTTGCGCTGGGCACGTTATTCTTACAAGTTTCATCAAT
AGATACAGCCCAAACTTCTAACACCCGAGTCAGAAGCTCGACCGTTCTAC
ATCAAAGTGCTGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7842:40..1604-

>mRNA_P-wetherbeei_contig7842.1.1 ID=mRNA_P-wetherbeei_contig7842.1.1|Name=mRNA_P-wetherbeei_contig7842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1419bp|location=Sequence derived from alignment at P-wetherbeei_contig7842:40..1604- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTGCCAAAGCGCCGCTTGCCTTGCAGCGGCGCTGGCGGTGGGCAC
GTCGCACATGCTCAAAGCTGTTGATCACATATATTTCCTGAATCTGGAGG
CAAGCAGCGACCGGCAACTGCATATGGTTCGCCAGCTGGAGGGGGCTGGC
ATTCTTTCTACGGGCTACACACGCGTGCCTGCTGTGAACGTAACCACAAT
GGTCTATGCAACAGACGGCACGACTACAACGTATTCCGACGACACCCTCG
AAGTTCTGGCATGGGATCTCGAATCCCTAGAGGGCACGGGCGGCGTGAAT
GCGACAACCGTGGCCGTGTTCTTGTCACATTTGTGGGCCATCCACACTGC
CTATGTCGACGGGCGCAGCACGGCCCTCATTCTGGAGGACGACGTCGACC
TCTCTCCACCGGAGCTGCTCGGTGCCTCAGACGTGCCGCGAATGCTGGAA
CTGATGCCGGAGGATTGGACGCTTCTTCAGCTGTCGTACATTTCCATGTC
AAAGGCGCAAATGAAAGCCTTACGTGATCTTTACGCAGCCCGACATTGCC
TGGCGCGCCGCCGCGATCCTTGCGGCTCGGACTGGTCGTTTTGGGGCGCG
CACGCGTATGTCATCAGCAGAAAGGGCATGCGCACCGTGCTCTCGCGTTT
CTGGCCCGGCGGGCTGCCTGCCAAAGCATCGAAAGAAGACAATGGCTTTT
CTGAAGGTTCAACTCTGCAGAAAACTTCAAAGCGCGTCTTCGATCTGCGC
GCCACCACAAATTTCGCCGCCGATTACGCGCTTTTCTACATGCCTGGCGT
CTTCATCGCGACGCGCCCAGCGATGCTGCCGCCAAGCGGATTTGCGTCGA
CCAGGGAGCTCAGCGATTCGAACCGGAACATGGCCGACTTTTCCCGCGCA
CTGACCCGAGACGCCTTTGCTGGCGTTAAGCCGCCGGCGGGGCTGGAAGC
CACGGTCAGCGATGGGCCGTCAGATGTTTGGAATGCATCACAATACGTCT
TTCCGACATATGACATGTCCTTTTCCGTCACGGAAGAGTCCATGCGCGTC
CTGCACAATGCATGTGAAGCACCCGGCACCCGGGGCATGAATTGCGCGTA
TGTGCAAGCAATGCTTTGGAATTTTCTGGCGCTCTGCACTCCATTAACCA
CGACACTGACAACCATGAGGCCATCGTTGAAACGCCGTGCAATACACCGC
GCCATTGTCGGGCGCGACGGAGCTTGGAACGCGGTCGCTGTATTTAGTAG
CGTTGCTCAACTGCAAGGCCTCGGCGTCCCTGACAATGCAGTGGCGGCAC
GGGCAGCCGCAGTGGCTTACTGCAGCGCGACAAGAGCCATGTCAACAGAG
CGATTCTGTACAGAGTTGTCTGCATGGATGGAAGGTGCCGCTGTCAAGTT
TAACATCTTATTAAAATAG
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