mRNA_P-wetherbeei_contig7840.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7840.1.1
Unique NamemRNA_P-wetherbeei_contig7840.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7840.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7840contigP-wetherbeei_contig7840:33..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categorysignal peptide
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.9053795-UTR-P-wetherbeei_contig7840:32..1521683187003.9053795-UTR-P-wetherbeei_contig7840:32..152Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7840 33..152 +
1683187003.9289916-UTR-P-wetherbeei_contig7840:533..5751683187003.9289916-UTR-P-wetherbeei_contig7840:533..575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7840 534..575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.9178052-CDS-P-wetherbeei_contig7840:152..5331683187003.9178052-CDS-P-wetherbeei_contig7840:152..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7840 153..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7840.1.1prot_P-wetherbeei_contig7840.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7840 153..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7840.1.1

>prot_P-wetherbeei_contig7840.1.1 ID=prot_P-wetherbeei_contig7840.1.1|Name=mRNA_P-wetherbeei_contig7840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MAFAAVGGPLLSRWRRTARVPSLLPMALRVFLLAAFCWWQCLAPAEDCWM
LQRRRCRLLSSATVAAAVSKVAICQRGRKIVDQSLEPPGDDGIGCWYRGG
SRGGGGGGGGGGGGGGGGGCSGGGGD*
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mRNA from alignment at P-wetherbeei_contig7840:33..575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7840.1.1 ID=mRNA_P-wetherbeei_contig7840.1.1|Name=mRNA_P-wetherbeei_contig7840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig7840:33..575+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCACGCACCATAGAACAATTTGACAGTCAGACAGACAGATGGGGCAA
GCATTCTGGCCGTTTAGAGGGTTGTTACTGGCGTAGCTGGCGTAAGCTGG
CTGGCGTGACTGGCGTCGAGATGGCGTTTGCTGCCGTTGGCGGGCCGCTG
CTGTCTCGATGGAGGCGCACCGCCAGGGTACCGTCGCTGTTGCCGATGGC
GCTGCGAGTGTTTTTGCTGGCAGCTTTTTGCTGGTGGCAGTGTCTGGCGC
CAGCGGAGGACTGCTGGATGCTGCAACGTCGACGCTGCCGGCTTTTAAGC
TCCGCCACAGTTGCGGCCGCTGTAAGTAAAGTTGCCATCTGCCAAAGAGG
GAGAAAGATAGTTGATCAGTCGCTCGAGCCGCCGGGTGACGATGGCATCG
GCTGCTGGTACCGCGGTGGCAGCCGCGGTGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGTGGCGGCGGTGGCGGCGGTTGCAGCGGCGGAGGGGGCGATTA
AGACGGCGGCGTGATAGCGCCGGCTCCCGAAAGGTCACACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7840:33..575+

>mRNA_P-wetherbeei_contig7840.1.1 ID=mRNA_P-wetherbeei_contig7840.1.1|Name=mRNA_P-wetherbeei_contig7840.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig7840:33..575+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTTGCTGCCGTTGGCGGGCCGCTGCTGTCTCGATGGAGGCGCAC
CGCCAGGGTACCGTCGCTGTTGCCGATGGCGCTGCGAGTGTTTTTGCTGG
CAGCTTTTTGCTGGTGGCAGTGTCTGGCGCCAGCGGAGGACTGCTGGATG
CTGCAACGTCGACGCTGCCGGCTTTTAAGCTCCGCCACAGTTGCGGCCGC
TGTAAGTAAAGTTGCCATCTGCCAAAGAGGGAGAAAGATAGTTGATCAGT
CGCTCGAGCCGCCGGGTGACGATGGCATCGGCTGCTGGTACCGCGGTGGC
AGCCGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGTGG
CGGCGGTTGCAGCGGCGGAGGGGGCGATTAA
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