mRNA_P-wetherbeei_contig7835.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7835.1.1
Unique NamemRNA_P-wetherbeei_contig7835.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.770e-25
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLMLRA 264
            LL+YDVT  SSF GLE WRKHLE+NADPRCVS+V GNK D  +   V+ + G AYA++  MAF+ TSA+TG+N+E AF+ LAR +LRA
Sbjct:   83 LLVYDVTNRSSFVGLEAWRKHLEANADPRCVSIVAGNKSDV-SDQLVSPKDGEAYARQRGMAFISTSAKTGDNVEEAFVTLARNILRA 169          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.470e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLML 258
            LL+YDVT  SSF  LE+WRK+LE+NADP+CVSMV GNK D       AA +  AYA  H+M FM TSA+T +N++  F E+AR ++
Sbjct:   82 LLVYDVTSQSSFDSLEIWRKNLEANADPQCVSMVAGNKCDMEGVVDEAAAR--AYADAHSMGFMMTSAKTAQNVDTLFEEVARRII 165          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: Q381R1_TRYB2 (Small GTPase, putative n=4 Tax=Trypanozoon TaxID=39700 RepID=Q381R1_TRYB2)

HSP 1 Score: 84.3 bits (207), Expect = 3.110e-16
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLM 255
            LL+YDVT   +FT L+ W +   SNA+   V M++GNK D     +V+ E+G A+A+KHN+ FMETSA+T +N++ AFL+ A ++
Sbjct:   84 LLVYDVTRRDTFTHLQTWLEDARSNANTAIVIMLIGNKCDLEKKREVSREEGEAFARKHNLVFMETSAKTAQNVDDAFLKTAAMI 168          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: V5BBM5_TRYCR (Uncharacterized protein n=2 Tax=Trypanosoma cruzi TaxID=5693 RepID=V5BBM5_TRYCR)

HSP 1 Score: 82.0 bits (201), Expect = 2.060e-15
Identity = 37/85 (43.53%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLM 255
            LL+YDVT   +FT L+ W +  ++NA+   V M++GNK D  A  QV+ E+G ++A+K+N+ FMETSA+T +N++ AF++ A ++
Sbjct:   84 LLVYDVTRRETFTHLQTWLEDAKANANTAIVIMLIGNKCDLEAKRQVSREEGESFARKNNLVFMETSAKTAQNVDDAFMKTAMMI 168          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: A0A1X0NVM5_9TRYP (Ras-related protein rab-2a n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NVM5_9TRYP)

HSP 1 Score: 82.0 bits (201), Expect = 2.450e-15
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLM 255
            LL+YDVT   +F  L+ W +  ++NA+   V M++GNK D  A  QV+ E+G A+AKK+N+ FMETSA+T +NI+ AFL+ A ++
Sbjct:   84 LLVYDVTRRETFAHLQTWIEDAKANANTAIVIMLIGNKCDLEAKRQVSREEGEAFAKKNNLFFMETSAKTAQNIDDAFLKTATVI 168          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: G0U939_TRYVY (Putative ras-related protein rab-2a n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U939_TRYVY)

HSP 1 Score: 81.3 bits (199), Expect = 4.310e-15
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLMLR 261
            LL+YDVT   +F  L+ W +   +NA+   V M++GNK D     QV+ E+G ++A+KHN+ FMETSA+T +N++ AFL+ A ++ +
Sbjct:   84 LLVYDVTRRETFMHLQTWLEDARANANTTVVIMLIGNKCDLATKRQVSREEGESFAQKHNLVFMETSAKTAQNVDDAFLKTASMIYK 170          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: A0A061J7P0_TRYRA (Rab family, other n=4 Tax=Trypanosoma TaxID=5690 RepID=A0A061J7P0_TRYRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.560e-15
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLM 255
            LL+YDVT   +FT L+ W +   +NA+   V M++GNK D  A  QV+ E+G ++AK++N+ FMETSA+T +N++ AF+  A ++
Sbjct:   84 LLVYDVTRRETFTHLQTWLEDARANANNAIVIMLIGNKCDLEAKRQVSREEGESFAKRNNLVFMETSAKTAQNVDDAFMRTATMI 168          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.820e-14
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDA-PAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELARLMLRA 264
            +L+YDVT+ +SF  LE+WR  L +NA P CV++V GNK D  PA   V+A+Q  AYA+  +MAF  TSA+T EN+   F ELAR M+ A
Sbjct:  114 VLVYDVTDATSFEALELWRAALGTNAAPDCVAVVAGNKCDMEPA---VSAQQAQAYAQGADMAFKLTSAKTAENVRELFEELARRMVAA 199          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: L8GSP6_ACACA (Ras-related protein Rab-2A, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSP6_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELAR 249
            LL+YD+T   +F  L  W +     ++   V M++GNK D  +  QV+ E+GAA+AK+HN+ F+ETSA+T EN+E AF+  AR
Sbjct:   99 LLVYDITRRETFEHLTSWLEDCRKYSNSNIVIMLIGNKCDLESKRQVSKEEGAAFAKEHNLLFLETSAKTAENVEQAFINTAR 181          
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Match: E2GMZ1_EUPOC (Rab GTPase 2d n=2 Tax=Euplotidae TaxID=100127 RepID=E2GMZ1_EUPOC)

HSP 1 Score: 78.6 bits (192), Expect = 4.840e-14
Identity = 35/83 (42.17%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAEQGAAYAKKHNMAFMETSARTGENIEAAFLELAR 249
            LL+YDVT+  SF  L+ W + ++ NA  +  ++++GNK+D     QV+ E+G A+AKKH++ F ETSA++  N+E AFL + +
Sbjct:   86 LLVYDVTKRQSFENLQKWLEEMKENAYSKMTTILIGNKIDLENERQVSYEEGQAFAKKHDLVFFETSAKSAHNVEKAFLAITQ 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7835.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPX3_9PHAE3.770e-2561.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTJ1_9STRA3.470e-1954.65GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Q381R1_TRYB23.110e-1645.88Small GTPase, putative n=4 Tax=Trypanozoon TaxID=3... [more]
V5BBM5_TRYCR2.060e-1543.53Uncharacterized protein n=2 Tax=Trypanosoma cruzi ... [more]
A0A1X0NVM5_9TRYP2.450e-1547.06Ras-related protein rab-2a n=1 Tax=Trypanosoma the... [more]
G0U939_TRYVY4.310e-1542.53Putative ras-related protein rab-2a n=1 Tax=Trypan... [more]
A0A061J7P0_TRYRA5.560e-1543.53Rab family, other n=4 Tax=Trypanosoma TaxID=5690 R... [more]
A0A836CB79_9STRA1.820e-1451.69Ras family-domain-containing protein n=1 Tax=Tribo... [more]
L8GSP6_ACACA2.530e-1444.58Ras-related protein Rab-2A, putative n=1 Tax=Acant... [more]
E2GMZ1_EUPOC4.840e-1442.17Rab GTPase 2d n=2 Tax=Euplotidae TaxID=100127 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7835contigP-wetherbeei_contig7835:1781..2965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5691.EAN80470
PFAMsRas
Model size730
Max annot lvl5653|Kinetoplastida
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.99e-18
EggNOG OGsCOG1100@1|root,KOG0098@2759|Eukaryota,3XT84@5653|Kinetoplastida
Descriptionras-related protein rab-2a
Cds size375
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.7223194-UTR-P-wetherbeei_contig7835:1780..21331683187003.7223194-UTR-P-wetherbeei_contig7835:1780..2133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7835 1781..2133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187003.7349434-CDS-P-wetherbeei_contig7835:2133..24221683187003.7349434-CDS-P-wetherbeei_contig7835:2133..2422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7835 2134..2422 -
1683187003.7477908-CDS-P-wetherbeei_contig7835:2879..29651683187003.7477908-CDS-P-wetherbeei_contig7835:2879..2965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7835 2880..2965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7835.1.1prot_P-wetherbeei_contig7835.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7835 2134..2965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7835.1.1

>prot_P-wetherbeei_contig7835.1.1 ID=prot_P-wetherbeei_contig7835.1.1|Name=mRNA_P-wetherbeei_contig7835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
LLIYDVTEPSSFTGLEVWRKHLESNADPRCVSMVVGNKVDAPAPHQVAAE
QGAAYAKKHNMAFMETSARTGENIEAAFLELARLMLRAAGGGSGGGGPQG
NVKLGASGGTSGAGGGAKTSSECC*
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mRNA from alignment at P-wetherbeei_contig7835:1781..2965-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7835.1.1 ID=mRNA_P-wetherbeei_contig7835.1.1|Name=mRNA_P-wetherbeei_contig7835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-wetherbeei_contig7835:1781..2965- (Phaeothamnion wetherbeei SAG_119_79)
TTGCTCATCTACGACGTCACGGAGCCTTCGTCATTCACGGGGCTCGAGGT CTGGCGGAAGCACCTTGAGAGCAACGCCGATCCAAGGTGAGATTTGGTCG TTGACTCTATGGTTGGCTTCGAAGACAAGTTCCTCTTCTGAGCGCAGGCA CAGATGAGGCTTCACGAGAGTCTCATTGCGGCAGTTACTAACATCTTTCA GAGAGTATATTCGGTTGGATCGTACAAATATTTCACGTCTCTTGTCGTTA TTTAACATTTTAGCTATGACTGCACGAAGGCAGACGTCGCTGATGAGCCT GTTTGTTGGTCCGTATGACGAAACGTCAAGCTGTCCTTGGGTTCCTCTTC CATCAACACTCAGAGTTGATGGCTGGCCGCTCGCTGCTTCACCTCTTTAA TGGGTAATCGTTAGAATTTGACGGAAGTCTTGTTCGCAGGCTTTGCTTTA AAGCGCCATCGAAAGCTTTATCAGAAAATTCCTTCGCATCATCTGGTTCA CGGCTTCCCCCTGTTATTCCGCTCCTCGCCTTCTCTTCTTCAGATGCGTG TCCATGGTGGTGGGCAACAAGGTCGATGCGCCGGCGCCGCACCAGGTGGC GGCGGAGCAGGGTGCGGCTTATGCCAAAAAACACAATATGGCATTCATGG AGACGTCGGCGCGGACGGGCGAAAATATCGAGGCGGCGTTCCTCGAGCTG GCGCGGCTCATGTTGCGGGCGGCGGGCGGCGGCAGCGGCGGCGGCGGGCC CCAAGGCAACGTAAAGCTCGGAGCCAGCGGCGGCACGAGCGGCGCCGGCG GCGGCGCAAAAACGTCGAGCGAATGTTGCTGAGGATGAGGTAGGGATGCG AGAAAAAGCGGAAGCTAACGGGGGAGGAAGTAGTGCGGTCCGACTGAAGG CGGGACTGGTGAGCGAGCGATCGCCGTTCCGGCGGCGGAAAAGGCCCTGC AATAATTCCTTGTTCGTCCAAAAAGGCCGGGCGCGGGAAGAATCTAGGCG GCCGCCATTTTTGGGAGAGGCCGTCGTGGCGAGAGCAGCAGCGGCGATGG CGGCATTTTGCGGCGGCGGCGGCGGCGGCGTTGGTGGCGTTGGCGGCGAC TGGTTGGATTGTTGTTCAGAGCGATTGAGGTAACGGCCCCGCGAAATATT GGGGAAGTAATAATGTCCACCAGAGTGTTGAACGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7835:1781..2965-

>mRNA_P-wetherbeei_contig7835.1.1 ID=mRNA_P-wetherbeei_contig7835.1.1|Name=mRNA_P-wetherbeei_contig7835.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig7835:1781..2965- (Phaeothamnion wetherbeei SAG_119_79)
TTGCTCATCTACGACGTCACGGAGCCTTCGTCATTCACGGGGCTCGAGGT
CTGGCGGAAGCACCTTGAGAGCAACGCCGATCCAAGATGCGTGTCCATGG
TGGTGGGCAACAAGGTCGATGCGCCGGCGCCGCACCAGGTGGCGGCGGAG
CAGGGTGCGGCTTATGCCAAAAAACACAATATGGCATTCATGGAGACGTC
GGCGCGGACGGGCGAAAATATCGAGGCGGCGTTCCTCGAGCTGGCGCGGC
TCATGTTGCGGGCGGCGGGCGGCGGCAGCGGCGGCGGCGGGCCCCAAGGC
AACGTAAAGCTCGGAGCCAGCGGCGGCACGAGCGGCGCCGGCGGCGGCGC
AAAAACGTCGAGCGAATGTTGCTGA
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