mRNA_P-wetherbeei_contig7820.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7820.4.1
Unique NamemRNA_P-wetherbeei_contig7820.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7820.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7820contigP-wetherbeei_contig7820:1760..2548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons3
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.789786-CDS-P-wetherbeei_contig7820:1759..18091683187002.789786-CDS-P-wetherbeei_contig7820:1759..1809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7820 1760..1809 +
1683187002.8034983-CDS-P-wetherbeei_contig7820:1984..20931683187002.8034983-CDS-P-wetherbeei_contig7820:1984..2093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7820 1985..2093 +
1683187002.8120892-CDS-P-wetherbeei_contig7820:2352..25471683187002.8120892-CDS-P-wetherbeei_contig7820:2352..2547Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7820 2353..2547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7820.4.1prot_P-wetherbeei_contig7820.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7820 1760..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7820.4.1

>prot_P-wetherbeei_contig7820.4.1 ID=prot_P-wetherbeei_contig7820.4.1|Name=mRNA_P-wetherbeei_contig7820.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
AQKAFQAQKATMSRSRREATLTGDLASEVITRSFEHSTQVSDLVNLYALD
GLSMTPADLERLKPHLLCHNETLTELGQSLEFCAATVEELRLRLRAANDD
FIHMQKEQLHLRRDVLEK
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mRNA from alignment at P-wetherbeei_contig7820:1760..2548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7820.4.1 ID=mRNA_P-wetherbeei_contig7820.4.1|Name=mRNA_P-wetherbeei_contig7820.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:1760..2548+ (Phaeothamnion wetherbeei SAG_119_79)
GCACAAAAGGCCTTTCAGGCCCAGAAAGCTACAATGTCTCGCAGCCGGAG
GTAAGCGAAAAGCTCTGGCCTTTTCTTTTCAACTAGGCTTCAACACGTCA
ACTGTTTGGTGCATAATCGACGAGGTGCTGCATTATAGAATCTGGCAATT
TGCACCAATTCTCTTGATATTCAGCTGATGCACTCCGACGGCGGCTCACA
TCTATCTGGCCATTTGCTGTTTCAGGGAAGCGACGCTCACGGGGGACCTC
GCGAGCGAGGTGATCACGCGAAGCTTCGAGCACTCCACCCAAGTCTCCGA
TCTCGTCAACCTCTACGCCCTTGATGGACTCTCTGTGAGGCGTGCCGGCA
CTTTTGCAAATATGCTTATCGTCCTCCTGTGGCTTATCCCCTTTCCTCAG
TTTTTGCAGCAACCGTATGCTGCTTGGGGACGCTGAGCAGAGCCATGCTC
TTGGAGATATCTCCTCTTCTCGTCTTATTTGGAAAACCCCTGACACTTGC
GACAAACGCCAATCACCCGTATCACTGCGTCGAAACCCGTCATTCGTCGT
ATTGCACTTCCTGGCCCAATCCGGCCTGCTTGCCTGCCGGCAGATGACGC
CGGCCGACCTGGAACGGCTCAAGCCACACCTGCTATGCCACAACGAGACA
CTGACGGAGCTGGGGCAGTCGCTGGAGTTCTGCGCCGCAACGGTGGAAGA
GTTGCGGCTGCGGCTGCGGGCGGCAAACGACGACTTCATTCACATGCAGA
AAGAGCAGCTGCATTTGCGGAGGGACGTGCTCGAGAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7820:1760..2548+

>mRNA_P-wetherbeei_contig7820.4.1 ID=mRNA_P-wetherbeei_contig7820.4.1|Name=mRNA_P-wetherbeei_contig7820.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:1760..2548+ (Phaeothamnion wetherbeei SAG_119_79)
GCACAAAAGGCCTTTCAGGCCCAGAAAGCTACAATGTCTCGCAGCCGGAG
GGAAGCGACGCTCACGGGGGACCTCGCGAGCGAGGTGATCACGCGAAGCT
TCGAGCACTCCACCCAAGTCTCCGATCTCGTCAACCTCTACGCCCTTGAT
GGACTCTCTATGACGCCGGCCGACCTGGAACGGCTCAAGCCACACCTGCT
ATGCCACAACGAGACACTGACGGAGCTGGGGCAGTCGCTGGAGTTCTGCG
CCGCAACGGTGGAAGAGTTGCGGCTGCGGCTGCGGGCGGCAAACGACGAC
TTCATTCACATGCAGAAAGAGCAGCTGCATTTGCGGAGGGACGTGCTCGA
GAAG
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