mRNA_P-wetherbeei_contig7820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7820.1.1
Unique NamemRNA_P-wetherbeei_contig7820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A7S4ECG4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECG4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-17
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  401 RDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAGEK-------MCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFA 703
            +DY +LA  Y   + YRDL  S P   CV+C R P   VLFPC H+ VC +C Q    GE        +C +C   +KR +P +DGRE ++YW WV EV+P LPP FA
Sbjct:  145 KDYIALADAYKLEKQYRDLT-SLPT--CVMCHRNPCHDVLFPCEHKCVCRSCLQTNGIGESREEGKWPLCPLCCQEIKRILP-SDGREVEKYWNWVLEVEPRLPPKFA 248          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A7S4HUM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUM7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.880e-14
Identity = 49/118 (41.53%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  401 RDYASLAREYLSTQVYRDLQLSAPAVD--CVVCRRR--PAGLVL----FPCSHRSVCGACWQDQPAGE----KMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKA 718
            +DY  LAR+Y ST+ YR    + P  +  CV+CRR    A +VL    FPC HR VC  C++++  G      MC +CG  +K  +   +G E +RYW WVEEVKP +P  F  +F+A
Sbjct:  367 KDYPGLARQYKSTEPYRG---NNPGGNPRCVLCRREGEDASVVLRRVFFPCEHRCVCNRCYREERMGPGRRANMCPLCGEEIK-FVAERNGSERERYWDWVEEVKPFIPAAFVRKFRA 480          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XL80_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL80_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.490e-8
Identity = 43/139 (30.94%), Postives = 66/139 (47.48%), Query Frame = 2
Query:  401 RDYASLAREYLSTQVY-RDLQLSAPA-VDCVVCRRRPAGLVLFPCSHRSVCGACWQD-------QPAGEKMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAAAVILQMKAEGTYVDDPPRKPCCI 790
            ++Y  L + +   Q Y R    S P+   C+ C       V FPC H  VC  C +        QP+   +C +C T ++  +P+  G+E ++YW WV EVKP +P  F  EFK A   L+  +  +  +  PR+   I
Sbjct:   98 KNYPELVKGFKQLQPYTRHPDGSYPSHTRCIYCANAGPTSVFFPCQHMCVCDDCIKAAKLSPDAQPSC--LCPICMTDIRLILPHT-GKEEEKYWKWVMEVKPSMPSHFKQEFKEAGKNLRKNSIAS-TEPAPRRSTII 232          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XMJ4_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMJ4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.620e-8
Identity = 35/88 (39.77%), Postives = 44/88 (50.00%), Query Frame = 2
Query:  482 CVVCRRRPAGLVLFPCSHRSVCGACWQDQ-------PAGEK-MCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAA 721
            CV C       V FPC H  VC  C +         P+ E  MC VC   ++  +P+  G+E ++YW WV EVKP LP  F  EFK A
Sbjct:  178 CVYCANARPTSVFFPCQHMCVCNDCIEQNNLSPDYSPSAEWCMCPVCAVDIRLILPHT-GKEEEKYWRWVLEVKPSLPSHFKQEFKEA 264          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A6H5JCM1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.560e-7
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  380 MQQDNCCRDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAG--------EKMCAVC 598
            ++ D  C+DY S A+EY  T  +RD   +     CV+C++R A  VLFPC H+ VC  C + +  G        E +C VC
Sbjct:  105 IEDDEPCKDYISFAKEYYLTAPFRD---TGGKQTCVICQKRKASAVLFPCEHKCVCARCIEREGFGATRTASEREALCPVC 182          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: A0A662XC14_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XC14_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.720e-7
Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 2
Query:  482 CVVCRRRPAGLVLFPCSHRSVCGACWQDQ-------PAGE------KMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPPLPPGFACEFKAA 721
            CV C       V FPC H  VC  C +         P+ E       + AVC   ++  +P+  G+E ++YW WV EVKP LP  F  EFK A
Sbjct:   54 CVYCANARPTSVFFPCQHMCVCNDCIEQNSLSPDYSPSAEWWYVLSLLSAVCAVDIRLILPHT-GKEEEKYWKWVMEVKPSLPSHFKQEFKEA 145          
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Match: D8LJV1_ECTSI (Similar to Cell growth regulator with RING finger domain 1 (Cell growth regulatory gene 19 protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.280e-7
Identity = 53/206 (25.73%), Postives = 71/206 (34.47%), Query Frame = 2
Query:    5 PLPKSWIQHVDEASKKTFYYHKGTGLTQWSTPREEPPGGGAKPLPGRPAGASSENLEAFAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAATDFQAAEISSVAATAMQQDNCCRDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSHRSVCGACWQDQPAG--------EKMCAVC 598
            P   SW +H D +SK+ FYY   TG T W   R  PP    + L     G   E +                                                  V A  D    E        ++ D   +DY S A+EY  T  +RD   +     CV+C++R A  VLFPC H+ VC  C + +  G        E +C VC
Sbjct:    6 PAVGSWTKHWDPSSKQHFYYDPSTGQTTWG--RSVPPEKSTESLKREGEGNLLEGI------------------FLQQAKETAQHHDVRPRRRKRGVSKDRKNNNRVFADDDLPQNET-------IEDDEPRKDYISFAKEYYLTAPFRD---TGGKQICVICQKRKASAVLFPCEHKCVCARCIESEGFGAMRKASEREALCPVC 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S4ECG4_9STRA1.070e-1745.37Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S4HUM7_9STRA1.880e-1441.53Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A662XL80_9STRA2.490e-830.94RING-type domain-containing protein n=1 Tax=Nothop... [more]
A0A662XMJ4_9STRA2.620e-839.77RING-type domain-containing protein n=1 Tax=Nothop... [more]
A0A6H5JCM1_9PHAE1.560e-737.04RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A662XC14_9STRA2.720e-736.56Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D8LJV1_ECTSI7.280e-725.73Similar to Cell growth regulator with RING finger ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7820contigP-wetherbeei_contig7820:127..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008879184.1
Model size908
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.54e-12
EggNOG OGs2C2EW@1|root,2SGVY@2759|Eukaryota
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-01_009780.1
DescriptionRing finger
Cds size564
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.8855393-UTR-P-wetherbeei_contig7820:126..2351683187002.8855393-UTR-P-wetherbeei_contig7820:126..235Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 127..235 -
1683187002.9027612-UTR-P-wetherbeei_contig7820:799..9461683187002.9027612-UTR-P-wetherbeei_contig7820:799..946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 800..946 -
1683187002.9154599-UTR-P-wetherbeei_contig7820:1125..12131683187002.9154599-UTR-P-wetherbeei_contig7820:1125..1213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7820 1126..1213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.8945377-CDS-P-wetherbeei_contig7820:235..7991683187002.8945377-CDS-P-wetherbeei_contig7820:235..799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7820 236..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7820.1.1prot_P-wetherbeei_contig7820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7820 236..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7820.1.1

>prot_P-wetherbeei_contig7820.1.1 ID=prot_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MAAAFGGVTTKAAPSDQQHHPPKRKSSGKVAAATDFQAAEISSVAATAMQ
QDNCCRDYASLAREYLSTQVYRDLQLSAPAVDCVVCRRRPAGLVLFPCSH
RSVCGACWQDQPAGEKMCAVCGTAVKRAIPYADGREAQRYWAWVEEVKPP
LPPGFACEFKAAAVILQMKAEGTYVDDPPRKPCCIVT*
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mRNA from alignment at P-wetherbeei_contig7820:127..1213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7820.1.1 ID=mRNA_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1087bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:127..1213- (Phaeothamnion wetherbeei SAG_119_79)
AAGGCCCCTGCCGAAGAGTTGGATTCAGCACGTCGATGAAGCGAGCAAGA AGACGTTTTACTACCATAAAGGGACCGGGCTCACCCAGGTACTACGACCA ACGTGTTCGAAGGTCCCTCGTTGCGGTTATCGAGCGCTTCCATGCTTCTC GTCATGATGTCGGATCCGCCATATTTGACATAGATAGAGAAAACCATGCG ATTTGAAGAATATGTGTAGGACGGCATCAACTAGATTCCACGTCATTTTC TCAAAAACTTGCCACAGTGGTCGACGCCACGCGAAGAGCCTCCAGGCGGT GGCGCAAAGCCTTTACCCGGCCGACCCGCCGGAGCGTCCTCTGAAAACCT CGAAGCATTTGCTGGAGCGGCAGCATCATCATCCCTGCTCACCCCAGAGG CGTCTGCGGCACTCATGGCGGCAGCGTTCGGCGGCGTGACAACAAAGGCG GCGCCGTCGGACCAGCAGCACCACCCTCCGAAGCGCAAGAGCTCCGGCAA GGTGGCCGCGGCCACCGACTTTCAGGCGGCCGAGATATCATCGGTGGCGG CGACCGCGATGCAGCAGGACAACTGCTGCCGCGACTACGCCAGCCTCGCC CGCGAGTACCTTTCTACGCAGGTCTATCGCGACCTGCAGCTGTCCGCGCC GGCTGTGGACTGCGTCGTCTGCCGGCGGCGGCCGGCGGGCCTCGTCCTCT TTCCGTGCAGCCACCGGAGCGTCTGTGGGGCGTGCTGGCAGGACCAGCCG GCGGGCGAAAAGATGTGCGCTGTCTGCGGAACCGCCGTGAAGCGGGCAAT CCCTTACGCCGACGGGAGGGAGGCGCAGCGGTACTGGGCGTGGGTGGAAG AAGTGAAGCCACCGCTGCCGCCTGGATTCGCCTGCGAGTTCAAGGCGGCC GCCGTCATCCTCCAGATGAAGGCGGAAGGGACGTACGTGGACGACCCGCC CCGCAAACCATGCTGCATCGTCACATGACGGTGGCGATGGCGGCGACCTG TGGCAAGCGCTTTGGCGGGAGACGCTGCTCGCCGGCTTGCCGCTGCTGCG ATTGGGAGCCGCTAGTCTTATGTTTATTTGTTCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7820:127..1213-

>mRNA_P-wetherbeei_contig7820.1.1 ID=mRNA_P-wetherbeei_contig7820.1.1|Name=mRNA_P-wetherbeei_contig7820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig7820:127..1213- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCAGCGTTCGGCGGCGTGACAACAAAGGCGGCGCCGTCGGACCA
GCAGCACCACCCTCCGAAGCGCAAGAGCTCCGGCAAGGTGGCCGCGGCCA
CCGACTTTCAGGCGGCCGAGATATCATCGGTGGCGGCGACCGCGATGCAG
CAGGACAACTGCTGCCGCGACTACGCCAGCCTCGCCCGCGAGTACCTTTC
TACGCAGGTCTATCGCGACCTGCAGCTGTCCGCGCCGGCTGTGGACTGCG
TCGTCTGCCGGCGGCGGCCGGCGGGCCTCGTCCTCTTTCCGTGCAGCCAC
CGGAGCGTCTGTGGGGCGTGCTGGCAGGACCAGCCGGCGGGCGAAAAGAT
GTGCGCTGTCTGCGGAACCGCCGTGAAGCGGGCAATCCCTTACGCCGACG
GGAGGGAGGCGCAGCGGTACTGGGCGTGGGTGGAAGAAGTGAAGCCACCG
CTGCCGCCTGGATTCGCCTGCGAGTTCAAGGCGGCCGCCGTCATCCTCCA
GATGAAGGCGGAAGGGACGTACGTGGACGACCCGCCCCGCAAACCATGCT
GCATCGTCACATGA
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