mRNA_P-wetherbeei_contig7818.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7818.5.1
Unique NamemRNA_P-wetherbeei_contig7818.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7818.5.1 vs. uniprot
Match: A0A3C0TTC2_9PROT (DUF3576 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTC2_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 1.320e-12
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   22 LLILSGCGSTETESRYPEKIGKNRYDPAPTGPKSDESLFGEGGIFGLG 165
            + +L+GCG  E E+RYPEK+G+ R DPAP+G K+++SLFG GG+FGLG
Sbjct:   27 IFLLNGCGGLEREARYPEKVGR-RTDPAPSGEKNNDSLFGSGGLFGLG 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7818.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C0TTC2_9PROT1.320e-1260.42DUF3576 domain-containing protein n=1 Tax=Alphapro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7818contigP-wetherbeei_contig7818:2804..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.4550512-UTR-P-wetherbeei_contig7818:2803..28151683187002.4550512-UTR-P-wetherbeei_contig7818:2803..2815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7818 2804..2815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.475268-CDS-P-wetherbeei_contig7818:2815..29681683187002.475268-CDS-P-wetherbeei_contig7818:2815..2968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7818 2816..2968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7818.5.1prot_P-wetherbeei_contig7818.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7818 2816..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7818.5.1

>prot_P-wetherbeei_contig7818.5.1 ID=prot_P-wetherbeei_contig7818.5.1|Name=mRNA_P-wetherbeei_contig7818.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MGCLLILSGCGSTETESRYPEKIGKNRYDPAPTGPKSDESLFGEGGIFGL
G
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mRNA from alignment at P-wetherbeei_contig7818:2804..2968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7818.5.1 ID=mRNA_P-wetherbeei_contig7818.5.1|Name=mRNA_P-wetherbeei_contig7818.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig7818:2804..2968+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATTACTGCGATGGGCTGTCTGCTTATACTTTCCGGCTGCGGCTCTAC
GGAAACCGAATCGCGCTATCCTGAGAAAATCGGCAAGAATCGCTATGATC
CGGCGCCCACGGGCCCCAAGTCCGACGAATCCCTGTTTGGTGAAGGCGGC
ATATTCGGGCTTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7818:2804..2968+

>mRNA_P-wetherbeei_contig7818.5.1 ID=mRNA_P-wetherbeei_contig7818.5.1|Name=mRNA_P-wetherbeei_contig7818.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig7818:2804..2968+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTGTCTGCTTATACTTTCCGGCTGCGGCTCTACGGAAACCGAATC
GCGCTATCCTGAGAAAATCGGCAAGAATCGCTATGATCCGGCGCCCACGG
GCCCCAAGTCCGACGAATCCCTGTTTGGTGAAGGCGGCATATTCGGGCTT
GGC
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