mRNA_P-wetherbeei_contig7816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7816.1.1
Unique NamemRNA_P-wetherbeei_contig7816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A316YER9_9BASI (Uncharacterized protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YER9_9BASI)

HSP 1 Score: 130 bits (328), Expect = 1.840e-33
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:  166 TGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQ 438
            TG R++LLIGINY GTRAELRGCINDV +++Q L+++   + + MVVLTDDQRDP   PTR N+T A+ WLV+  +PGD LFFHYSGHGGQ
Sbjct:  120 TGKRKALLIGINYHGTRAELRGCINDVQNVRQFLLQRAGYKAEDMVVLTDDQRDPRSIPTRQNMTAAMHWLVSGAQPGDALFFHYSGHGGQ 210
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A7S0N8K3_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8K3_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 4.580e-33
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:  160 PPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQG-DRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQ 441
            P TG R++LLIGINY GTR+ELRGC+NDV H+K  L+  GF +  D MVVLTDDQRDPNY PT+ NI  AL WL    +PGD LF+H+SGHG Q+
Sbjct:  147 PLTGRRKALLIGINYKGTRSELRGCVNDVHHIKSFLLANGFTETPDTMVVLTDDQRDPNYLPTKMNIINALGWLSRGAQPGDILFWHFSGHGSQE 241
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A7R9USH2_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9USH2_DIALT)

HSP 1 Score: 128 bits (321), Expect = 6.400e-33
Identity = 62/96 (64.58%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:  160 PPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFP-QGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQV 444
            P TG RR+LLIGINY GT AEL+GCINDV  M+QLLV  GFP   + M VLTDD RD   RPT+ANI +A RWL     PGD LFFH+SGHG QQ+
Sbjct:   49 PLTGRRRALLIGINYYGTAAELKGCINDVRAMRQLLVDHGFPASAEHMRVLTDDTRDARARPTKANILEACRWLTAGAAPGDVLFFHFSGHGAQQL 144
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A2U9R434_PICKU (Metacaspase-1 n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A2U9R434_PICKU)

HSP 1 Score: 127 bits (319), Expect = 7.150e-33
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  166 TGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQVSL 450
            +G RR+LL+GINY GT  +L GCINDV +M++ L+ QGF  GD MV+LTDDQ++P   PTRAN+ +A++WLV+D RPGD  FFHYSGHGG++  L
Sbjct:   25 SGKRRALLVGINYFGTNNQLNGCINDVHNMEKFLLTQGFTPGD-MVILTDDQQNPMGIPTRANMLRAMQWLVSDARPGDSFFFHYSGHGGEEKDL 118
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A8J6CAR4_DIALT (WW domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAR4_DIALT)

HSP 1 Score: 128 bits (321), Expect = 6.810e-32
Identity = 62/96 (64.58%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:  160 PPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFP-QGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQV 444
            P TG RR+LLIGINY GT AEL+GCINDV  M+QLLV  GFP   + M VLTDD RD   RPT+ANI +A RWL     PGD LFFH+SGHG QQ+
Sbjct:  177 PLTGRRRALLIGINYYGTAAELKGCINDVRAMRQLLVDHGFPASAEHMRVLTDDTRDARARPTKANILEACRWLTAGAAPGDVLFFHFSGHGAQQL 272
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A1Z8JI96_PICKU (Metacaspase-1 n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A1Z8JI96_PICKU)

HSP 1 Score: 127 bits (320), Expect = 2.230e-31
Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  166 TGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQVSL 450
            +G RR+LLIGINY GT  +L GCINDV +M++ L+ QGF  GD MV+LTDDQ++P   PTRAN+ +A++WLV+D RPGD  FFHYSGHGG++  L
Sbjct:  401 SGKRRALLIGINYFGTNNQLNGCINDVHNMEKFLLTQGFTPGD-MVILTDDQQNPMGIPTRANMLRAMQWLVSDARPGDSFFFHYSGHGGEEKDL 494
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A099P4T8_PICKU (Metacaspase-1 n=2 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P4T8_PICKU)

HSP 1 Score: 127 bits (319), Expect = 3.700e-31
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  166 TGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQVSL 450
            +G RR+LL+GINY GT  +L GCINDV +M++ L+ QGF  GD MV+LTDDQ++P   PTRAN+ +A++WLV+D RPGD  FFHYSGHGG++  L
Sbjct:  160 SGKRRALLVGINYFGTNNQLNGCINDVHNMEKFLLTQGFTPGD-MVILTDDQQNPMGIPTRANMLRAMQWLVSDARPGDSFFFHYSGHGGEEKDL 253
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: R9A9V6_WALI9 (Metacaspase-1A n=1 Tax=Wallemia ichthyophaga (strain EXF-994 / CBS 113033) TaxID=1299270 RepID=R9A9V6_WALI9)

HSP 1 Score: 124 bits (310), Expect = 4.010e-31
Identity = 59/103 (57.28%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:  136 GGGGMT--HIPPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQ 438
            GGG +   +   TG R++LLIGINY  T++ELRGCINDV +M++ L+ +G+   D MV+LTDDQR+P   PTRANIT+A+ WLV++ +P D LF+HYSGHGGQ
Sbjct:   70 GGGNVEFRYSQATGKRKALLIGINYFNTKSELRGCINDVQNMQRFLLHRGYKPED-MVILTDDQRNPMSHPTRANITRAIGWLVSNAQPNDSLFWHYSGHGGQ 171
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A2A9MJ51_9APIC (ICE family protease (Caspase) p20 domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MJ51_9APIC)

HSP 1 Score: 127 bits (318), Expect = 4.550e-31
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:  157 IPPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVK-QGFPQGDR-MVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQV 444
            I P+G R++LLIGINY GTRAELRGC+NDV  MK LL    GF      MVVLTDD  +  YRPTR N+ KA+RWL  D RPGD LFFHYSGHGG+QV
Sbjct:  442 ILPSGRRKALLIGINYRGTRAELRGCVNDVHRMKNLLCSIYGFHDSSTTMVVLTDDNPNALYRPTRNNMLKAMRWLSIDNRPGDSLFFHYSGHGGRQV 539
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BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Match: A0A2P6NRX0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRX0_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 2.710e-30
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:  166 TGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGF---PQGDRMVVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQ 438
            TG R++LLIGINY G+ AELRGCINDV+ +KQ L+ +GF   PQ   MVVLTDDQ D    PTRAN+  A++WLVT   PGD LFFHYSGHG Q
Sbjct:  161 TGRRKALLIGINYKGSTAELRGCINDVMRLKQFLLSKGFLDTPQ--TMVVLTDDQHDRTRSPTRANMIAAMKWLVTGAMPGDSLFFHYSGHGSQ 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A316YER9_9BASI1.840e-3364.84Uncharacterized protein n=1 Tax=Acaromyces ingoldi... [more]
A0A7S0N8K3_9CHLO4.580e-3363.16Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7R9USH2_DIALT6.400e-3364.58Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A2U9R434_PICKU7.150e-3360.00Metacaspase-1 n=1 Tax=Pichia kudriavzevii TaxID=49... [more]
A0A8J6CAR4_DIALT6.810e-3264.58WW domain-containing protein n=1 Tax=Diacronema lu... [more]
A0A1Z8JI96_PICKU2.230e-3161.05Metacaspase-1 n=1 Tax=Pichia kudriavzevii TaxID=49... [more]
A0A099P4T8_PICKU3.700e-3160.00Metacaspase-1 n=2 Tax=Pichia kudriavzevii TaxID=49... [more]
R9A9V6_WALI94.010e-3157.28Metacaspase-1A n=1 Tax=Wallemia ichthyophaga (stra... [more]
A0A2A9MJ51_9APIC4.550e-3165.31ICE family protease (Caspase) p20 domain-containin... [more]
A0A2P6NRX0_9EUKA2.710e-3063.83Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7816contigP-wetherbeei_contig7816:198..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4909.A0A099P4T8
Preferred namesnf21
PFAMsBromodomain,HSA,Helicase_C,QLQ,SNF2_N,SnAC
Model size450
Max annot lvl4751|Fungi
KEGG koko:K11786
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010959,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016514,GO:0016584,GO:0016586,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022411,GO:0022414,GO:0022607,GO:0030554,GO:0031055,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032879,GO:0032984,GO:0032986,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0034756,GO:0035639,GO:0036094,GO:0040029,GO:0042393,GO:0042623,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061587,GO:0065007,GO:0070013,GO:0070035,GO:0070577,GO:0070603,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0140030,GO:0140033,GO:0140097,GO:0140110,GO:1900390,GO:1900393,GO:1900400,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Exons3
Evalue6.06e-32
EggNOG OGsCOG0553@1|root,COG5076@1|root,KOG1546@1|root,KOG0386@2759|Eukaryota,KOG1546@2759|Eukaryota,KOG1827@2759|Eukaryota,38FDR@33154|Opisthokonta,3NX7W@4751|Fungi,3QNKM@4890|Ascomycota,3RS5K@4891|Saccharomycetes
Descriptionto Saccharomyces cerevisiae STH1 (YIL126W)
Cds size450
COG categoryBK
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187002.3323925-CDS-P-wetherbeei_contig7816:197..3711683187002.3323925-CDS-P-wetherbeei_contig7816:197..371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7816 198..371 -
1683187002.3455825-CDS-P-wetherbeei_contig7816:732..9001683187002.3455825-CDS-P-wetherbeei_contig7816:732..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7816 733..900 -
1683187002.354769-CDS-P-wetherbeei_contig7816:971..10791683187002.354769-CDS-P-wetherbeei_contig7816:971..1079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7816 972..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7816.1.1prot_P-wetherbeei_contig7816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7816 198..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7816.1.1

>prot_P-wetherbeei_contig7816.1.1 ID=prot_P-wetherbeei_contig7816.1.1|Name=mRNA_P-wetherbeei_contig7816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
GPTACQCRRRPPASPSAGPPASPPASPPASPPAFPPTMGYGAAAGGGGGM
THIPPTGSRRSLLIGINYPGTRAELRGCINDVVHMKQLLVKQGFPQGDRM
VVLTDDQRDPNYRPTRANITKALRWLVTDVRPGDCLFFHYSGHGGQQVSL
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mRNA from alignment at P-wetherbeei_contig7816:198..1079-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7816.1.1 ID=mRNA_P-wetherbeei_contig7816.1.1|Name=mRNA_P-wetherbeei_contig7816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig7816:198..1079- (Phaeothamnion wetherbeei SAG_119_79)
GGGCCTACGGCGTGCCAATGCCGCCGTCGGCCGCCGGCATCCCCGTCGGC
AGGCCCACCGGCGTCCCCACCGGCGTCCCCACCGGCGTCCCCACCGGCGT
TCCCACCGGTATGGCAATGGGGGTTCCGGTCGGCGTCGTCGCGGGCGGCG
GCTACGGCGGCGGTGGGCAGTATCCGCAGACGATGGGGTACGGGGCGGCG
GCCGGCGGCGGAGGTGGGATGACGCACATACCGCCGACGGGGTCGCGGCG
GTCGCTGTTGATCGGCATCAACTACCCGGGCACGCGGGCGGAGCTGCGGG
GTTGCATCAACGACGTCGTGCACATGAAGCAGCTGCTGGTCAAGCAGGTG
CGCTTTTGATTTGGTGTTTGTCTTTCTGGCCTTTTATATGTGGTTCGGGG
TTTATGAATCTGTTACGCACAGTTTTTCGGACTGGCAAATCTTGTCTAGC
GCTTCCCGACGGCAAACCCTTTCTCTCTTCAATCGTCGTCGCTGTTGCAA
CTCTGAGGCTTCTCGTTCATTGGGTGAACCCGCACTCGACTGCATTGCCG
TTTTCATTGCAACTTCAGTTCCCAACTTCTTCGTTCCTTCCTCTTTCAGC
TTTTGTCTGCCTCTTCTATCCTGTTTCGTCTTTCTTCCTTCTCGTTCTCT
TTGCTTTTCTTGTTCTCCGACATCTGCGATACTCCGACAACTGCGATAAA
CTGAACAGGGCTTCCCACAGGGGGACCGGATGGTGGTGCTGACGGACGAC
CAGAGGGACCCCAACTACCGCCCGACGCGCGCCAATATCACCAAGGCCCT
GCGGTGGCTTGTCACGGACGTGCGGCCAGGGGACTGCCTCTTTTTCCACT
ATTCGGGACACGGCGGGCAGCAGGTGAGCCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7816:198..1079-

>mRNA_P-wetherbeei_contig7816.1.1 ID=mRNA_P-wetherbeei_contig7816.1.1|Name=mRNA_P-wetherbeei_contig7816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig7816:198..1079- (Phaeothamnion wetherbeei SAG_119_79)
GGGCCTACGGCGTGCCAATGCCGCCGTCGGCCGCCGGCATCCCCGTCGGC
AGGCCCACCGGCGTCCCCACCGGCGTCCCCACCGGCGTCCCCACCGGCGT
TCCCACCGACGATGGGGTACGGGGCGGCGGCCGGCGGCGGAGGTGGGATG
ACGCACATACCGCCGACGGGGTCGCGGCGGTCGCTGTTGATCGGCATCAA
CTACCCGGGCACGCGGGCGGAGCTGCGGGGTTGCATCAACGACGTCGTGC
ACATGAAGCAGCTGCTGGTCAAGCAGGGCTTCCCACAGGGGGACCGGATG
GTGGTGCTGACGGACGACCAGAGGGACCCCAACTACCGCCCGACGCGCGC
CAATATCACCAAGGCCCTGCGGTGGCTTGTCACGGACGTGCGGCCAGGGG
ACTGCCTCTTTTTCCACTATTCGGGACACGGCGGGCAGCAGGTGAGCCTT
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