mRNA_P-wetherbeei_contig781.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig781.2.1
Unique NamemRNA_P-wetherbeei_contig781.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 9.360e-57
Identity = 91/141 (64.54%), Postives = 118/141 (83.69%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVKN 649
            R+A RNYEILE+  AGIEL G+EVKSCR S+I++DEGFAQAK GQ +LHG+HIA  G +N F+QHE +R RRLLLHK+EI++LE   A KG+T+VPLK++F+D+NRLKVEI L  GK+ RDKR+DI+ RD+KR++QR+ KN
Sbjct:    4 RKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNRLKVEIGLALGKNVRDKREDIKARDAKRDIQRISKN 144          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A835YRQ5_9STRA (Small protein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.460e-52
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 2
Query:  215 LIKRRQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVK 646
            + K +QA RNYEILE  EAGIEL GTEVKS R  R S+DEG+A AK G+  LHGVHIAP+ ++NA+ QHEAKR RRLLLHK+EI++LE  T   G T VPL +YFN  N LK+ +AL RGK+ RDKRDDI++R++KR+LQR VK
Sbjct:   23 IAKNKQAYRNYEILETFEAGIELLGTEVKSARGGRCSIDEGYAAAKRGECVLHGVHIAPYATSNAYDQHEAKRPRRLLLHKREIKRLEDMTTRAGYTAVPLTLYFNHKNLLKISVALARGKNERDKRDDIQQREAKRDLQRAVK 166          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S2S2L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2L9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.890e-50
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVK 646
            +QA RNYE LE LEAGI L GTEVK+ RD RI + +GFAQ K G+ +L  VHI P  S+  FFQHEA+R R+LLLHK +IR+  Q    K LT+VP+K YFN+ NRLK+++AL RGK+TRDKR+DIR RD+ REL+R +K
Sbjct:    9 KQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNRLKIQLALARGKNTRDKREDIRRRDASRELKRAIK 148          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S2S2R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2R4_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.250e-49
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVK 646
            +QA RNYE LE LEAGI L GTEVK+ RD RI + +GFAQ K G+ +L  VHI P  S+  FFQHEA+R R+LLLHK +IR+  Q    K LT+VP+K YFN+ NRLK+++AL RGK+TRDKR+DIR RD+ REL+R +K
Sbjct:   87 KQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNRLKIQLALARGKNTRDKREDIRRRDASRELKRAIK 226          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA)

HSP 1 Score: 163 bits (412), Expect = 6.790e-47
Identity = 82/140 (58.57%), Postives = 106/140 (75.71%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVK 646
            R A RNYEIL+  EAGI L GTEVKSCR +++ L +G+ + K+G+ +L  VHIA HG+T AFFQHE  R RRLLLHK+EIR+LE+ +  +GLT+VPL+ YFN+ NR+KVEI L +GK   DKR  I+ERD KRE+ R +K
Sbjct:   52 RLARRNYEILDDFEAGISLLGTEVKSCRANQMQLRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHKREIRKLEKESEQRGLTIVPLRCYFNEQNRMKVEIGLAKGKKNEDKRATIKERDQKREISRQLK 191          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: F0Y4W0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4W0_AURAN)

HSP 1 Score: 157 bits (396), Expect = 3.890e-45
Identity = 79/140 (56.43%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVK 646
            R+A  +Y ++  +EAGI L GTEVKSCR++ ++L +GFA+ + G ++LH V IAPH +T  +FQHEAK  RRLLLHK EIR+L+   A +G T+VPL  YFND N LKVE+AL +GK+ RDKR DI+ERD KR +QR+ K
Sbjct:    5 RKARFDYHVVRTMEAGIALTGTEVKSCRNNNVNLRDGFARVEGGSVWLHNVDIAPHATTARYFQHEAKAKRRLLLHKAEIRKLDGELADQGSTLVPLAFYFNDKNLLKVELALCKGKNVRDKRQDIKERDDKRMMQRISK 144          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S2C7I4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.650e-45
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVKN 649
            R A RNYEILE LE GI+L GTEV SCR  R+++ +GFA  K G+++L  V+IA H +T ++FQHE  R R+LLLHKKE+R  +Q    +GLT+VPLK YF +  +LK+E+ LG+GK+ RDKR DI+ RD KREL R++KN
Sbjct:   43 RPARRNYEILETLECGIKLVGTEVSSCRQGRMNMQDGFAVIKEGEVWLRNVNIAVHETTGSYFQHEPTRERKLLLHKKEVRNFDQQIKREGLTLVPLKAYFTNG-KLKIEMGLGKGKNVRDKRQDIKNRDGKRELSRMMKN 182          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT)

HSP 1 Score: 156 bits (395), Expect = 1.520e-44
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQR 637
            RQA +NYE+LE  EAGI L GTEVKSCR  +I+L +G+ Q K+G+ +L  VHIA H  +  FFQH+  R+RRLLL+K+EIR+L+ A   KGLT+VP+K YFN  NRLK++IAL RGK+  DKRD I++RD+ RE++R
Sbjct:   40 RQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIARHQFSGTFFQHDETRSRRLLLNKREIRKLDAAVQQKGLTIVPVKAYFNCDNRLKLQIALARGKNVADKRDTIKQRDTDREVKR 176          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A7S0EKF1_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EKF1_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 4.470e-43
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  206 RLPLIKRRQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVKN 649
            R  +   + A RN+EI++ LEAG+ L+GTEVKSCRD RI L +G+      + +LH V+IA H +T  FFQH+  R+RRLLLHK EIR+L      KGLT+VPL  YFN+ N+LKV+I L RGKD +DKR+ I+ R+ +RE+QR +K+
Sbjct:   60 RRQVASNKMARRNFEIVQELEAGVSLYGTEVKSCRDGRIQLRDGYXXXXXXECWLHNVNIAMHKTTGKFFQHDETRSRRLLLHKAEIRKLGAECDKKGLTIVPLSAYFNEENKLKVQIGLARGKDLQDKRETIKRREGEREVQRQIKD 207          
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Match: A0A2W4XJP1_9CYAN (SsrA-binding protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4XJP1_9CYAN)

HSP 1 Score: 151 bits (381), Expect = 1.280e-42
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 2
Query:  227 RQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEGFAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQATATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQRVVKNQ 652
            RQA   YEIL+  EAGI LFGTEVKS R+ +++L +GFA  K G+++LH VHI+PH  T + + HE +R R+LLLHK+EIR+L   T  KGLT+VPLK+YF D  R+KV IALGRGK   DKR+ ++++   RE+ RV+K Q
Sbjct:   20 RQARFQYEILDTYEAGIALFGTEVKSIREGKVNLRDGFANVKRGEVWLHNVHISPHSMTISAYNHEPRRVRKLLLHKQEIRKLIGQTEQKGLTLVPLKMYFKDG-RVKVVIALGRGKKLHDKRESLKKKQDTREIARVIKGQ 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig781.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKD0_ECTSI9.360e-5764.54SsrA-binding protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YRQ5_9STRA2.460e-5263.19Small protein B n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2S2L9_9STRA3.890e-5060.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2S2R4_9STRA4.250e-4960.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3EVW1_9EUKA6.790e-4758.57Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
F0Y4W0_AURAN3.890e-4556.43Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2C7I4_9STRA6.650e-4556.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4FCI8_CHRCT1.520e-4457.66Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S0EKF1_9EUKA4.470e-4352.03Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A2W4XJP1_9CYAN1.280e-4254.93SsrA-binding protein n=1 Tax=Phormidesmis priestle... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig781contigP-wetherbeei_contig781:2299..3237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKD0
PFAMsSmpB
Model size724
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.56e-58
EggNOG OGsCOG0691@1|root,2S5AD@2759|Eukaryota
DescriptionSmpB protein
Cds size636
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.9796836-UTR-P-wetherbeei_contig781:2298..23351683187001.9796836-UTR-P-wetherbeei_contig781:2298..2335Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig781 2299..2335 +
1683187002.0286827-UTR-P-wetherbeei_contig781:3186..32371683187002.0286827-UTR-P-wetherbeei_contig781:3186..3237Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig781 3187..3237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.998108-CDS-P-wetherbeei_contig781:2335..27551683187001.998108-CDS-P-wetherbeei_contig781:2335..2755Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig781 2336..2755 +
1683187002.009452-CDS-P-wetherbeei_contig781:2970..31861683187002.009452-CDS-P-wetherbeei_contig781:2970..3186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig781 2971..3186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig781.2.1prot_P-wetherbeei_contig781.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig781 2336..3186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig781.2.1

>prot_P-wetherbeei_contig781.2.1 ID=prot_P-wetherbeei_contig781.2.1|Name=mRNA_P-wetherbeei_contig781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MNDAKQKSPYRVIARNRFVKQAVARSLASFLLIFAGKNSTKNCKPTSVLR
AFTFLDRLPLIKRRQASRNYEILERLEAGIELFGTEVKSCRDSRISLDEG
FAQAKNGQLYLHGVHIAPHGSTNAFFQHEAKRTRRLLLHKKEIRQLEQAT
ATKGLTMVPLKVYFNDSNRLKVEIALGRGKDTRDKRDDIRERDSKRELQR
VVKNQSWQHKD*
back to top

mRNA from alignment at P-wetherbeei_contig781:2299..3237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig781.2.1 ID=mRNA_P-wetherbeei_contig781.2.1|Name=mRNA_P-wetherbeei_contig781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig781:2299..3237+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCGTGGACGCGTGGGTCCCTGGCAACTTGCTTTCGATGAACGACGCGA AGCAGAAGTCTCCATACAGGGTAATTGCGCGCAATAGGTTCGTCAAACAA GCAGTGGCACGTTCCTTGGCCAGTTTTCTTCTCATCTTTGCTGGGAAAAA TTCAACAAAAAACTGCAAACCAACCTCTGTCCTCAGAGCTTTCACTTTTC TGGATCGCCTTCCGCTTATTAAACGCAGGCAAGCTTCGCGAAACTACGAG ATCCTGGAGCGTCTTGAGGCAGGAATCGAACTTTTCGGAACGGAGGTGAA ATCATGTCGAGACAGCCGGATTTCTCTTGATGAGGGCTTTGCTCAGGCGA AAAACGGCCAGCTGTATCTTCATGGGGTGCACATCGCTCCACACGGAAGC ACGAATGCTTTTTTCCAACATGAGGCCAAGCGAACGCGTCGGCTCCTTCT GCACAAGGTGAGCGATGATTTCGGTTGCTAGGTTGATTGCTAAAAAGGTA CGAGAAAGGCATATTGTCACCGTAGGCCACGTTTCCACCGGCATCCTGAC AATGTTTTAGAGTTTTGCGATGGTATGCTGCCCGTTTGTTTGTGTGGTAA TTGTTTCTCCGCTCACATCGCGCCTCGGTCCATTACCCCATTACCCCATC TCGCCTGCTCAATTGCTATCAGAAGGAGATTCGGCAGCTGGAGCAGGCTA CAGCGACAAAAGGGCTGACTATGGTCCCATTAAAGGTGTATTTCAATGAT AGCAATCGCCTCAAGGTGGAGATTGCGCTGGGACGGGGGAAGGACACCCG CGACAAGCGGGACGACATCCGGGAGAGAGATTCCAAGCGGGAGCTGCAGC GTGTCGTCAAGAACCAGAGCTGGCAACATAAAGATTAGATCGGCGATACC CTTTCTTTGCTCTTTCAATTTTTCTATAAAACTCACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig781:2299..3237+

>mRNA_P-wetherbeei_contig781.2.1 ID=mRNA_P-wetherbeei_contig781.2.1|Name=mRNA_P-wetherbeei_contig781.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig781:2299..3237+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGACGCGAAGCAGAAGTCTCCATACAGGGTAATTGCGCGCAATAG
GTTCGTCAAACAAGCAGTGGCACGTTCCTTGGCCAGTTTTCTTCTCATCT
TTGCTGGGAAAAATTCAACAAAAAACTGCAAACCAACCTCTGTCCTCAGA
GCTTTCACTTTTCTGGATCGCCTTCCGCTTATTAAACGCAGGCAAGCTTC
GCGAAACTACGAGATCCTGGAGCGTCTTGAGGCAGGAATCGAACTTTTCG
GAACGGAGGTGAAATCATGTCGAGACAGCCGGATTTCTCTTGATGAGGGC
TTTGCTCAGGCGAAAAACGGCCAGCTGTATCTTCATGGGGTGCACATCGC
TCCACACGGAAGCACGAATGCTTTTTTCCAACATGAGGCCAAGCGAACGC
GTCGGCTCCTTCTGCACAAGAAGGAGATTCGGCAGCTGGAGCAGGCTACA
GCGACAAAAGGGCTGACTATGGTCCCATTAAAGGTGTATTTCAATGATAG
CAATCGCCTCAAGGTGGAGATTGCGCTGGGACGGGGGAAGGACACCCGCG
ACAAGCGGGACGACATCCGGGAGAGAGATTCCAAGCGGGAGCTGCAGCGT
GTCGTCAAGAACCAGAGCTGGCAACATAAAGATTAG
back to top