mRNA_P-wetherbeei_contig7801.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7801.1.1
Unique NamemRNA_P-wetherbeei_contig7801.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 7.700e-41
Identity = 73/158 (46.20%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 IVAWNLLRDASSPVSSSLTCLQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVLHGPVTLPLGLLPAFV 474
            IVA++ LR A S +SSSL  LQG DR+A++ SQ W   ++ W+++P H  Y +SNAPLRHVST+R+G +VAVAG+ G A+YS    RWR+FG+++QER ++V+G+CWWG+ A+    R   G      +LL+ R HL + +++  P+ LP+G+ P F+
Sbjct:  683 IVAFDFLRRARSNLSSSLLSLQGSDRIALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYVAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHG----FILLLFSRKHLSSDALMIPPIRLPVGMRPLFM 836          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.370e-27
Identity = 67/159 (42.14%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 IVAWNLLRDAS-SPVSSSLTCLQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVLHGPVTLPLGLLPAFV 474
            IV + +LR A  +  + +  CLQG + +A L  + W+P ++ W  V     Y+  N P+  V+ + SG  +AVAG  GLALYS  QRRWR+FG+V QER + V+G+ WWG+DAV  V +    AG    +L+Y R HL+  S+L  PV LP G  P F+
Sbjct:  498 IVRYEMLRWARHAAFAHTALCLQGVNTLAFLEQRPWNPRLLSWAHVTVPPAYSV-NVPVTLVAQSPSGQQLAVAGKRGLALYSRPQRRWRLFGNVHQERELEVAGMTWWGEDAVVVVAKLWSRAGC--DILVYSRHHLDNSSLLCDPVPLPPGTRPLFL 653          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A2P6N4E3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N4E3_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 2.220e-16
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   61 LQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGA----GPRHQVLLYPRTHLEAKSVLHGPVTLPLGLLPAFV 474
            L G DR+ +LS +  +   + W+ +     Y   N P+R V   R G  +AVAG  G+ LY+   +RW++FGD DQER+I  + L W+ D  + A + +G        P++++L YPR+HL+A ++L    +LPL   P F+
Sbjct:  939 LVGEDRLLLLSYKGKELDDIKWRHLQIPNMYLLDNWPIRKVEMNREGTQIAVAGQRGVTLYNDLNKRWKIFGDRDQERSIECACLSWYKDIVIIASLATGNKVKPEENPQYELLFYPRSHLDASTLLLR-FSLPLNRTPLFM 1079          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A1Y1I3Y9_KLENI (RIC1 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3Y9_KLENI)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-14
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   61 LQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVL 429
            +Q  DRV ++ S   +   +   +VP  R+Y A+N P+ HV+    G+++A+AG  GL LY+   +RWRVFGD+ QE+ +   GL W G   VA + R    A    ++ LYPR HL+  S+L
Sbjct:  431 MQAEDRVLLVQSDDEEELKLQHLVVP--RNYLAANWPVLHVAANEDGSYLAIAGRRGLTLYNIRAKRWRVFGDIAQEKQVACVGLLWLGRIVVACLHRE---ATNSFELCLYPRYHLDESSLL 548          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A388LK90_CHABU (RIC1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LK90_CHABU)

HSP 1 Score: 80.5 bits (197), Expect = 1.220e-14
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   61 LQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVL 429
            +Q  DRV ++ S + D   M   ++P    Y ASN P+ HV+    G+++A+AG  G+ LY+   +RWRVFGD+ QER +R +G+ W G   V    +   G     ++  YPR HL+  S+L
Sbjct:  462 MQADDRVLLIKSDEKDELTMQHLVIP--HAYMASNWPVFHVAPNDDGSYLAIAGRRGIILYNLRTKRWRVFGDISQERRVRCAGILWMGSMVVICNDKESNGG---FELNFYPRYHLDDSSLL 579          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A6J1T8B2_FRAOC (Protein RIC1 homolog n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T8B2_FRAOC)

HSP 1 Score: 80.1 bits (196), Expect = 1.670e-14
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  124 WQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSG-LCWWGDDAVAAVVRSGGGAGPRHQVLLYPR 402
            W +VP    Y+A+N P+R+ +   SG H+AVAG AGLALYS A R+W++FG   QER+I VSG L WWG   V A       A    Q+ LYPR
Sbjct:  498 WVVVPLPSTYSAANWPIRYTAMDLSGEHLAVAGRAGLALYSVANRKWKLFGSESQERDIIVSGGLLWWGSYVVLAAYSV---ASDCDQLRLYPR 588          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A6P8YG89_THRPL (Protein RIC1 homolog n=2 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YG89_THRPL)

HSP 1 Score: 79.0 bits (193), Expect = 4.210e-14
Identity = 46/94 (48.94%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  124 WQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSG-LCWWGDDAVAAVVRSGGGAGPRHQVLLYPR 402
            W +VP    Y+A+N P+R+ +   SG H+AVAG AGLALYS   RRW++FG   QER+I VSG L WWG   V A       A    Q+ LYPR
Sbjct:  494 WVVVPLPSTYSAANWPIRYTAMDLSGEHLAVAGRAGLALYSVGTRRWKLFGSESQERDIIVSGGLLWWGSYIVLAAYSV---ASDCDQLRLYPR 584          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A176WQE0_MARPO (RIC1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WQE0_MARPO)

HSP 1 Score: 75.9 bits (185), Expect = 4.830e-13
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   61 LQGPDRVAVLSSQQWDPHIMFWQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVL 429
            LQG DRV ++ S + D   +   ++P    Y   N P+ HV+    G ++A+AG  G+ LY    ++WRVFGDV QER ++  GL W G   V    R    +   +++ LYPR HL+  S+L
Sbjct:  398 LQGEDRVLLVQSDEEDQLKIQHLVLPL--SYIGVNWPVLHVAANEDGTYLAIAGRRGVILYDMQLKKWRVFGDVTQERQVQCVGLLWVGKIVVVCNYRE---SSKSYELSLYPRYHLDETSLL 515          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A061S7S9_9CHLO (Protein ric1 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S7S9_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 4.960e-13
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 1
Query:  151 YAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVL 429
            Y A+N P+ H + +  G  +A AG  GLALYS    +WR+FGDV QER+I V  L W     V A VR+ G + P  ++LLYPR HL+  S+L
Sbjct:  574 YMATNWPIMHAAVSADGYDIACAGLRGLALYSRRSAKWRLFGDVSQERSISVKALVWL-PKVVVACVRAEGSSAPA-ELLLYPRYHLDNSSLL 664          
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Match: A0A210QAN5_MIZYE (Protein RIC1 homolog n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QAN5_MIZYE)

HSP 1 Score: 75.5 bits (184), Expect = 6.720e-13
Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   61 LQGPDR-------VAVLSSQQWDPHIMF----WQIVPCHRDYAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNIRVSG-LCWWGDDAVAAVVRSGGGAGPRHQVLLYPRT 405
            LQG D+       V+  S+ + + H++     WQI+P    Y A+N P+R+ +  RSG ++AVAG  GLA Y+   R+W++FG+  QER++ VSG + WW D    A        G R ++  YPR+
Sbjct:  425 LQGEDKLYMNTSDVSQKSTGRTESHLLVGNKHWQIIPISHSYLATNWPIRYAAVDRSGQYLAVAGKTGLAHYNFLNRKWKLFGNETQERDLVVSGGMAWWKDFICVACYNI---VGQRDEIKCYPRS 548          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB77_ECTSI7.700e-4146.20SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CZK3_9STRA5.370e-2742.14RIC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A2P6N4E3_9EUKA2.220e-1635.21Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1Y1I3Y9_KLENI1.200e-1438.21RIC1 domain-containing protein n=1 Tax=Klebsormidi... [more]
A0A388LK90_CHABU1.220e-1436.59RIC1 domain-containing protein n=1 Tax=Chara braun... [more]
A0A6J1T8B2_FRAOC1.670e-1448.94Protein RIC1 homolog n=2 Tax=Frankliniella occiden... [more]
A0A6P8YG89_THRPL4.210e-1448.94Protein RIC1 homolog n=2 Tax=Thrips palmi TaxID=16... [more]
A0A176WQE0_MARPO4.830e-1336.59RIC1 domain-containing protein n=2 Tax=Marchantia ... [more]
A0A061S7S9_9CHLO4.960e-1346.24Protein ric1 n=2 Tax=Tetraselmis sp. GSL018 TaxID=... [more]
A0A210QAN5_MIZYE6.720e-1336.22Protein RIC1 homolog n=2 Tax=Pectinidae TaxID=6566... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7801contigP-wetherbeei_contig7801:1401..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LB77
PFAMsACBP,RIC1
Model size474
Max annot lvl2759|Eukaryota
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.26e-41
EggNOG OGsKOG2006@1|root,KOG2006@2759|Eukaryota
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-27_004900.2
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size474
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.5354712-CDS-P-wetherbeei_contig7801:1400..15381683187001.5354712-CDS-P-wetherbeei_contig7801:1400..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7801 1401..1538 +
1683187001.5457451-CDS-P-wetherbeei_contig7801:1969..23051683187001.5457451-CDS-P-wetherbeei_contig7801:1969..2305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7801 1970..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7801.1.1prot_P-wetherbeei_contig7801.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7801 1401..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7801.1.1

>prot_P-wetherbeei_contig7801.1.1 ID=prot_P-wetherbeei_contig7801.1.1|Name=mRNA_P-wetherbeei_contig7801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
IVAWNLLRDASSPVSSSLTCLQGPDRVAVLSSQQWDPHIMFWQIVPCHRD
YAASNAPLRHVSTARSGAHVAVAGAAGLALYSAAQRRWRVFGDVDQERNI
RVSGLCWWGDDAVAAVVRSGGGAGPRHQVLLYPRTHLEAKSVLHGPVTLP
LGLLPAFV
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mRNA from alignment at P-wetherbeei_contig7801:1401..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7801.1.1 ID=mRNA_P-wetherbeei_contig7801.1.1|Name=mRNA_P-wetherbeei_contig7801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=905bp|location=Sequence derived from alignment at P-wetherbeei_contig7801:1401..2305+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGGCGTGGAATCTGCTGCGGGACGCGAGCTCTCCGGTTTCGTCGTC ACTGACGTGCCTACAGGGCCCCGACCGCGTGGCCGTGCTTTCGTCGCAAC AGTGGGATCCGCACATCATGTTCTGGCAGATCGTTCCGGTGAGTCGAGGC TGTTTCCTCTCCTCATTCCGGTGGTCTGATGGGACCGTTCTTCAGTGCCG CTTTTGTTTTGGTTTGTATGTTATGCAGTCGCGTCGGTGGCTCGGAAAGT GGTAGAGCCGTCGCTGCTGCTGGTGATGCAAGCAGAAGATAGGTGATTTT ACCTTTGAAAAAAGAAGACCTGCTGGCATAGGAGCCGCTTGTCGGGCGAC CGTATCCGTTGTTTACATCTATCACCTGCCTCAGCCGATAGATCGATCGA TGCATTATGCCACGTTTGGGGTTTTGTGTTGCTCATGGAAACATTTTTTA CCCAGCTCTTCCTCCGCATCCGCCGTATGGTCCTACATTGAGTGTCAATG TCTTACCGCTCGTGCTCTCCATCCCCCCTCCTCCTTTCTGCCGATGCCAT GTCCGGTCTCCCTTTGCAGTGCCACCGCGATTACGCCGCCTCCAACGCGC CGCTGCGGCACGTCAGCACGGCGCGCTCCGGCGCTCACGTCGCCGTCGCC GGCGCAGCGGGATTGGCGCTCTACTCAGCCGCGCAGCGCCGCTGGCGCGT CTTCGGCGACGTCGACCAGGAGAGAAACATCCGGGTTTCGGGGCTCTGTT GGTGGGGCGACGATGCGGTGGCGGCGGTCGTCCGCTCCGGCGGCGGCGCC GGGCCGCGGCACCAGGTGCTGCTGTATCCGCGGACGCACCTGGAAGCCAA GTCAGTCCTGCACGGGCCCGTGACGCTTCCGCTTGGGCTCCTTCCAGCAT TCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7801:1401..2305+

>mRNA_P-wetherbeei_contig7801.1.1 ID=mRNA_P-wetherbeei_contig7801.1.1|Name=mRNA_P-wetherbeei_contig7801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig7801:1401..2305+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGGCGTGGAATCTGCTGCGGGACGCGAGCTCTCCGGTTTCGTCGTC
ACTGACGTGCCTACAGGGCCCCGACCGCGTGGCCGTGCTTTCGTCGCAAC
AGTGGGATCCGCACATCATGTTCTGGCAGATCGTTCCGTGCCACCGCGAT
TACGCCGCCTCCAACGCGCCGCTGCGGCACGTCAGCACGGCGCGCTCCGG
CGCTCACGTCGCCGTCGCCGGCGCAGCGGGATTGGCGCTCTACTCAGCCG
CGCAGCGCCGCTGGCGCGTCTTCGGCGACGTCGACCAGGAGAGAAACATC
CGGGTTTCGGGGCTCTGTTGGTGGGGCGACGATGCGGTGGCGGCGGTCGT
CCGCTCCGGCGGCGGCGCCGGGCCGCGGCACCAGGTGCTGCTGTATCCGC
GGACGCACCTGGAAGCCAAGTCAGTCCTGCACGGGCCCGTGACGCTTCCG
CTTGGGCTCCTTCCAGCATTCGTC
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