mRNA_P-wetherbeei_contig78.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZQ88_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ88_9STRA) HSP 1 Score: 234 bits (596), Expect = 7.110e-76 Identity = 113/153 (73.86%), Postives = 127/153 (83.01%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLAT 459
G DVETK V+DPL FSKDE ALFR R VELKHGR+ MLATLGY+ AEV+HPLYDGK+ GL AISQVP+AGW QI+AAI ++ELT+GKQD+ENKAPGDLGFG FNPF +D FA LQLKELKNGRLAMMG GM+V E LTGQTPL LA+
Sbjct: 47 GADVETKGVWDPLGFSKDEAALFRRRVVELKHGRICMLATLGYLVAEVYHPLYDGKIPAGLGAISQVPMAGWLQIIAAIGVVELTVGKQDFENKAPGDLGFGLGFNPFPNDPEKFAALQLKELKNGRLAMMGIMGMMVQEGLTGQTPLAQLAS 199
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4EVU7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EVU7_VITBC) HSP 1 Score: 216 bits (550), Expect = 6.350e-69 Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
G DVET+ V+DPL FSKDE +L+RYR VELKHGRVAMLA LGY AE+WHPLYDGKV PGL AISQVP AGW QI+A IA IEL+IGKQD+EN+APGDLGFG NPF +D FA+LQLKE+KNGRLAM+ GM+V E +TGQT L L
Sbjct: 46 GADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFVAELWHPLYDGKVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLGFG--INPFENDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQL 194
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: D7FPU8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU8_ECTSI) HSP 1 Score: 207 bits (526), Expect = 3.520e-65 Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLAT 459
G DVET VFDPL + KD+ +LFR R VELKHGRVAMLA GY+ AE WHPLYDGK++PGL A+ ++PLA W QI+ AIA++ELT+GKQDYENKAPG+LG FG A+NP+ D+ AF++LQLKELKNGRLAM+ G +V E LTGQT + L +
Sbjct: 50 GADVETDGVFDPLGYGKDDASLFRRRAVELKHGRVAMLAVTGYLFAEQWHPLYDGKLSPGLKALGELPLAAWVQILGAIAVVELTVGKQDYENKAPGELGNFGQAWNPYPDNPVAFSKLQLKELKNGRLAMLAIMGEMVQEKLTGQTAIEQLTS 203
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: W7TFG9_9STRA (Light harvesting complex protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFG9_9STRA) HSP 1 Score: 204 bits (519), Expect = 2.870e-64 Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNLA 456
G DVET V+DPL FSKDEG+L+RYR VELKHGR+AMLA LG +E +HPLYDGK++PG+ AI ++P W QI+A I +IELT+GKQD ENKAPGDLGFG FNPF +D FAELQLKELKNGRLAM+G G+++ E++TGQT +A
Sbjct: 40 GSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVSEFYHPLYDGKISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLGFGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIA 191
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4GZZ5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GZZ5_9ALVE) HSP 1 Score: 167 bits (423), Expect = 7.330e-50 Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQT 438
G D+ET+ FDPLK +KDE LFRYREVELKHGR+AMLA LGY TAE + P +DG V GL AI +VP AGW QI+ AI EL+ GKQ +++APGD GFG F + D FAELQLKELKNGRLAM+G + ++ EA TGQT
Sbjct: 44 GADMETRGPFDPLKLAKDEN-LFRYREVELKHGRLAMLAFLGYCTAEAYRPFFDGAVPNGLGAIGKVPTAGWLQILLAIGAYELSFGKQK-DDRAPGDYGFGIKF--YEDQPEKFAELQLKELKNGRLAMIGISAVLAAEAATGQT 185
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A7R9U311_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U311_9STRA) HSP 1 Score: 152 bits (385), Expect = 5.960e-44 Identity = 85/153 (55.56%), Postives = 107/153 (69.93%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEV-WHPLYDGKVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDL-GFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
G DVET +DPL +K+E AL R R VELKHGRVAMLA LG + + +HPL+DGK+ G+ AIS+VP AGW QI+ AIA IEL G D E+K PGD+ GFG+AF P +D + +LQL+ELK+GRLAM+ G +V E +TGQT L L
Sbjct: 42 GADVETNGFWDPLGLAKNEEALGRRRHVELKHGRVAMLAVLGNIVTDAGYHPLFDGKIPAGIGAISKVPTAGWVQILFAIAAIELRYGGYD-ESKTPGDIAGFGSAFIP--EDPVEYEKLQLRELKHGRLAMIAILGELVQEQITGQTVLQQL 191
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.230e-43 Identity = 92/156 (58.97%), Postives = 105/156 (67.31%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPG-LAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLGFGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
G DVET VFDPL +KDE +L+R R +ELKHGRVAMLA LG + +H + P LAA++QV P+A W QI AI IELTIGKQD N+APGD+GFGAAF P DDA FA LQLKELKNGRLAMM G V E LTGQ P+ L
Sbjct: 39 GSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFW-QIFLAIGAIELTIGKQDTANRAPGDVGFGAAFIP--DDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQL 191
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.370e-43 Identity = 90/158 (56.96%), Postives = 103/158 (65.19%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDG------KVAPGLAAISQVPLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
G+DVET +FDPL FSKDE +LFR R VELKHGR+ MLAT G + H L D + L + Q P+A QI+ AI ++ELT G QDY NKAPGDLG FG AF P DDA AELQLKELKNGRLAMMG GM+V E LT Q P+ L
Sbjct: 48 GIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVH-LPDAVFSNPRPIGALLQVLDQRPVAA-IQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKP--DDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQL 201
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.350e-41 Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWH---PLYDGKVAPGLAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQTPLTNL 453
G D+ET V+DPL+ SKD+G LF+YREVELKHGRVAMLATLG + H P++ LAA+SQ+ P+A W QI A+ EL+IGKQDYENKAPGD+ FG P +D + ++QL+ELKNGRLAM+ GM V EALTGQ P+ L
Sbjct: 20 GADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNP--RPLAALSQILAERPVAFW-QIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDE--WEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQL 173
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC) HSP 1 Score: 141 bits (355), Expect = 2.620e-39 Identity = 89/153 (58.17%), Postives = 104/153 (67.97%), Query Frame = 1
Query: 1 GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHPLYDGKVAPG--LAAISQV----PLAGWAQIVAAIAIIELTIGKQDYENKAPGDLG-FGAAFNPFADDAAAFAELQLKELKNGRLAMMGFTGMVVHEALTGQT 438
G DVET VFDPLKFS+DE +LFR R VELKHGR+AMLA LGY L D + L+A+++V P A AQIVAAIA IEL G+QDYENKAPGDLG FG +F D F + QL+ELKNGRLAM+G GM+V E LTGQ+
Sbjct: 51 GADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAA-AQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKN--SDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQS 200 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig78.7.1 >prot_P-wetherbeei_contig78.7.1 ID=prot_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp GVDVETKTVFDPLKFSKDEGALFRYREVELKHGRVAMLATLGYVTAEVWHback to top mRNA from alignment at P-wetherbeei_contig78:6628..7464+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig78.7.1 ID=mRNA_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig78:6628..7464+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig78:6628..7464+ >mRNA_P-wetherbeei_contig78.7.1 ID=mRNA_P-wetherbeei_contig78.7.1|Name=mRNA_P-wetherbeei_contig78.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig78:6628..7464+ (Phaeothamnion wetherbeei SAG_119_79)back to top |