mRNA_P-wetherbeei_contig78.11.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig78.11.1
Unique NamemRNA_P-wetherbeei_contig78.11.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A7R9V7A6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V7A6_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 2.030e-25
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    4 FLSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLL 423
            FLS +D+ IFQ  N V+ AW +LIV P+W   + +V  + + Y ALYAAL++N + +GG           STL GV  L A+  A LPAW HY+AFDL+ G+ I  +   +  +P+ ++A +LV +++ GP GL +Y ++
Sbjct:    5 FLSYTDDDIFQCLNGVLLAWALLIVAPKWRPTQAIVLLSAMFYSALYAALIFNMIYQGGA----LDFAAMSTLPGVAKLFATPEAVLPAWVHYIAFDLWTGRWIAMDA-ASRQIPRLLIAPILVATLMLGPVGLFMYLMI 139          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A250XKW1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKW1_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.690e-23
Identity = 56/142 (39.44%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 LFLSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKT----MEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLY 414
            LF   SDEQ+FQL N+V+PAWV+LI+ P+W+  + +V     L C LYA L+ N +       L  T    ++   +  GV  LL++++  LPAW H+ AFDL+ G+ I ++ + +   P+ ++A +L+ SM+FGP GLL Y
Sbjct:    5 LFSQFSDEQLFQLVNVVLPAWVLLIISPKWKTTQAVVTLAASLMCLLYALLLANTL-------LSPTSDIQIQDMFSYDGVARLLSAKSTVLPAWVHFAAFDLWTGRWIAQDAM-SRRFPRLLLAPLLLLSMMFGPVGLLGY 138          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A8J4AXJ2_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXJ2_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 3.190e-23
Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   16 SDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQKT 459
            +DEQ+F L N+++P W++L + PRW   + +     +    LYAAL+ + +        K  +    T  GV  LLA++AA LP W H+ AFDL+VG+ I +++++ N  PQ ++A  L  +M+FGP GLLLY L+     +I ++K+
Sbjct:   40 TDEQLFNLVNIILPGWLLLALAPRWRHSQTVSAVAAIAMSLLYAALLISSLFFSK-SDEKLDLADMFTYEGVVRLLANRAAALPCWVHFAAFDLWVGRWIADDSIKHNV-PQMLLAPCLFTTMMFGPAGLLLYHLIRTRFQKIGRKKS 185          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A150GUA7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GUA7_GONPE)

HSP 1 Score: 100 bits (248), Expect = 2.710e-22
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQKT 459
            L+ +D+Q+F L N+V+PAW++L V P+W   + +  A  LL  ALY AL+ + +     G +    + F TL GV   L+ + A LP W HY AFDL+VG+ +  +++    +PQ ++   L  ++  GP GLL Y+L+     +  KQKT
Sbjct:    6 LAYTDKQLFDLINVVLPAWLLLAVAPKWRHTKTVSAAAALLMSALYTALLVSFMVAPPDGEVLDFSDMF-TLEGVGRALSKKTAVLPCWVHYAAFDLWVGRWMAADSVE-RGVPQLLLIPCLFLTLFAGPAGLLAYWLIRMPFNKAGKQKT 154          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: E1ZNY5_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNY5_CHLVA)

HSP 1 Score: 99.4 bits (246), Expect = 4.780e-22
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQ-NILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLY 414
            L  +DEQ+F LQN V+ AW +L V PR     ++V AT L + ALY  LM + + +G           F + +GV  LL+ Q   LPAW HYV FDL+ G+  +L+   R   +PQ ++AV L F+++ GP+GLLLY
Sbjct:    6 LPFTDEQLFPLQNGVLVAWALLAVAPRARFTMRVVTATALFFSALYVGLMADAMGKGDT-------PDFFSYAGVSKLLSMQRVVLPAWIHYVVFDLWTGRWEVLDAGRR--GVPQILMAVPLFFTLMLGPSGLLLY 133          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A150GUE9_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GUE9_GONPE)

HSP 1 Score: 99.4 bits (246), Expect = 5.320e-22
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = 1
Query:    1 LFLSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQK 456
            L L  +D Q+F L N+V+PAW++L V PRW   + +  A  LL  ALY A +   V      G K  ++ F  L GV   L+++A  LP W HY AFDL+VG+ I  +++    +PQ ++   L  +   GP GLL Y+L+     +  KQK
Sbjct:    4 LGLPHTDAQLFDLINVVLPAWLLLAVAPRWRHTKTISAAAALLMSALYTATL-GTVMIAPPAGDKLEVKDFFNLEGVGRALSTKALVLPCWVHYAAFDLWVGRWIAGDSVE-RGVPQLLLIPCLFLTWFMGPAGLLAYWLVRMPFNKAGKQK 153          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A150GU38_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GU38_GONPE)

HSP 1 Score: 99.4 bits (246), Expect = 5.320e-22
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVA-RGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQK 456
            L R+DEQ+F L N+V+PAW++L   P W   + +  A  LL C+LYAAL+   +A R   GGL   +  F +  GV    + +AA L  W HY AFDL+VG+ +  +++    +PQ ++   L+ ++  GP GLL Y+L+     +  KQK
Sbjct:    6 LPRTDEQLFGLVNVVLPAWLLLAAAPAWRHTKTISAAAALLMCSLYAALLVTMMAVRPEGGGLD--VRDFFSHEGVFRTFSKKAAVLICWVHYAAFDLWVGRWMAADSVE-RGVPQLLLIPCLLIALFVGPAGLLAYWLVRTPFLKAGKQK 153          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A8J9RD65_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RD65_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.500e-21
Identity = 53/149 (35.57%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQ 453
            L  +D QIFQ  NLV+PAW++LI+ PRW+        T + +  LY  L    +A+  VG    + ++F T  GV+  L+S    LPAW HYVAFDLF  + ++++++   ++P  ++   L+ +M+ GP GLL YF++    A + ++
Sbjct:    6 LDLTDAQIFQGVNLVLPAWLLLILLPRWKFSHSFATFTAVGFSILYTLLFGTLLAQP-VGDF--SFDKFFTYEGVKDALSSPEVVLPAWVHYVAFDLFTAKWMVQDSIP-RSIPHLLLVPCLLLTMMLGPMGLLSYFVVRTITATVRRK 150          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A8IXY6_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8IXY6_CHLRE)

HSP 1 Score: 97.8 bits (242), Expect = 2.380e-21
Identity = 60/175 (34.29%), Postives = 87/175 (49.71%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQKTR*FQRLLGLPVSGGEIVKNCQRFK 531
            L  +D Q+F   N+V+PAW++L + PRW+    +V A  L    LY+A + + +      G     E F TL GV  LLA ++A LP W HY AFDL+VG+ I  + +    +PQ ++   L   M+ GP GL+ YF                   LL LP SGG+     ++ K
Sbjct:    6 LEFTDSQLFDTLNVVLPAWILLALLPRWKHTYTVVTAAALYTSLLYSACLVSMMIAPSEDGAPDFSEMF-TLEGVSKLLAKKSAALPCWTHYAAFDLWVGRWIATDAMD-RGVPQLLLIPCLFLCMMVGPIGLVAYF-------------------LLRLPFSGGKKATASRKSK 159          
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Match: A0A835YLE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.930e-21
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    7 LSRSDEQIFQLQNLVMPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKTMEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQPMV--AVVLVFSMLFGPTGLLLYFLLSRA-NAEISKQKTR 462
            L  SDEQ+F    LVMPAW +LI+ PR++  + +   T+  Y   Y  LM +    GG  G+K  +E F++L+GVR LL     TL AW HY+AFDLF    +   NL       P+V  A VL F+ + GP GL  + +L    NA   +Q+ R
Sbjct:    6 LQYSDEQLFGACQLVMPAWALLILAPRFKASQAVAGVTIGFYAIFYTLLMAHATTSGG--GMK--LEDFNSLAGVRGLLVHPDITLAAWVHYLAFDLFTALMVTRYNLSRGEATVPLVLMAPVLFFTCMAGPVGLCAFAVLHALFNAARGQQQQR 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9V7A6_9CHLO2.030e-2540.00Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A250XKW1_9CHLO1.690e-2339.44Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8J4AXJ2_9CHLO3.190e-2336.49Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A150GUA7_GONPE2.710e-2236.42Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
E1ZNY5_CHLVA4.780e-2241.61Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A150GUE9_GONPE5.320e-2237.50Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A150GU38_GONPE5.320e-2237.75Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J9RD65_9CHLO1.500e-2135.57Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A8IXY6_CHLRE2.380e-2134.29Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A835YLE3_9STRA2.930e-2139.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig78contigP-wetherbeei_contig78:12292..13589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3055.EDP03007
PFAMsDUF4281
Model size886
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2e-18
EggNOG OGs2E2D6@1|root,2S9M4@2759|Eukaryota,381A7@33090|Viridiplantae,34MSU@3041|Chlorophyta
Ec32 ortholog descriptionProtein of unknown function DUF4281
Ec32 orthologEc-16_004520.1
DescriptionDomain of unknown function (DUF4281)
Cds size414
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.3646674-UTR-P-wetherbeei_contig78:12291..123421683187001.3646674-UTR-P-wetherbeei_contig78:12291..12342Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig78 12292..12342 +
1683187001.4065602-UTR-P-wetherbeei_contig78:13168..135891683187001.4065602-UTR-P-wetherbeei_contig78:13168..13589Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig78 13169..13589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.3768585-CDS-P-wetherbeei_contig78:12342..123771683187001.3768585-CDS-P-wetherbeei_contig78:12342..12377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 12343..12377 +
1683187001.3887434-CDS-P-wetherbeei_contig78:12595..127921683187001.3887434-CDS-P-wetherbeei_contig78:12595..12792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 12596..12792 +
1683187001.3977566-CDS-P-wetherbeei_contig78:12986..131681683187001.3977566-CDS-P-wetherbeei_contig78:12986..13168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 12987..13168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig78.11.1prot_P-wetherbeei_contig78.11.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig78 12343..13168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig78.11.1

>prot_P-wetherbeei_contig78.11.1 ID=prot_P-wetherbeei_contig78.11.1|Name=mRNA_P-wetherbeei_contig78.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MPAWVVLIVFPRWERRRQLVQATVLLYCALYAALMWNDVARGGVGGLKKT
MEQFSTLSGVRSLLASQAATLPAWFHYVAFDLFVGQNILEENLRTNALPQ
PMVAVVLVFSMLFGPTGLLLYFLLSRANAEISKQKTR*
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mRNA from alignment at P-wetherbeei_contig78:12292..13589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig78.11.1 ID=mRNA_P-wetherbeei_contig78.11.1|Name=mRNA_P-wetherbeei_contig78.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-wetherbeei_contig78:12292..13589+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTTTCTGTCTCGCTCAGACGAGCAAATCTTCCAGCTGCAAAACCTGGT GATGCCTGCATGGGTTGTTCTCATCGTTTTCCCTCGGTGAGTGAGCACGT AGGTACTTCTCACCCCCTTGTTCCCACGGTAAGGGGAGAGTGAGCATGTA CGTCTGCTGACAGGGTGTTTCACACCTTAAGGATCGTGGGAAAGAAATTT TATTTTGATGAAAGCTCCTTACCCCTTAGTGGCGTCAGGATAGAGTCGCT CAACCGTCCTCCGGTTTGTCTTCCTGCTCGTCTCGCTCGTTTCGTACTGC GTAGGTGGGAGCGCCGCCGGCAGCTCGTCCAAGCCACGGTCCTCTTGTAC TGCGCCTTATACGCCGCGCTCATGTGGAACGACGTCGCGCGGGGCGGCGT CGGCGGGCTGAAAAAGACTATGGAGCAGTTCTCAACGCTCTCTGGCGTCC GCTCGCTGCTCGCCTCGCAGGCCGCCACGCTTCCAGCGTGGTTCCACTAC GGTAAGTAGTTGCTCTGTACTCCTGCCTGACGGCGGGCTGTGCTTTCGTG CGGCCTTGTGTTTTTCTCACATTGCACCTCCTGGCTTGGATAACACGCCC ACTTCCCCAAAAACCGTGCAACCGTCTGTTTCGGTTAGTGAAGCAACACA TCTTCCCCTCCTTTCTCTCGCCACGTTTCAAAAACACGCTTGCAGTGGCC TTCGATCTTTTCGTCGGACAAAACATTCTCGAAGAGAACCTGCGGACAAA CGCACTGCCGCAGCCGATGGTGGCGGTCGTACTCGTCTTTAGCATGCTCT TCGGGCCGACCGGCTTGCTGCTCTACTTCCTGCTCAGCCGCGCCAACGCC GAGATCTCCAAGCAGAAGACGCGCTGATTTCAGCGGCTTTTGGGTCTGCC GGTGTCGGGGGGAGAAATAGTGAAGAACTGCCAGCGGTTCAAACCGTGGG AGAAGGACAAAGACTCCGGCGGCTTGCTTCTTGCAATGCGCTGAAGGTCC GCGGCCGGCGGCGACGCGAGGGCGCCGCAGCAGCTGAGCGACGGCGCGGC CGCTTGTCTTGTGTACGCTGGATGGTCGGAGGTCGCTGGGATGTACGGAG CATGAAAGAGGGGAGTGAAGGGAAAGGAGCAGTTGCTGGGAGGTTGCTAG AGGATATCGCGAGCATCACGGTTAACAACTCGGCAACGGGGAAACTCCAC TAGAGAGAAAACACTAGTGACTGTGACGGTATTGACAGGAGCACAGCCGT TCCCGGTTTCGAAGGAATCTGTAAAGAAAGTAAACCGGCCTTTGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig78:12292..13589+

>mRNA_P-wetherbeei_contig78.11.1 ID=mRNA_P-wetherbeei_contig78.11.1|Name=mRNA_P-wetherbeei_contig78.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig78:12292..13589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCATGGGTTGTTCTCATCGTTTTCCCTCGGTGGGAGCGCCGCCG
GCAGCTCGTCCAAGCCACGGTCCTCTTGTACTGCGCCTTATACGCCGCGC
TCATGTGGAACGACGTCGCGCGGGGCGGCGTCGGCGGGCTGAAAAAGACT
ATGGAGCAGTTCTCAACGCTCTCTGGCGTCCGCTCGCTGCTCGCCTCGCA
GGCCGCCACGCTTCCAGCGTGGTTCCACTACGTGGCCTTCGATCTTTTCG
TCGGACAAAACATTCTCGAAGAGAACCTGCGGACAAACGCACTGCCGCAG
CCGATGGTGGCGGTCGTACTCGTCTTTAGCATGCTCTTCGGGCCGACCGG
CTTGCTGCTCTACTTCCTGCTCAGCCGCGCCAACGCCGAGATCTCCAAGC
AGAAGACGCGCTGA
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