mRNA_P-wetherbeei_contig78.10.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig78.10.4
Unique NamemRNA_P-wetherbeei_contig78.10.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig78.10.4 vs. uniprot
Match: A0A4D9CUI7_9STRA (F-box domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUI7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.520e-17
Identity = 83/277 (29.96%), Postives = 127/277 (45.85%), Query Frame = 1 
Query:  223 WRQALRVADHAFRELCVRELGSMLSNLSLPPFQDLSWQQLAMLAAATPRPLRLLLRQGTSALSNMAACPVKAA-------AAVAAPASESMLPEATF---MKVTLDICRKMSMPANRRWAELPAWQAYVCCTSAELAAAAAARVRLSAFVRETTAMCEVYEVWSGGFVMWQQVPWRRSAIEYASVVY-----------------------------PELLLGS------------EKSPPAFAQGDLELLEESMQSVVAEAMELFVKPLPGLSKTHW 900
            WR  L  +   + E+C     + L + + P ++  SW+ L +   A  RP+  +L +G  AL+++ A  VK+        A   AP  +     ATF   M+ T D+ RK+S+   +  A+  A +AY+  T   L A+A  R  +  FVR T A+   Y+VW+GGFV W  VPWRRSAI +   +Y                               L  GS            ++  P    G +E L+ +++S +AEA+ELFV P+PG+   HW
Sbjct:   44 WRSILDQSPSFYPEICRHHWAAPLCDPTSPSYKG-SWRLLFLSLVAVSRPIFEILNRGVLALTSLEAG-VKSGEGQDGEEALNEAPRPQIPWVRATFENFMRATYDLGRKLSL--KKLSAQSLALEAYLESTRRRLEASAFLRACVHDFVRHTEALAMHYDVWNGGFVEWPAVPWRRSAIAFLIDLYVTRAPSSSVPVSPSSHSPXXXXXXXXXXXXXLSTGSSELSRNNPVPACQQKAPLLPLGLVEALDSTIKSTIAEALELFVPPVPGIPAGHW 316
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig78.10.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9CUI7_9STRA1.520e-1729.96F-box domain-containing protein n=2 Tax=Monodopsid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig78contigP-wetherbeei_contig78:9547..12081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1788
Hectar predicted targeting categoryother localisation
Exons4
Cds size651
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig78.10.4prot_P-wetherbeei_contig78.10.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig78 10396..11793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.2638876-UTR-P-wetherbeei_contig78:9546..103951683187001.2638876-UTR-P-wetherbeei_contig78:9546..10395Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig78 9547..10395 -
1683187001.3217719-UTR-P-wetherbeei_contig78:11793..120811683187001.3217719-UTR-P-wetherbeei_contig78:11793..12081Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig78 11794..12081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187001.2747948-CDS-P-wetherbeei_contig78:10395..105121683187001.2747948-CDS-P-wetherbeei_contig78:10395..10512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 10396..10512 -
1683187001.2840762-CDS-P-wetherbeei_contig78:10715..108291683187001.2840762-CDS-P-wetherbeei_contig78:10715..10829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 10716..10829 -
1683187001.2934442-CDS-P-wetherbeei_contig78:11066..112771683187001.2934442-CDS-P-wetherbeei_contig78:11066..11277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 11067..11277 -
1683187001.303891-CDS-P-wetherbeei_contig78:11584..117931683187001.303891-CDS-P-wetherbeei_contig78:11584..11793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig78 11585..11793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig78.10.4

>prot_P-wetherbeei_contig78.10.4 ID=prot_P-wetherbeei_contig78.10.4|Name=mRNA_P-wetherbeei_contig78.10.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
MLSNLSLPPFQDLSWQQLAMLAAATPRPLRLLLRQGTSALSNMAACPVKA
AAAVAAPASESMLPEATFMKVTLDICRKMSMPANRRWAELPAWQAYVCCT
SAELAAAAAARVRLSAFVRETTAMCEVYEVWSGGFVMWQQVPWRRSAIEY
ASVVYPELLLGSEKSPPAFAQGDLELLEESMQSVVAEAMELFVKPLPGLS
KTHWWWWVIPGPPGHH*
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mRNA from alignment at P-wetherbeei_contig78:9547..12081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig78.10.4 ID=mRNA_P-wetherbeei_contig78.10.4|Name=mRNA_P-wetherbeei_contig78.10.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2535bp|location=Sequence derived from alignment at P-wetherbeei_contig78:9547..12081- (Phaeothamnion wetherbeei SAG_119_79)
GATCCTTTCGAAAATGTCCCAGAGCCTTGTTCAAATCCTCCATCTTGTCG
TGCCTTGCCTTCCACCAAAGGAATCCTGTTCGCTCCGGTAGGCGCCACAC
ACCCTTTCGCACTCTAATCCTTTTCTGGAACTGTAATTTGCACAGCTTGA
CATCTTTCCCATAGAGACTAAAATACGGAACACCCACCCCTGCAATCTTA
CCACAGGCTCGCGAGCTGGGAGTGGAGGCAGGCTTTGCGGGTCGCCGACC
ATGCATTTCGAGAGCTGTGCGTCCGTGAGCTGGGCTCGATGCTCTCGAAC
CTCTCGCTGCCGCCTTTCCAAGACCTATCATGGCAGCAGCTCGCGATGTT
AGCGGCGGCGACGCCGCGGCCTCTTCGGTTGCTGCTCCGGCAGGGCACGT
CAGCGCTATCGAACATGGCTGCTTGTCCGGTGAAGGCGGCGGCGGCAGTG
GCCGCCCCAGCATCGGAGTCGATGCTTCCGGAGGCAACATTCATGAAGTG
AGAAATATATGGCGACCTCCTCCTACGTTTTTGATGGTAGGGGACCTGAA
AGGCAACATTGTCTGGAGGGTCAAACATGCACATGAAGGCCTCGGGTCTG
TTTGCCGTACGCTCTTTCTATCTTGCAATTTATATCTTTTGAATCGTGTT
AACTTCGTTTTATTTTAAAAGCTGGGTCGGTTTTTGTCTACTCCAGTTCC
GCCAGCGCATCCAAGCAGGTTCGTTAACCCTCGCAACCTGTGTTCCGGTT
TTCACCACAATCACCCCGTGCATCGCTGGGATCGGCACCACCCGGCGCGA
AAAGAGTAACGCTCGACATCTGCCGAAAAATGTCGATGCCGGCGAATCGG
CGCTGGGCGGAACTTCCCGCTTGGCAGGCCTACGTGTGTTGCACATCGGC
AGAGCTGGCGGCGGCGGCGGCGGCGCGGGTGCGGCTGTCGGCCTTCGTGC
GCGAGACGACCGCCATGTGTGAAGTCTACGAAGTCTGGAGCGGCGGCTTT
GTCATGTGGCAGCAGGTAAGAGGATATGCATAATGGCGCACAGGGTGGTG
GGCGCCCGGATCGGCGAAGCGCAATTTCAGCGCTTGTTACGGCCGGTCAT
CTGCTCTCTACTCATCTCCATCTGCCTCGTCCTTGCTCTCCGCGGCCGCT
TATGGTTTGCGATATGCTTGAAGCATTCTTCTCGGCTTGTGCACTGCGTT
TGCGCAATCTGCATGTGGGACCGGTCCACTTGCTACACACACCCCTTGCC
AGGTGCCGTGGCGGCGCAGCGCCATCGAGTATGCTTCGGTCGTCTATCCG
GAGCTGCTTTTGGGCTCGGAGAAGTCGCCGCCGGCCTTCGCGCAGGGCGA
CCTGGAATTGCTAGAGGTCACCGCCGCTTGATATCACTTGTTGGGTCGCT
CCAATAACCGTGACCGCATGACATGCAGTTTGATGCCTTCCTCTTCCCTG
GCGATGCGCGGTTGCAAACTCTTTCGCTGGCGGCATGCTTCCTGCCTCTC
TCGCTCGCTACATATGCACCGAATGCTTCCGGCTTGCTGCCCCTCTCTCT
TCCGTGCGTTGCGCTGCAGGAGTCCATGCAAAGCGTGGTCGCCGAAGCGA
TGGAATTGTTCGTGAAACCTCTTCCAGGGCTGTCGAAGACGCACTGGTGG
TGGTGGGTCATTCCGGGCCCGCCAGGCCACCACTAGCCGCCCACCCAACA
TCTGCTTTCCCAATCGGCAGTCCACGGCTTTGGAGTGCTGATCCTGTGTG
CCGGCCATATCGCTGCCGCGGATGCTGGGAGGCGGAGCTGTGGGACCTGA
GACGGCCGCGGCGGCGGCAGCGATGGTGACAGTCGGTGGCGACGGCAGCG
TTGATGGCAACGGCAGTGGCATCAACGGCAGCCACCTCGTCAGCAGAAAA
CGGCGACAACAGCACAGCGGCGGCGATGGTAGCGGCGGCGATGGTAGCGG
CGGTGGAGGCAGCGGTAACGCCAGCTGCGGCCGCTTCCGCCCCAGGAGCA
GCGCAGACCGTGCTTAACCTGTGGCGGCGATTGCCGCGGCAATGGAAGGA
GGGACGAGCTGTGGAATCCGACGCAGCAGTTTTTTGAAACGGCAACGGCT
GCGCGACAGTAGTGGCTGGTGTGGAGGGAATTTCCATAGTTTTGACACAA
AGTGGCACGTAAGATGCGTGCCCCCGTTGGCAAGGAGCGAGCAACGGCAC
TGCACCGGCAACAATTCGTCGCCTTGAAAGCTGATGCGGTGGCCGGCCGC
GGCGACAGCTGGCGTCGCTCTGCCCGCCGCATCGATACAATTAGGGCTGA
GATGGGGGGTGGCACGAAAAGGCACACGCCAACCGAACAGGAACTGCTTG
CGGCAGTTTCGGGAAAATCTTGGGAAGCAGGAAATTAGCCGGGAGGCGGG
AATTTTTGGAAAAGGAATGTGCAAAAAATGGATAGGCTGCAAATAGAAAG
CTGGATGGGATCAAAACTAACAATTTCGCAAAGGCAACCGCCCCAATTAC
GATTCGAATTGAAGGAATGCGCAATAAAAGCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig78:9547..12081-

>mRNA_P-wetherbeei_contig78.10.4 ID=mRNA_P-wetherbeei_contig78.10.4|Name=mRNA_P-wetherbeei_contig78.10.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig78:9547..12081- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTCGAACCTCTCGCTGCCGCCTTTCCAAGACCTATCATGGCAGCA
GCTCGCGATGTTAGCGGCGGCGACGCCGCGGCCTCTTCGGTTGCTGCTCC
GGCAGGGCACGTCAGCGCTATCGAACATGGCTGCTTGTCCGGTGAAGGCG
GCGGCGGCAGTGGCCGCCCCAGCATCGGAGTCGATGCTTCCGGAGGCAAC
ATTCATGAAAGTAACGCTCGACATCTGCCGAAAAATGTCGATGCCGGCGA
ATCGGCGCTGGGCGGAACTTCCCGCTTGGCAGGCCTACGTGTGTTGCACA
TCGGCAGAGCTGGCGGCGGCGGCGGCGGCGCGGGTGCGGCTGTCGGCCTT
CGTGCGCGAGACGACCGCCATGTGTGAAGTCTACGAAGTCTGGAGCGGCG
GCTTTGTCATGTGGCAGCAGGTGCCGTGGCGGCGCAGCGCCATCGAGTAT
GCTTCGGTCGTCTATCCGGAGCTGCTTTTGGGCTCGGAGAAGTCGCCGCC
GGCCTTCGCGCAGGGCGACCTGGAATTGCTAGAGGAGTCCATGCAAAGCG
TGGTCGCCGAAGCGATGGAATTGTTCGTGAAACCTCTTCCAGGGCTGTCG
AAGACGCACTGGTGGTGGTGGGTCATTCCGGGCCCGCCAGGCCACCACTA
G
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