mRNA_P-wetherbeei_contig7776.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7776.4.1
Unique NamemRNA_P-wetherbeei_contig7776.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7776.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7776contigP-wetherbeei_contig7776:1313..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.2054605-UTR-P-wetherbeei_contig7776:1312..13141683187000.2054605-UTR-P-wetherbeei_contig7776:1312..1314Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7776 1313..1314 -
1683187000.2503831-UTR-P-wetherbeei_contig7776:1466..15131683187000.2503831-UTR-P-wetherbeei_contig7776:1466..1513Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7776 1467..1513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187000.2166142-CDS-P-wetherbeei_contig7776:1314..13911683187000.2166142-CDS-P-wetherbeei_contig7776:1314..1391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7776 1315..1391 -
1683187000.23228-CDS-P-wetherbeei_contig7776:1423..14661683187000.23228-CDS-P-wetherbeei_contig7776:1423..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7776 1424..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7776.4.1prot_P-wetherbeei_contig7776.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7776 1315..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7776.4.1

>prot_P-wetherbeei_contig7776.4.1 ID=prot_P-wetherbeei_contig7776.4.1|Name=mRNA_P-wetherbeei_contig7776.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
MKDRGLRRGGECRAGNRAVRHLEPVDVAWLEPSPQRNRR*
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mRNA from alignment at P-wetherbeei_contig7776:1313..1513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7776.4.1 ID=mRNA_P-wetherbeei_contig7776.4.1|Name=mRNA_P-wetherbeei_contig7776.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig7776:1313..1513- (Phaeothamnion wetherbeei SAG_119_79)
AAGCGGGACATTCGTTAGTGCTAACCGGGCAAATAAGCCGTCCCCACATG
AAGGATAGGGGACTCCGTCGTGGCGGTGAATGCCGGGCCGGCACGGACTG
CCGTTTCCAGTGACCGGGCTAGGAAACCGCGCCGTACGGCATCTGGAGCC
AGTGGATGTAGCGTGGCTGGAGCCGTCCCCCCAGCGTAACCGCCGCTAGC
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7776:1313..1513-

>mRNA_P-wetherbeei_contig7776.4.1 ID=mRNA_P-wetherbeei_contig7776.4.1|Name=mRNA_P-wetherbeei_contig7776.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig7776:1313..1513- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGATAGGGGACTCCGTCGTGGCGGTGAATGCCGGGCCGGAAACCG
CGCCGTACGGCATCTGGAGCCAGTGGATGTAGCGTGGCTGGAGCCGTCCC
CCCAGCGTAACCGCCGCTAG
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