mRNA_P-wetherbeei_contig7774.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA) HSP 1 Score: 162 bits (411), Expect = 2.280e-42 Identity = 94/221 (42.53%), Postives = 131/221 (59.28%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGLQ 663
MKDLG +LG+ + +D +AG + LSQ Y+ +L RF M D V TP S+ + P + E +M+ P VG+++Y V TRPD+ V ++R +HNP W + W+LRYLKG+ + GL+F R + + PG +GY DAD+ D+DRRRS+ AY+F G+AISW S +Q A ST EAEY+AA V+ A+WLR L LGLQ
Sbjct: 696 MKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNTPLAAHFK-LSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVFDR----QRSDPGGVVGYVDADYGGDLDRRRSLSAYIFTLCGSAISWYSSLQAIAALSTTEAEYIAATEGVKEAIWLRGLVAELGLQ 911
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: Q153Y3_PRUAV (Polyprotein (Fragment) n=1 Tax=Prunus avium TaxID=42229 RepID=Q153Y3_PRUAV) HSP 1 Score: 153 bits (387), Expect = 2.340e-42 Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSD-AWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGLQ 663
MKDLG +LG+ +++D G I L Q Y+ +L RF M++ + PV TP P SA+ P T E+ MA P VG+++Y V TRPDI V ++R +HNP W A W+LRY+ GT + GLLF + + +GY D+D+A D+D+RRS +VF +G +SWRS +Q A ST EAEY+A A++ A+WL+ L LG+Q
Sbjct: 28 MKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFK-LSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCV----VGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQ 244
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2N9EIR8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EIR8_FAGSY) HSP 1 Score: 157 bits (398), Expect = 1.220e-40 Identity = 95/222 (42.79%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGL 660
MKDLG +LG+ +++D +A + LSQ +YI +L +F M DA PV TP S+++ P E M+ P VG ++Y V TRPD+ V +++R + NPR W A W+ RYLKGT E G+LFSR PG + +GY DAD+A ++D RRS YVF SG I W+S +Q A ST EAEY+A A A + ALWL+ L + LGL
Sbjct: 866 MKDLGAAKKILGMEIRRDREARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSSSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPRREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAIAEAAKEALWLKGLVKELGL 1079
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2N9H0T6_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H0T6_FAGSY) HSP 1 Score: 157 bits (396), Expect = 2.050e-40 Identity = 95/222 (42.79%), Postives = 127/222 (57.21%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGL 660
MKDLG +LG+ + +D A + LSQ +YI +L +F M DA PV TP S ++ P E M+ P +VG ++Y V TRPD+ V +++R + NPR W A W+ RYLKGT E G+LFSR PG + +GY DAD+A ++D RRS YVF SG I W+S +Q A ST EAEY+A A A + ALWL+ L + LGL
Sbjct: 617 MKDLGAAKKILGMEIHRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASVVGCLMYAMVCTRPDLAHAVSTVSRYMANPRREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL 830
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2N9GRB2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRB2_FAGSY) HSP 1 Score: 155 bits (391), Expect = 3.930e-40 Identity = 94/222 (42.34%), Postives = 126/222 (56.76%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGL 660
MKDLG +LG+ + +D +A + LSQ +YI +L +F M DA PV TP S ++ P E M+ P VG ++Y V TRPD+ V +++R + NP W A W+ RYLKGT E G+LFSR PG + +GY DAD+A ++D RRS YVF SG I W+S +Q A ST EAEY+A A A + ALWL+ L + LGL
Sbjct: 367 MKDLGAAKKILGMEIHRDRRARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL 580
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2N9EPH6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EPH6_FAGSY) HSP 1 Score: 156 bits (394), Expect = 4.270e-40 Identity = 93/220 (42.27%), Postives = 125/220 (56.82%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGL 660
MKDLG +LGI +++D +A + LSQ +YI +L +F M DA PV TP S ++ P E M+ P VG ++Y V TRPD+ V +++R + NP W A W+ RYLKGT E G+LFSR + +GY DAD+A ++D RRS YVF SG I W+S +Q A ST EAEY+A A A + ALWL+ L + LGL
Sbjct: 1071 MKDLGAAKKILGIEIRRDREARKLWLSQKNYIKKVLEKFSMLDAKPVSTPLANHFR-LSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQLGTN-----SVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL 1284
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: UPI00092EAAE8 (uncharacterized protein LOC109329342 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EAAE8) HSP 1 Score: 155 bits (392), Expect = 6.300e-40 Identity = 90/222 (40.54%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGLQV 666
MKDLG +LG+ +Q+D K GT+ LSQ YI+ +L RF M +A PV TP S A P T +E +M+ P VG+++Y + TRPDI V ++R + +P W A W++RYLKGT + GLL+ + IGY D+D+A D+D+RRS+ YVF G +SW++ +Q A ST EAEY+A AV+ A+W + L LG+Q+
Sbjct: 297 MKDLGAGRKILGMEIQRDRKEGTLFLSQKKYIEKVLERFGMQNAKPVTTPLASHFK-LSMALCPQTESENEEMSSVPYASAVGSLMYAMICTRPDIAQAVSVVSRYMASPGKVHWKAVKWIMRYLKGTMDIGLLYGKV----KGVGSKVIGYVDSDYAGDLDKRRSLTGYVFTLCGCTVSWKATLQSIVALSTTEAEYIAVTEAVKEAIWEKGLIEELGIQL 513
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A4Y2SE01_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2SE01_ARAVE) HSP 1 Score: 152 bits (384), Expect = 6.670e-40 Identity = 90/213 (42.25%), Postives = 126/213 (59.15%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRR 639
+KDLG++ LGI Q++K G I +SQ YI+++L +F M DA V+TP P + P T AE A+M+ P R L+G+++YLA+ TRPDI V L++ NP +P W AA +L+YLKGT+ +GL F T +GYADADWA DI R+S + + AISW SK Q C A S+ EAEY+A + + ++LRR
Sbjct: 205 IKDLGKLSFCLGIEFSQNVKNGQITMSQSKYIENVLEKFNMQDAKTVKTPLDPSVK-LTKEMCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRP-------TKKPLVGYADADWASDITDRKSYSGCMLKFADGAISWESKKQHCVALSSTEAEYIALSECAKEIVYLRR 409
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: UPI00092EA0BB (uncharacterized protein LOC109342419 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EA0BB) HSP 1 Score: 155 bits (392), Expect = 7.670e-40 Identity = 90/222 (40.54%), Postives = 129/222 (58.11%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPGAAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGLQV 666
MKDLG +LG+ +Q+D K GT+ LSQ YI+ +L RF M +A PV TP S A P T +E +M+ P VG+++Y + TRPDI V ++R + +P W A W++RYLKGT + GLL+ + IGY D+D+A D+D+RRS+ YVF G +SW++ +Q A ST EAEY+A AV+ A+W + L LG+Q+
Sbjct: 826 MKDLGAGRKILGMEIQRDRKEGTLFLSQKKYIEKVLERFGMQNAKPVTTPLASHFK-LSMALCPQTESENEEMSSVPYASAVGSLMYAMICTRPDIAQAVSVVSRYMASPGKVHWKAVKWIMRYLKGTMDIGLLYGKV----KGVGSKVIGYVDSDYAGDLDKRRSLTGYVFTLCGCTVSWKATLQSIVALSTTEAEYIAVTEAVKEAIWEKGLIEELGIQL 1042
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Match: A0A2N9GZN8_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GZN8_FAGSY) HSP 1 Score: 155 bits (392), Expect = 7.780e-40 Identity = 94/222 (42.34%), Postives = 128/222 (57.66%), Query Frame = 1
Query: 1 MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPSCPGAPPRSAARGPATTAEAAKMAGNPLRELVGAVLYLAVTTRPDIFDEVRSLTRTVHNPRLPDWLAALWLLRYLKGTREKGLLFSRSAAARMATPG--AAIGYADADWARDIDRRRSVGAYVFLRSGAAISWRSKMQDCTAASTCEAEYVAAAYAVQHALWLRRLARGLGL 660
MKDLG V +LG+ +++D + + LSQ +YI +L +F M DA PV TP S+++ P E M+ P VG ++Y V TRPD+ V +++R + NP W A W+ RYLKGT E G+LFSR PG + +GY DAD+A ++D RRS YVF SG I W+S +Q A ST EAEY+A A A + ALWL+ L + LGL
Sbjct: 909 MKDLGAVKKILGMEIRRDRETRKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFR-LSSSQCPKNEEEIENMSKVPYTSAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQ-------PGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGL 1122 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7774.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7774.3.1 >prot_P-wetherbeei_contig7774.3.1 ID=prot_P-wetherbeei_contig7774.3.1|Name=mRNA_P-wetherbeei_contig7774.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp MKDLGRVHTLLGILVQQDLKAGTIRLSQPHYIDDLLARFRMSDAWPVQTPback to top mRNA from alignment at P-wetherbeei_contig7774:459..1130+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7774.3.1 ID=mRNA_P-wetherbeei_contig7774.3.1|Name=mRNA_P-wetherbeei_contig7774.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:459..1130+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7774:459..1130+ >mRNA_P-wetherbeei_contig7774.3.1 ID=mRNA_P-wetherbeei_contig7774.3.1|Name=mRNA_P-wetherbeei_contig7774.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig7774:459..1130+ (Phaeothamnion wetherbeei SAG_119_79)back to top |