mRNA_P-wetherbeei_contig7760.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7760.1.1
Unique NamemRNA_P-wetherbeei_contig7760.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 3.940e-99
Identity = 153/234 (65.38%), Postives = 185/234 (79.06%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPVKRRGGE 1193
            V T   K MEL+A S TSYTNTKNCFCVRT E+VWFLL KDE ++NKWMT INAQ+H L++K Y VPE N+W++G  GRFFY+MV+ A+PQWIRTYPE  APRTGDGLFP EVIEV Q L      FLRI +DRGWT+ ++  D + LFEEI GE+V D ++YGF  SA++P+P+L+GPGL+SQQTGEAL+P GERAEA+ERFTP  G   +GVVFIKLKD RGWVPV++R G 
Sbjct: 1186 VGTNKNKGMELTAHSITSYTNTKNCFCVRTGEAVWFLLGKDELALNKWMTAINAQIHGLFIKLYNVPEDNYWSQGTNGRFFYRMVDDALPQWIRTYPEQAAPRTGDGLFPGEVIEVAQTLTNKETEFLRIGNDRGWTYAKNPADGSTLFEEIDGEVVPDTRNYGFPPSAKDPIPLLFGPGLESQQTGEALIP-GERAEAMERFTPGDG---SGVVFIKLKDGRGWVPVRKRNGS 1415          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.140e-71
Identity = 122/228 (53.51%), Postives = 158/228 (69.30%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPV 1175
            V TR  K MEL   ST SYTN  NCF VRT E  W LLAKDE+SM KW+T INA +H L++K + VPE N+ ++G KG+FFY+MV    PQWIR++PE +APRTG+GLFP EV+E+VQVL  N   +LRIA+DRGWT   +  D +VLFEE +G+  ED   Y    +++  VPIL+GP ++SQ TG+AL P G+ AEA  RF P+    + G+ FIKL   +GWVP+
Sbjct: 1231 VGTRKNKRMELQPDSTASYTNVPNCFSVRTGEENWILLAKDEDSMEKWITAINAVIHGLFIKRHNVPEDNYDSQGLKGQFFYRMVPNVQPQWIRSFPEEEAPRTGEGLFPGEVVEIVQVLSNNNKVYLRIANDRGWTVAANPEDGSVLFEESNGDFTEDPMDY---CTSKNEVPILFGPSMESQMTGDALAP-GQIAEATGRFVPA---DEGGLAFIKLAGDKGWVPM 1451          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.160e-69
Identity = 119/232 (51.29%), Postives = 161/232 (69.40%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLE-RNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPVKRR 1184
            V TR +K++EL   STT++TNTK CFCVRT ++ WFL+A+D + M +WMT INAQV+ L+LK++T P  N+W +G KGRFFY M E    QWI T+PE  APRTG+G+FP EV+EVVQ+L       +LR+AD+RGWT  RHS D     E+++G+IVED + Y    +  +   +L GP   S+ TGE L P G+R +A+E+FTP+    D+GVVFIKL + RGWVP+  R
Sbjct: 1239 VGTRKRKTLELKPHSTTAFTNTKCCFCVRTGQNAWFLIAQDHDQMTQWMTAINAQVYSLFLKNFTPPADNYWGQGTKGRFFYGMPENGASQWIYTHPEEGAPRTGEGVFPMEVVEVVQLLPVGEDHLWLRLADERGWTCGRHSKDGEPCLEQVAGDIVEDTRVYELPRNQEQGTHVLCGPATASEVTGEVLDP-GDRVQAVEKFTPAGA--DSGVVFIKLAEGRGWVPLNIR 1467          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D7FJU8_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU8_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 4.790e-69
Identity = 117/225 (52.00%), Postives = 160/225 (71.11%), Query Frame = 3
Query:  516 MELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPVKRRGG 1190
            M+L++++ TSYTNTKNCFCVRT++  WFLLA+  + M +WMT IN +   ++ + + V + ++  +G +GRFFY+MVE ++PQWI T+P   APRTGDGLFP EV+EV QVL    VTFLR+A+DRGWTF R   D +VLFE+++G + ED + Y F   A   VPIL+GPGL +Q TG  + P GER  A ERFTP     ++ VVF+KL+D RGW+P+K + G
Sbjct: 1115 MKLTSATITSYTNTKNCFCVRTDDVSWFLLARSLDDMKRWMTAINLRARHIFQREHGVHD-DYMGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLRTQATGVMVRP-GERVRASERFTPL---DNSSVVFVKLQDGRGWMPLKSQHG 1334          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: A0A6H5LIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIB2_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 2.850e-68
Identity = 117/230 (50.87%), Postives = 161/230 (70.00%), Query Frame = 3
Query:  501 RHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPVKRRGG 1190
            +  + M+L++++ TSYTNTKNCFCVRT+E  WFLLA+  + M +WM+ IN +   ++ + + V + ++  +G +GRFFY+MVE ++PQWI T+P   APRTGDGLFP EV+EV QVL    VTFLR+A+DRGWTF R   D +VLFE+++G + ED + Y F   A   VPIL+GPGL +Q TG  + P GER  A ERFTP     ++ VVF+KL+D RGW+P+K   G
Sbjct: 2365 QQSEDMKLTSATITSYTNTKNCFCVRTDEVSWFLLARSLDDMKRWMSAINLRARHIFQREHGVHD-DYAGQGRRGRFFYRMVEGSVPQWILTHPMTKAPRTGDGLFPGEVVEVTQVLSSEDVTFLRLANDRGWTFARSPADGSVLFEDLAGGVAEDTEEYTFPPGASGMVPILHGPGLKTQATGVFVRP-GERVRASERFTPL---DNSKVVFVKLQDGRGWMPLKSEHG 2589          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: A0A6H5JKN0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN0_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 2.370e-57
Identity = 104/236 (44.07%), Postives = 143/236 (60.59%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTR--HSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDA-GVVFIKLKDMRGWVPVKRRGG 1190
            V T+  K+MEL A S T   N  N F VRT  + W LLA+ +  M  WM  I  Q+H L+++ Y VP  ++ ++G  G+ FYKMV    PQWIRT+P   AP TGDGLF  E IEV QVLE  GV+FLR+A+DRGW   +   + D T LF ++SGE+  + + +     A +P  +L+GP L+SQ+ G  LMP G+    ++R+TP+PG     G  F+KLK   GWVP+ +  G
Sbjct:  539 VGTKKHKTMELKADSVTRPANQINTFGVRTGTTEWLLLARSKNEMKAWMGAIKDQIHALFIREYNVPGDDYQSQGAWGQCFYKMVAGVRPQWIRTFPVPQAPHTGDGLFEGETIEVTQVLENEGVSFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHIVPMIANQPAVVLFGPSLESQEMGATLMP-GDIVRVVQRYTPAPGVEKRDGQTFVKLKKTGGWVPIMKSNG 773          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.740e-57
Identity = 104/236 (44.07%), Postives = 144/236 (61.02%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTR--HSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDA-GVVFIKLKDMRGWVPVKRRGG 1190
            V T+  K+MEL A S T  TN  N F VRT  + W LLA+ ++ M  WM  I  Q+H L+++ Y VP  ++ ++G  G+ FYKM     PQWIRT+P   AP TGDGLF  E+IEV QVLE  GV FLR+A+DRGW   +   + D T LF ++SGE+  + + +     A +P  +L+GP L+SQ+TG  LMP G+    ++R+T +PG     G  F+KLK   GWVP+ +  G
Sbjct: 1163 VGTKKHKTMELKADSVTRPTNQINTFGVRTGTTEWLLLARSKKEMKAWMGAITDQIHALFIREYNVPGDDYQSQGTWGQCFYKMAAGVRPQWIRTFPVPQAPHTGDGLFEGEIIEVTQVLENEGVKFLRMANDRGWASAQDIEAGDGTALFTKVSGELTTETREHNVPMIANQPAVVLFGPSLESQETGATLMP-GDSVRVVQRYTSAPGVEKRDGQAFVKLKKTGGWVPIMKSNG 1397          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: A0A836C8E2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.840e-55
Identity = 112/276 (40.58%), Postives = 157/276 (56.88%), Query Frame = 3
Query:  507 KKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLK-------------------SYTVPEGNFWN-EGHKGRF-FYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLE-RNGVTFLRIADDRGWTFTRHSTD-----------------------------NTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPSPGPGDAGVVFIKLKDMRGWVPVKR 1181
            KK++ ++++S TS TN K+CFCV+T + +WFLLAKD+   +KWMT +NA ++ LY++                   SY  P+ N+W  EG      F++ +E + PQW+R +PE DAPRTGDG+ P EV+EV Q +E R+G  FLR+AD+RGW   R   D                             +T LFE++ G+   DNK YGF     +PVPI  GPGL S+ TG++L P G + +A  RF P      +G++FIKL D RGWVPV+R
Sbjct: 1421 KKTLPITSTSVTSATNLKDCFCVKTGDELWFLLAKDDAEKDKWMTAVNALIYALYVQRIAXXXXXXXXXXXXXXXXSYRPPQDNYWEAEGATNMHGFFRAIEASTPQWVRAFPELDAPRTGDGVVPGEVVEVEQAIEKRSGAVFLRLADERGWVLLRSPHDMFXXXXXXXXXXXXXXXXGGCVXXXXXXRSTALFEQLRGDATVDNKLYGFLDPKMQPVPIYAGPGLKSKPTGDSLTP-GCKVQAAMRFLPY---DLSGMMFIKLADGRGWVPVRR 1692          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.980e-50
Identity = 93/170 (54.71%), Postives = 115/170 (67.65%), Query Frame = 3
Query:  492 VNTRHKKSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGDGLFPSEVIEVVQVL--ERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSS 995
            V T   K MEL+  ST S+  TKNCFCVRT ++ WFL+A+D  SMN+WMT INA++H L++K Y VPE N+W++G +GRFFY+M   A PQWI TYPE  APRTGDGLF  +VI+VVQVL  +  G  FLRIADDRGW   R   DNTVL    +       +S  F S+
Sbjct: 1194 VGTTPNKEMELTGHSTASFATTKNCFCVRTEDAAWFLMARDLGSMNEWMTAINAEIHRLFVKLYDVPEDNYWSQGLQGRFFYRMAAGARPQWILTYPEQAAPRTGDGLFEGDVIDVVQVLTHKETGKVFLRIADDRGWAQRRDPVDNTVLSMRSTATSPRIRRSISFHST 1363          
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Match: A0A7S0SRW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRW0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.350e-29
Identity = 72/243 (29.63%), Postives = 124/243 (51.03%), Query Frame = 3
Query:  390 SFILKSRVVSPVGSLFTHGSSRLLARSISIFSFQVNTRHK---KSMELSASSTTSYTNTKNCFCVRTNESV---------WFLLAKDEESMNKWMTGINAQVHELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAM-----PQWIRTYPEHDAPRTGDGLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEIVEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMP 1067
            S I+KS  +     L      R      +I ++  ++ +K   KS+EL  +S  +YT+ +NCFC++  E           W+LLA   + M +W+  INA +H+ Y+    +   +++NEG     F+K+          P  I++ P  DAP TG+GL P E +E+VQ ++++  +FLR+ADDRGW F +H      L +   G+ +E +K   + +S    + +  GP +DS++   +  P
Sbjct:  255 SSIVKSGYLMKQSKLLGRWKRRYFVLDKNILTYYDSSEYKIDGKSIELQGNSIITYTSKENCFCIKIIEDAELDNKAIDDWYLLANSNKEMEEWIMMINAHIHDEYILGNNIQSIDYFNEGELQTSFWKVPVPTSGINRHPVSIKSLPFIDAPNTGEGLNPGETVEIVQSIQKDDNSFLRLADDRGWIFEKHPKSKYALIQPFPGDFIEIDKDITYDNS----IHVYTGPSIDSEEIKTSYKP 493          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7760.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPQ0_ECTSI3.940e-9965.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMS5_ECTSI1.140e-7153.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Q7_ECTSI1.160e-6951.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU8_ECTSI4.790e-6952.00PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5LIB2_9PHAE2.850e-6850.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKN0_9PHAE2.370e-5744.07PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMW4_ECTSI2.740e-5744.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8E2_9STRA3.840e-5540.58P-loop containing nucleoside triphosphate hydrolas... [more]
D8LHQ0_ECTSI3.980e-5054.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0SRW0_9STRA5.350e-2929.63Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7760contigP-wetherbeei_contig7760:548..2724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPQ0
PFAMsMyosin_head,PH
Model size1205
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons4
Evalue8.76e-102
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-10_000540.1
Descriptionmotor activity
Cds size846
COG categoryZ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.5731514-UTR-P-wetherbeei_contig7760:547..9061683186999.5731514-UTR-P-wetherbeei_contig7760:547..906Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7760 548..906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.5849366-CDS-P-wetherbeei_contig7760:906..12031683186999.5849366-CDS-P-wetherbeei_contig7760:906..1203Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7760 907..1203 +
1683186999.597228-CDS-P-wetherbeei_contig7760:1522..17111683186999.597228-CDS-P-wetherbeei_contig7760:1522..1711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7760 1523..1711 +
1683186999.6079764-CDS-P-wetherbeei_contig7760:1973..21961683186999.6079764-CDS-P-wetherbeei_contig7760:1973..2196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7760 1974..2196 +
1683186999.6172676-CDS-P-wetherbeei_contig7760:2587..27241683186999.6172676-CDS-P-wetherbeei_contig7760:2587..2724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7760 2588..2724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7760.1.1prot_P-wetherbeei_contig7760.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7760 907..2724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7760.1.1

>prot_P-wetherbeei_contig7760.1.1 ID=prot_P-wetherbeei_contig7760.1.1|Name=mRNA_P-wetherbeei_contig7760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MRVKTRQVFHSFILKSRVVSPVGSLFTHGSSRLLARSISIFSFQVNTRHK
KSMELSASSTTSYTNTKNCFCVRTNESVWFLLAKDEESMNKWMTGINAQV
HELYLKSYTVPEGNFWNEGHKGRFFYKMVEKAMPQWIRTYPEHDAPRTGD
GLFPSEVIEVVQVLERNGVTFLRIADDRGWTFTRHSTDNTVLFEEISGEI
VEDNKSYGFGSSAREPVPILYGPGLDSQQTGEALMPAGERAEAIERFTPS
PGPGDAGVVFIKLKDMRGWVPVKRRGGELHC*
back to top

mRNA from alignment at P-wetherbeei_contig7760:548..2724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7760.1.1 ID=mRNA_P-wetherbeei_contig7760.1.1|Name=mRNA_P-wetherbeei_contig7760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2177bp|location=Sequence derived from alignment at P-wetherbeei_contig7760:548..2724+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGAGCAAGTATCTGTCGCGCTGGAAGCCGCGCTTCTTCGTGCTGGAC GACGGATACCTCGAGTACTACGAGAAGAAGAGCCAGGTACTGTTTTATTT TGTTCTGTTTCTCTCAGAAGTTTTGCTTCTTCTTTTTTGTGTTCTTTTCG TTCTCATTCTCTTCTTGTTGCTGTTTTCTTTGTCAGCCCTTCCCTGTTTG TTGTACGACGCTTCTTCAAGAAGATGATAGACTGTGAGATTAATAGCTTC TGAAGGAGCTGATGTCCTTCATTCCTGTGCCATCTTTCTGTCTGGCACTT GTTTTCTTGTGTTTTCGATCACACGGTTTGGTTTCTTGCCTTGGAATTCG CTCTGGCCCATGAGAGTCAAGACAAGGCAAGTGTTTCATTCCTTTATTTT AAAGAGCCGCGTTGTATCGCCGGTTGGTTCTTTGTTTACGCATGGTTCTT CTCGCCTCCTGGCTCGTTCCATCTCAATATTTTCATTCCAGGTGAACACG CGGCACAAGAAGAGCATGGAGCTGTCGGCCTCGAGCACGACGAGCTACAC CAACACAAAGAACTGCTTCTGCGTGCGCACTAATGAGTCGGTGTGGTTCC TGCTGGCCAAGGACGAGGAGAGCATGAACAAGTGGATGACTGGCATTAAC GCACAAGTGAGAGACAGGCAGGAGAGAGAGAAGAGTGAAGTGGAGCGAAT GGGGCAGCCGGCGGGGGAAGTGGGAGAGAAGGAGAAAGCGGTAACATAGG TGTGGCGGCCGGTTCTGTTGAACCAGCACGCCTTCTTTCCTGTCGGCTCG CAGCAAGCGCGACGCGGCCGTTCTTTCCTAACAACGGCACTGCTGCCGTT GTGCTGCCCCGACCCGCATTTTCCGTATTCGGTTGTAACGCGTCGCCGTG TCTTCTCACCGCTCTGACTTGCCACTACGACTGCAATCTTACGGCGAAAA CTCACACATGTCTTGCCTATGGCAGGTGCATGAGCTGTACCTCAAGTCGT ACACGGTCCCCGAGGGCAACTTCTGGAACGAGGGCCACAAGGGGCGCTTC TTTTACAAGATGGTGGAGAAGGCCATGCCGCAGTGGATCCGTACCTACCC GGAGCACGACGCGCCGCGCACCGGCGACGGCCTCTTCCCATCCGAGGTCA TCGAGGTCGTGCAGGTGAGTTAGACGAGGGAGGATGGAGAATGCGAGCGA CCGACGTTTTTTGTCGAAAGTTGGGTTGTGAATCGCTTTGGCTGTCGTGA GACCGCGGTTACTGCCGCCGGCTTGCCGGCTCGCCGTGCTGAAGCCCGTT TCTTCTGCGCAAGACTCCACGTTTGGATTTCCTCTTTGTTTCTGCTGCTT GTCGACGCTGGCAACGCTGCTGACACTGCCATCACTGCCAATGCTGCCAA CACTGTGGATTACCTGCCGTTATCAGGTGCTGGAGCGAAATGGCGTGACG TTCCTGCGGATCGCCGACGACCGTGGCTGGACCTTCACGCGGCACTCGAC CGACAACACGGTGCTGTTCGAGGAGATCAGCGGCGAGATCGTCGAGGACA ACAAGAGCTACGGCTTCGGCAGCAGCGCACGCGAGCCTGTGCCCATCCTC TACGGGCCTGGGCTGGACTCGCAGCAGACGGGGGAGGCGCTCATGCCTGG TGAGCGAACGGGAGGCTTGACTTGCCGTTTTGTTTCTCCTTTCTGCTCGC GGTTGCTTTGGGAAGAACTCCGGTAGCGGTTCATTCGGGCCTGTTTCTTC GTTTCTTTTGTTGCCTTCCGTTGCCGGGTCCCGTTTTCGTTGCTTGCTGA TTGCCGCTGCGAACCGGCGCCCTCTTCGGCCGCCGATATTGCTGTGCTTT TGTTGGGTTTGGCGTGTTGAGACGGAATCTGATTGTTGCTGAAAAGTGTA CGTTCTGTTTTTTCCCCTAAACGACTCAGAGCGGAGTCCCGCTCTTTAGT TTATGTTGTTCCGCCTATTGACCTTGGCCATTCTCCTTCGGAATCCTGGC TGCCTATTCCGTTTCGCCTTTACATCCGCGTCTGCCGGAGCAGGCGAGAG GGCAGAAGCGATCGAGCGGTTTACGCCAAGCCCCGGTCCGGGAGATGCCG GGGTGGTGTTCATTAAGCTCAAGGACATGCGGGGGTGGGTACCAGTCAAG AGGAGGGGCGGGGAATTACACTGCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7760:548..2724+

>mRNA_P-wetherbeei_contig7760.1.1 ID=mRNA_P-wetherbeei_contig7760.1.1|Name=mRNA_P-wetherbeei_contig7760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig7760:548..2724+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGTCAAGACAAGGCAAGTGTTTCATTCCTTTATTTTAAAGAGCCG
CGTTGTATCGCCGGTTGGTTCTTTGTTTACGCATGGTTCTTCTCGCCTCC
TGGCTCGTTCCATCTCAATATTTTCATTCCAGGTGAACACGCGGCACAAG
AAGAGCATGGAGCTGTCGGCCTCGAGCACGACGAGCTACACCAACACAAA
GAACTGCTTCTGCGTGCGCACTAATGAGTCGGTGTGGTTCCTGCTGGCCA
AGGACGAGGAGAGCATGAACAAGTGGATGACTGGCATTAACGCACAAGTG
CATGAGCTGTACCTCAAGTCGTACACGGTCCCCGAGGGCAACTTCTGGAA
CGAGGGCCACAAGGGGCGCTTCTTTTACAAGATGGTGGAGAAGGCCATGC
CGCAGTGGATCCGTACCTACCCGGAGCACGACGCGCCGCGCACCGGCGAC
GGCCTCTTCCCATCCGAGGTCATCGAGGTCGTGCAGGTGCTGGAGCGAAA
TGGCGTGACGTTCCTGCGGATCGCCGACGACCGTGGCTGGACCTTCACGC
GGCACTCGACCGACAACACGGTGCTGTTCGAGGAGATCAGCGGCGAGATC
GTCGAGGACAACAAGAGCTACGGCTTCGGCAGCAGCGCACGCGAGCCTGT
GCCCATCCTCTACGGGCCTGGGCTGGACTCGCAGCAGACGGGGGAGGCGC
TCATGCCTGCAGGCGAGAGGGCAGAAGCGATCGAGCGGTTTACGCCAAGC
CCCGGTCCGGGAGATGCCGGGGTGGTGTTCATTAAGCTCAAGGACATGCG
GGGGTGGGTACCAGTCAAGAGGAGGGGCGGGGAATTACACTGCTAA
back to top