mRNA_P-wetherbeei_contig776.5.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig776.5.4
Unique NamemRNA_P-wetherbeei_contig776.5.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.250e-86
Identity = 154/305 (50.49%), Postives = 196/305 (64.26%), Query Frame = 2
Query:  194 EMAAGTVGGVTGMILVFPLDTVKCRLQTD--THYKGMTDVMRTMVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFF-RSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLA-AGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRR 1096
            E+A GT GGV GM +V+PLDT+K RLQT   + Y  +++V+ +M + EG  SLYRGLLSPV G+G ++A+SFS+YG  G+F  R R A                    A  +L + E   +GA+AG + AP+RQVFERVK VMQVR     QSPY WSG C+V LVR EG  MGL RG+ +TM RE  QF +YYP+YE+AK  LLP  ++         LA AG +AG V WLPP Y +DVIKTRM TA PG+Y  + DC+ KT RAEG    FRGLG +++RA P+HG+VF GYE T+  L  R
Sbjct:    7 ELAGGTAGGVIGMTVVYPLDTIKSRLQTSGRSRYSSISNVLTSMARKEGTLSLYRGLLSPVVGYGAMFAVSFSSYGYAGRFLLRRREA-------------------KATDELTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGVAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYLLPPDRTSTAVPEPMLLALAGGLAGCVMWLPPTYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGAR 292          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A836C8G7_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G7_9STRA)

HSP 1 Score: 270 bits (689), Expect = 8.660e-84
Identity = 147/249 (59.04%), Postives = 170/249 (68.27%), Query Frame = 2
Query:  341 SLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGEL 1087
            SLYRGL SPV G+G+L+AMSFSA G   ++ R+R   AA                       V EMT +GA+AGAVQAP RQVFERVK VMQVR+ A G++PY WSG CLV LVR+EG +MGLFRG+ S   REVPQFA+YYPAY++AKRA+LPA       H    L AG IAG VQWLPPIY+IDV+KT++ TA PG Y SIAD  RKT   EG    FRGLGPSLVRA PLH  +FAGYELTM  L
Sbjct:   20 SLYRGLASPVLGYGVLFAMSFSANGQALRYLRNRDGRAANAPAS------------------VAEMTLAGAWAGAVQAPARQVFERVKGVMQVRNGAGGKAPYSWSGACLVDLVRTEGVQMGLFRGMGSQFIREVPQFALYYPAYDVAKRAILPADGHISPIHM---LLAGGIAGTVQWLPPIYNIDVLKTKIQTAAPGTYKSIADAARKTVATEGTKGLFRGLGPSLVRAFPLHATIFAGYELTMAHL 247          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: K8Z8A3_NANGC (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8A3_NANGC)

HSP 1 Score: 249 bits (635), Expect = 3.350e-75
Identity = 141/312 (45.19%), Postives = 190/312 (60.90%), Query Frame = 2
Query:  185 FIDEMAAGTVGGVTGMILVFPLDTVKCRLQTDTHYKGMTDVMRTMVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAG--QSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRRREEAAH 1114
            F+ E+ AGTVGGV G+ L+FPLDT K RLQ   HYKG  DV+R+MV+  G +SLYRGLLSP AGFG+ +A+SF+ YG G +FFR                           +L +GEMTASGA+AG +Q+P RQ+FER+K+VMQVR +A G  + PYRWSG+CL ++      KM      S + + E            +  R   P+  +P   H    L AG +AG VQWLPP Y +DV+K+RM +A PG+Y+++ DC +K+Y+ EG G FFRGL  +L+RA PL+  +F GYE T+  L  + EE  H
Sbjct:    7 FVHELLAGTVGGVVGITLIFPLDTAKVRLQAYPHYKGPIDVIRSMVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---------------------ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLYEMNVRALQKMMAASNASGSSSNES----------NIVHRK--PSSSTPLPPH--LLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL-HQEEEIPH 282          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: W7TE76_9STRA (Mitochondrial carrier family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE76_9STRA)

HSP 1 Score: 248 bits (632), Expect = 5.620e-75
Identity = 139/290 (47.93%), Postives = 179/290 (61.72%), Query Frame = 2
Query:  317 MVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAG--QSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALL----------------------PAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRRREEAAH 1114
            MV+  G +SLYRGLLSP AGFG+ +A+SF+ YG G +FFR                           +L +GEMTASGA+AG +Q+P RQ+FER+K+VMQVR +A G  + PYRWSG+CLVQLVR EG   GLFRGL +T  REVPQFAVYYP YE+  RAL                       P+  +P   H    L AG +AG VQWLPP Y +DV+K+RM +A PG+Y+++ DC +K+Y+ EG G FFRGL  +L+RA PL+  +F GYE T+  L  + EE  H
Sbjct:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKR---------------------ELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSXNESNIVHRKPSSSTPLPPH--LLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL-HQEEEIPH 266          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: D7FLY9_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.360e-65
Identity = 123/262 (46.95%), Postives = 159/262 (60.69%), Query Frame = 2
Query:  317 MVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDA--HWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRR 1096
            M   EG  S YRGLLSPVAG+G ++A+SFS+YG   +F +         XX                ++ + E +A+G FAGA+ +P R VF+RVK VMQVR      +PY WSG C   LVR EG   GLFRG+ STM RE+ Q A+YYP+YE+ K  L     S + +       + AG IAG   WLPP+Y +DVIKTR+ +A PG+Y    DC+RKT R+EG    FRGLG S++RA P+HG+VF GYE T+G LT R
Sbjct:    1 MAAHEGLMSWYRGLLSPVAGYGAMFAVSFSSYGMASRFLQRXXXXXXXXXXSG--------------EVFLWEKSAAGFFAGAMNSPFRTVFDRVKTVMQVRVGNGRAAPYSWSGACAADLVRREGVMSGLFRGIESTMLREMLQCAIYYPSYEVTKDLLARRSTSGKSSVPEPALQMLAGGIAGCATWLPPVYCLDVIKTRLQSAEPGVYGGTWDCLRKTVRSEGTPVLFRGLGLSMLRAFPMHGLVFVGYETTIGLLTTR 248          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: D7FM07_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM07_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.420e-58
Identity = 106/194 (54.64%), Postives = 131/194 (67.53%), Query Frame = 2
Query:  518 QLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLA-AGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRR 1096
            +L + E   +GA+AG + AP+RQVFERVK VMQVR     QSPY WSG C+V LVR EG  MGL RG+ +TM RE  QF +YYP+YE+AK   LP  ++         LA AG +AG V WLPPIY +DVIKTRM TA PG+Y  + DC+ KT RAEG    FRGLG +++RA P+HG+VF GYE T+  L  R
Sbjct:   24 KLTLPEKGIAGAWAGVMNAPMRQVFERVKGVMQVRQGKKLQSPYSWSGACVVDLVRREGIAMGLCRGMGATMLREPLQFGIYYPSYEIAKDYFLPPDRTSTAVPEPILLALAGGLAGCVMWLPPIYCLDVIKTRMQTAEPGVYRGVRDCLMKTLRAEGMPVLFRGLGAAMLRAFPMHGLVFLGYETTIDLLGAR 217          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A7S1G657_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G657_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.390e-56
Identity = 120/298 (40.27%), Postives = 167/298 (56.04%), Query Frame = 2
Query:  203 AGTVGGVTGMILVFPLDTVKCRLQT-DTHYKGMTDVMRTMVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTR 1093
            +G   GV+G+ +V+PLDT K RLQT    YKG  D +RT+VK EG  +LYRG+ +P+AG+G + ++  S YG      R R A+AA                    +L + E  A+GA AG V   +R   ERVKAVMQVR +  G   +R S  CLV  +R+EG  +  F    +T+ RE+ Q   Y+PA+E+ KRAL PAG S  D  +   L AG +AG+ QWLPP+Y IDV+K+RM   P G    +   +R +   EG     RG+GP++VRA P+H  +    EL    L++
Sbjct:   55 SGLTAGVSGLTVVYPLDTTKLRLQTCPGEYKGAFDCLRTVVKREGFAALYRGMSAPIAGYGAINSLLLSTYGMTAVVLRRRNAEAA---------------GGVDRELSMEESMAAGAVAGVVSTVLRAPVERVKAVMQVRRNPDGTKVFRNSWRCLVGTMRTEGL-LSPFAAGRATLLRELFQGVAYFPAFEITKRALTPAGGSSNDLDFWRLLIAGGVAGITQWLPPMYCIDVVKSRMEVPPAGSTPGVLGVLRASVAKEGGMVLLRGMGPAMVRAFPMHATILTTNELMTAWLSK 336          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A0L0D911_THETB (Carnitine/acylcarnitine n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D911_THETB)

HSP 1 Score: 186 bits (471), Expect = 7.950e-51
Identity = 120/300 (40.00%), Postives = 168/300 (56.00%), Query Frame = 2
Query:  197 MAAGTVGGVTGMILVFPLDTVKCRLQTDTH-YKGMTDVMRTMVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSA--AGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRAL---LPAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTM 1078
            + AG +GG+ G+ + FPLDT+K R+  +   Y  +   +R+MV +EG  SLYRGL +PVAG+G++ A++F      G F  +++    VV                    M   +  + AFAG VQ+ VR   E  K V Q  H+   A   P++ +   +  +VR++G    LFRGL +T+AREVPQ+A+YYP Y L K AL   LP+  +P         AAGA+AG  QW+P I  +DVIKTRM  AP G Y S+  C R  +  +G   FF+G  P+L+RAAPLH  VF GY+ TM
Sbjct:   21 VVAGNMGGIVGLAISFPLDTLKVRMMMEPDKYVSLGATLRSMVASEGPASLYRGLTAPVAGYGVINAVAF------GSFEWAKSWLDEVVDETRAGS-------------MAQVVIPAAAFAGLVQSFVRGPVELAKTVQQAWHNPGNARAPPFKSAFHGIAHVVRNDG-PSALFRGLGATIAREVPQYAIYYPTYALLKPALTDALPSKYAPVAV-----AAAGALAGSAQWVPTI-PVDVIKTRMQGAPAGTYTSVVHCARTLWAEQGLATFFKGTAPALIRAAPLHAGVFLGYDTTM 294          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A4D9D591_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D591_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.820e-48
Identity = 94/192 (48.96%), Postives = 120/192 (62.50%), Query Frame = 2
Query:  611 MQVRHSAAG--QSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALL----------------------PAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTMGELTRRREEAAH 1114
            MQVR +A G  ++PYRWSG+CLVQLVR EG   GLFRGL +T  REVPQFAVYYP YE+  RAL                       P+  +P   H    L AG +AG VQWLPP Y +DV+K+RM +A PG+Y+++ DC +K+Y+ EG G FFRGL  +L+RA PL+  +F GYE T+  L  + EE  H
Sbjct:    1 MQVRKAAGGVDKAPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSHEKNRVNRKPSSSTPLPPH--LLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAAL-HQEEEIPH 189          
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Match: A0A8H7BX49_9FUNG (Carnitine transporter n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BX49_9FUNG)

HSP 1 Score: 177 bits (450), Expect = 1.030e-47
Identity = 113/315 (35.87%), Postives = 168/315 (53.33%), Query Frame = 2
Query:  146 PGSVITTTMQSGHFIDEMAAGTVGGVTGMILVFPLDTVKCRLQTDTH-YKGMTDVMRTMVKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVXXXXXXXXXXXXXXSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQVRHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYPAYELAKRALLPAGQSPRDAHWGYNLAAGAIAGVVQW---LPPIYSIDVIKTRMTTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYELTM 1078
            P  V +TT+ S   I    +G  GG+  +++  P D VK RLQT    YK   D  + ++K +G   LYRG+ +P+A    ++A+SF +Y  G K   S  +D                       L + E+T +GAF+           ER+K +MQ++    G+  Y+   D   QL + EG    +FRG  +T+ R+ P  A Y+ AYEL K+AL PAG  P D + G  L AG +AGV  W   +PP    DV+K+R+ +AP G Y+ +ADC++KT +A+G GA F+GLGP+++RA P +   F G E +M
Sbjct:   17 PVEVKSTTVSS---IKSFLSGGFGGMAAVLVGQPFDLVKVRLQTSEGLYKNTADCFKQIIKKDGVLGLYRGMATPLASITPIFAVSFFSYDLGKKIVYSVRSD------------------KEDKSLSLAEITFAGAFSAVPTTFFMAPSERIKVLMQIQ-GQGGEQKYKGPLDAARQLYK-EGGLRSIFRGTGATLLRDSPGSAAYFVAYELVKKALTPAGSRPEDLNPGAVLFAGGMAGVAMWTIAIPP----DVLKSRIQSAPAGTYSGLADCLKKTIKADGPGALFKGLGPAMLRAFPANAATFLGVEYSM 304          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig776.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE1.250e-8650.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8G7_9STRA8.660e-8459.04Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
K8Z8A3_NANGC3.350e-7545.19Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
W7TE76_9STRA5.620e-7547.93Mitochondrial carrier family n=1 Tax=Nannochlorops... [more]
D7FLY9_ECTSI2.360e-6546.95Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
D7FM07_ECTSI1.420e-5854.64Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A7S1G657_9STRA1.390e-5640.27Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0L0D911_THETB7.950e-5140.00Carnitine/acylcarnitine n=1 Tax=Thecamonas trahens... [more]
A0A4D9D591_9STRA1.820e-4848.96Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8H7BX49_9FUNG1.030e-4735.87Carnitine transporter n=1 Tax=Apophysomyces ossifo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig776contigP-wetherbeei_contig776:4039..6867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLY9
PFAMsMito_carr
Model size1633
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.87e-69
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
Cds size969
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig776.5.4prot_P-wetherbeei_contig776.5.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig776 4208..6372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.4319284-UTR-P-wetherbeei_contig776:4038..42071683186999.4319284-UTR-P-wetherbeei_contig776:4038..4207Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig776 4039..4207 +
1683186999.5003827-UTR-P-wetherbeei_contig776:6372..68671683186999.5003827-UTR-P-wetherbeei_contig776:6372..6867Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig776 6373..6867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186999.450871-CDS-P-wetherbeei_contig776:4207..43721683186999.450871-CDS-P-wetherbeei_contig776:4207..4372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig776 4208..4372 +
1683186999.4613254-CDS-P-wetherbeei_contig776:4562..48441683186999.4613254-CDS-P-wetherbeei_contig776:4562..4844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig776 4563..4844 +
1683186999.471387-CDS-P-wetherbeei_contig776:5164..53181683186999.471387-CDS-P-wetherbeei_contig776:5164..5318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig776 5165..5318 +
1683186999.4815664-CDS-P-wetherbeei_contig776:5497..56621683186999.4815664-CDS-P-wetherbeei_contig776:5497..5662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig776 5498..5662 +
1683186999.491099-CDS-P-wetherbeei_contig776:6169..63721683186999.491099-CDS-P-wetherbeei_contig776:6169..6372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig776 6170..6372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig776.5.4

>prot_P-wetherbeei_contig776.5.4 ID=prot_P-wetherbeei_contig776.5.4|Name=mRNA_P-wetherbeei_contig776.5.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MQSGHFIDEMAAGTVGGVTGMILVFPLDTVKCRLQTDTHYKGMTDVMRTM
VKTEGATSLYRGLLSPVAGFGLLYAMSFSAYGAGGKFFRSRAADAAVVAD
DDKISSAADGGSSAACQLMVGEMTASGAFAGAVQAPVRQVFERVKAVMQV
RHSAAGQSPYRWSGDCLVQLVRSEGWKMGLFRGLSSTMAREVPQFAVYYP
AYELAKRALLPAGQSPRDAHWGYNLAAGAIAGVVQWLPPIYSIDVIKTRM
TTAPPGMYNSIADCVRKTYRAEGAGAFFRGLGPSLVRAAPLHGIVFAGYE
LTMGELTRRREEAAHQQRVLML*
back to top

mRNA from alignment at P-wetherbeei_contig776:4039..6867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig776.5.4 ID=mRNA_P-wetherbeei_contig776.5.4|Name=mRNA_P-wetherbeei_contig776.5.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2829bp|location=Sequence derived from alignment at P-wetherbeei_contig776:4039..6867+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGAAAGAAAAAGGAGAGGGAAGAGTTAGGCAAGCGTCTTGCGGACAGC AGAAAAGTCGGCTAGGCCGATACCGAAATAGTTAATATCGGGTTTGCGAC GATTGCGGTGACACTGATTTCATTTACGAAAAGGAACCCGGTCATCCAGG ATCTGTAATTACAACAACGATGCAATCGGGGCACTTCATTGACGAAATGG CGGCAGGGACGGTAGGGGGCGTTACTGGAATGATATTAGTTTTCCCTTTA GACACCGTCAAGTGCCGCCTCCAGACAGACACACATTACAAGGGAATGAC AGATGTCATGCGGACGATGGTCAAGACGGAAGGAGTGAGTGTCTCCACCT TCTTGCCTAGCGGTACACATCGTTAGATTCGTAGTTAGTTCTGATCAACG TCTTGGCTCGTTTTCTGGAACACCCTTTTGACGCTGATCGCATGCCCTCC AAAGCCTTTTTCGTGTTAGAGGGGGCCTCAATTGATGTCTTTCGCCCGGT AATCTTCCCGTTTGTTACTTCCAGGCCACCTCTCTGTATAGAGGCCTCCT CTCCCCCGTCGCCGGTTTCGGACTGCTCTACGCCATGTCCTTTTCCGCGT ACGGTGCCGGCGGAAAGTTCTTCCGCTCCCGAGCCGCCGATGCCGCGGTT GTCGCCGACGACGACAAAATAAGCTCTGCGGCCGACGGCGGCAGCAGCGC CGCATGTCAGCTTATGGTCGGGGAAATGACGGCGTCCGGGGCGTTCGCAG GCGCCGTGCAGGCCCCCGTGCGGCAAGTCTTCGAGCGGGTCAAGGCCGTC ATGCAGGTCCGTCGTTTGTTAAGAAACTGACGTTGCAAACGGGTTGATGT ATTCACCGGACAGGTCAAAGCTGTCTCTCAGCTGATGGTTTTTGTGGTTG GTAGTGTGTCGCTCTTCACAGTGACTTTTACAAGTTTGGCAGCCTCGTTG TTACATTGTCATTCTGTCGATACACCTTGTCTCCTCCAACCGTCCATGAG GCGTTGTTAAGGCAGTTTTGGGGCTTTTTCTAGACCCCAAGTATTCAGCT TTTATACACAGCTCTCACCTTGCTGTGCCAAAGTTCCCATCATTTCAATC GAACGTCGTTAGGCCGTTTCCACCAGGTGCGACACTCTGCGGCGGGGCAG TCGCCGTACCGGTGGAGCGGCGACTGCCTCGTGCAGCTGGTGCGGTCGGA GGGCTGGAAGATGGGGCTCTTTCGTGGGCTGAGCTCGACCATGGCGCGGG AGGTGCCGCAGTTTGCCGTCTACTACCCGGGTGAGAGAGACAGCAGTGAT TTCCTTTTTGATGAAGCCATTTCTCCGTACTTTGGGAAGATGTTTCTTTT TTCGGCGCTTTGTTTTGTGGGCAAACGGACCGTTTCTCCATCGGAAACCA ACCTCTTGCCGGTCAAACAACTAGAAGATATGCTTCAACCCCTCCCTTCT CTCCCGCAGCCTACGAACTGGCGAAGCGGGCGCTGCTGCCGGCCGGACAG AGCCCTCGGGACGCCCACTGGGGCTACAACCTGGCGGCGGGCGCGATCGC GGGGGTGGTGCAGTGGCTGCCGCCCATCTATAGCATCGACGTGATTAAGA CGCGCATGACCACAGCCCCGCCAGGTTTGACTCCACGTTTTTTTCTATGT GTTTGCCTGGCCTCGTTTCTCCAAAAGAGTTAGGACTCCCAAGATGATGC GATCTCTTCGATTACGCTGACGCTTCCTCAATTTTGGGGAGGAATCTCAG GGTATAGCAGGTTGCTTCTGGTTAAGCATGCGCTCTCCGTCTCGATATGT CCCGGCTGTTGATGCTGTTCATGTTAGTCCATGAGTACCTTGCTGCTGAA GATGATGCAATCTCTAACGTTGGTCCACTTAGCCTCTTCTCAGCTCCTGG GAGAAGTAGAGTGTGTCGCAGGCAAGCTCTTTCCGAATAAAGCTGAGCTC TCCGTATCGCTGCATCTTGCTCTTCTCTGATCTGTCTGAAGCACGCGTTC AAACGGAGCTGATGATAATGCTGCCCATGTCGGCCTCGCCGCCGCTGCTG CTGCTTCCGTTCTCACGCCGCCGTCGCCGCCACCACCGTCTCTCTTCCGC CGGTGCGCCGGCGCCCTCCTTTTCCTTCTAGGCATGTATAACAGCATCGC CGACTGCGTGCGCAAGACGTACCGCGCCGAGGGCGCCGGTGCTTTCTTCC GCGGGCTCGGGCCATCGCTTGTGCGGGCGGCGCCGCTGCACGGCATCGTC TTTGCCGGCTACGAGCTGACCATGGGGGAGCTGACACGGCGACGGGAGGA GGCGGCGCACCAACAGCGGGTCCTGATGCTGTGAGTGCGCAATACAGGCA CAACGGCACGGTTTGGGACTCGAGGGCTGCGTTGGCTGGGGGTAACGGCT TTGCTGGCGGCGGGGGTTGACGTCTGTTTTTTCCTTTAGACAGTTTTGGC TCTTGGCTACGGGGCGGCTTTTTTCCAACGTATGTGCCGTTGGTGCTGTC ATGTATAGTAATTTTTGTTGCTCACGAGCTTGTAATTTGAACAATTTGGC GTGGTGCTGGCGGAAGGGTGACGCTGGTGCCGGTGGCAGTATGTCATGTG CTGCGACCGCCGCCTCAGGACCGTCCTCTGGCGTCTCATGGGGCGTCGTG AACGCAATGCAACGATTCAAGGCAGAGAGAAGGAAAGATCCGGCTGCGCA TGTATGTACTAGTAATAGCGTGTTTCATAGACTGATTCGGCTGGCGCCAG CGATGCTATTGTGGAGCTTTTGGAAGGTTCATTAAAGGCACACAAGATTG AACACAATCACACCATCATTACTTGCTGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig776:4039..6867+

>mRNA_P-wetherbeei_contig776.5.4 ID=mRNA_P-wetherbeei_contig776.5.4|Name=mRNA_P-wetherbeei_contig776.5.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig776:4039..6867+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAATCGGGGCACTTCATTGACGAAATGGCGGCAGGGACGGTAGGGGG
CGTTACTGGAATGATATTAGTTTTCCCTTTAGACACCGTCAAGTGCCGCC
TCCAGACAGACACACATTACAAGGGAATGACAGATGTCATGCGGACGATG
GTCAAGACGGAAGGAGCCACCTCTCTGTATAGAGGCCTCCTCTCCCCCGT
CGCCGGTTTCGGACTGCTCTACGCCATGTCCTTTTCCGCGTACGGTGCCG
GCGGAAAGTTCTTCCGCTCCCGAGCCGCCGATGCCGCGGTTGTCGCCGAC
GACGACAAAATAAGCTCTGCGGCCGACGGCGGCAGCAGCGCCGCATGTCA
GCTTATGGTCGGGGAAATGACGGCGTCCGGGGCGTTCGCAGGCGCCGTGC
AGGCCCCCGTGCGGCAAGTCTTCGAGCGGGTCAAGGCCGTCATGCAGGTG
CGACACTCTGCGGCGGGGCAGTCGCCGTACCGGTGGAGCGGCGACTGCCT
CGTGCAGCTGGTGCGGTCGGAGGGCTGGAAGATGGGGCTCTTTCGTGGGC
TGAGCTCGACCATGGCGCGGGAGGTGCCGCAGTTTGCCGTCTACTACCCG
GCCTACGAACTGGCGAAGCGGGCGCTGCTGCCGGCCGGACAGAGCCCTCG
GGACGCCCACTGGGGCTACAACCTGGCGGCGGGCGCGATCGCGGGGGTGG
TGCAGTGGCTGCCGCCCATCTATAGCATCGACGTGATTAAGACGCGCATG
ACCACAGCCCCGCCAGGCATGTATAACAGCATCGCCGACTGCGTGCGCAA
GACGTACCGCGCCGAGGGCGCCGGTGCTTTCTTCCGCGGGCTCGGGCCAT
CGCTTGTGCGGGCGGCGCCGCTGCACGGCATCGTCTTTGCCGGCTACGAG
CTGACCATGGGGGAGCTGACACGGCGACGGGAGGAGGCGGCGCACCAACA
GCGGGTCCTGATGCTGTGA
back to top