mRNA_P-wetherbeei_contig7743.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7743.1.2
Unique NamemRNA_P-wetherbeei_contig7743.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7743.1.2 vs. uniprot
Match: A0A7S0E168_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E168_9CRYP)

HSP 1 Score: 67.0 bits (162), Expect = 1.630e-9
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 3 
Query:  237 LTQASKLRLQETCRAMCAVLDDPSAWQRLDLGSEVVGWRKMQRRR-SRLSLLPMFMITREVVQQARFRDLASVSLEGQYLGVDR--QPPDLLLKLFTAAPRVERLNLLGC 557
            L Q S+L LQ   R+   + D+P  W  LD+    +G  +M+  R S LS  P+F   + V++QA+FR + SV L+G +LG +   + P LL+ L +   R+ RLNL  C
Sbjct:   70 LPQRSRLILQMVARSCRQLCDNPLLWLHLDVSKSAIGVARMRSGRPSCLSPEPLFFKCKSVIEQAKFRSVVSVDLQGVFLGAESHVEGPRLLVLLLSQCSRIRRLNLRDC 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7743.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0E168_9CRYP1.630e-937.27Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7743contigP-wetherbeei_contig7743:121..2402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size982
Hectar predicted targeting categoryother localisation
Exons5
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7743.1.2prot_P-wetherbeei_contig7743.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7743 121..2397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.6217341-CDS-P-wetherbeei_contig7743:120..4501683186998.6217341-CDS-P-wetherbeei_contig7743:120..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7743 121..450 -
1683186998.63294-CDS-P-wetherbeei_contig7743:1002..12271683186998.63294-CDS-P-wetherbeei_contig7743:1002..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7743 1003..1227 -
1683186998.6432955-CDS-P-wetherbeei_contig7743:1599..17551683186998.6432955-CDS-P-wetherbeei_contig7743:1599..1755Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7743 1600..1755 -
1683186998.6533878-CDS-P-wetherbeei_contig7743:2002..21031683186998.6533878-CDS-P-wetherbeei_contig7743:2002..2103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7743 2003..2103 -
1683186998.66682-CDS-P-wetherbeei_contig7743:2234..23971683186998.66682-CDS-P-wetherbeei_contig7743:2234..2397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7743 2235..2397 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186998.6768293-UTR-P-wetherbeei_contig7743:2397..24021683186998.6768293-UTR-P-wetherbeei_contig7743:2397..2402Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7743 2398..2402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7743.1.2

>prot_P-wetherbeei_contig7743.1.2 ID=prot_P-wetherbeei_contig7743.1.2|Name=mRNA_P-wetherbeei_contig7743.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=325bp
MSSRGEVGLLGIPYDESSEDEDWTDEEEEANTSVTKRQSRSSTRSAKKPN
SAISAAHQPAAGHAPQAILGVVVASEFLTQASKLRLQETCRAMCAVLDDP
SAWQRLDLGSEVVGWRKMQRRRSRLSLLPMFMITREVVQQARFRDLASVS
LEGQYLGVDRQPPDLLLKLFTAAPRVERLNLLGCRMGSSAPGLEGAWAEM
AVVEGLSRLHHLAIEITTNKGLQILMHGCRELRSLHILGAARDAAQPNDA
GFIAAFRAAEDGRSSEHEPAPTSAASTAASMTAAAAPAAEKLKLTTLTLH
SKNSVGVAGLSAVLRSCRQLESLEV
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mRNA from alignment at P-wetherbeei_contig7743:121..2402-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7743.1.2 ID=mRNA_P-wetherbeei_contig7743.1.2|Name=mRNA_P-wetherbeei_contig7743.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2282bp|location=Sequence derived from alignment at P-wetherbeei_contig7743:121..2402- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAATGTCGAGCCGGGGGGAAGTCGGCCTCCTCGGAATCCCCTACGAC
GAAAGCAGCGAAGACGAGGATTGGACGGACGAAGAAGAAGAGGCGAACAC
CTCAGTGACAAAACGCCAGTCTCGGTCTTCTACGCGATCAGCGAAGAAAC
CAAACAGTGCCATATCTGGTGAGGCGCTGCGCTGGTCTGTACTTGCAAGC
TTATAACATTGCCTTGACCACAATCTGCGCAAGTTGATTCATAACATTTG
AAAGTACTGCCATTCTCCTCTCTCCTCCTTTTCCCTTACCCTTCTCCAGC
AGCGCATCAGCCGGCGGCAGGGCATGCGCCTCAGGCGATTCTTGGCGTTG
TAGTCGCATCAGAGTTCCTCACTCAGGCATCGAAGTTGCGGCTCCAAGAG
GTGAACGCCTCTTCTTCTTTTCCGGCAATCTACACTGTTTTATGTGGTGT
TTGTGGTTCAGATGGCCGGCATCCGCCATGCAGCGACGTGGCGCGTTCTT
ATTTAACTCATTTCTGCGCCTTTTGGCTGCCATTAGCGCCGCGCTAACCG
CCGCAACCAATGCCTTCCTCTGCCACCATTCCTCACCCCTGCCGCCGCCC
CCACCGCCGGAGCCACCCCTGCTCCTGTTCTTCGCCGCCTCGAACAGACC
TGTCGCGCGATGTGCGCTGTGCTGGACGATCCGTCGGCGTGGCAGCGGCT
CGATCTCGGCAGCGAGGTGGTGGGCTGGCGGAAGATGCAGCGGCGTCGCT
CGCGCCTCAGCCTCCTACCCATGTTCATGATCACGCGGGAGGTGGTCCAG
CAGGTGCGCCGCGGTACATGGTCGCGGTTGGAGCATGCCGGGGCCGGGAA
TGTTGTTAAGAGAAGTCAATGCTACTTACATATGGGTCTTTGGTGCAGCG
GCGGGCTGGCAGCTATTCCACCATTTTTTTTAATGCGCTCACCAGCCGGC
AGGGTTACATCCAGATTGAATGAGACAACCTTACTCAAAACTACATGTTT
AGACTAGACGCGACTTGGGCTCTTCTTTTTCCCCAAGCGCGCCCAAATCC
TACGCTTAAACCGCTCATCGCCGCCGCTCCGGCATTGAAACACCTTTTAC
GCCACGGCTCATCCGCCGTCTTGTCCTCCGCCGCCGTTTCCCTCCGCCGA
CTCGTCCAAAAACACACCGGCACAGGCACGCTTTCGGGATCTGGCGAGTG
TGTCGCTGGAGGGGCAGTACCTCGGCGTGGACCGTCAGCCGCCCGATCTG
CTGCTCAAGCTCTTCACGGCGGCGCCCCGCGTCGAGCGGCTCAACCTGCT
GGGCTGCCGCATGGGGTCATCGGCGCCGGGGTTGGAGGGAGCGTGGGCCG
AGATGGCCGTCGTGGAGGGCTTGTCGCGCCTCCACCACCTGGCGATCGAG
GTGGGGAGACAACGCGGCAGCGGCGGCGGCAACAGCTGGGGTTGGTTTGG
GCCGTCGCTGGGTTGGGCTTTACAAGGAGAGTTGGACTTTCGGGGTTCTG
CATTTGATGGTGGGCTGGGTTTTGCTGGGCCGGGCTGGGGGCGGCTGTTT
CTGCTGCTTCTTTGGGGAGATCAGAAAGAGTGCACCACGCGGTGGATGCC
GCTGTTTTGCCCTCAAAGTTTGGTGTTTGTTTGTTTATGGCTGCAGTCTC
TGTGGCAATGCCACACTGAGAATCGTGGCAAGGCGCGGCGTGGACCTTTC
ACTTAAAATAACCTGAGGGAGGGGCAAGGAGAAAGAGGGTGAAGCGCAGT
CCCGGTTCGGCTTAATGCACAATTGCAGGATCTAAGCGTGTGCATGACCG
TGAAGTAGGACTGCACATAAAGGCCGTTTCTCTCCAGTTTCGTCGCCGTC
CTTATTGTTTCAGGTGCCTATATCTCTCTTCAGCTTGCGGCGCTGACTGT
AGCTTCCGTTTCTCCGATTTTTTCCTTCTCCGCCGTGCATCCCTGCGCAC
AGATAACTACCAACAAGGGTCTGCAGATCTTGATGCACGGCTGCAGGGAA
CTCCGCAGCCTCCATATTCTCGGCGCGGCGCGCGATGCGGCGCAGCCCAA
TGACGCCGGCTTCATCGCGGCCTTCAGGGCGGCAGAGGACGGCAGATCCA
GTGAGCACGAGCCGGCGCCGACATCGGCAGCTTCAACGGCGGCTTCAATG
ACAGCGGCGGCGGCGCCCGCGGCGGAAAAACTCAAGCTGACAACTCTGAC
TCTGCACTCCAAAAATTCCGTGGGCGTGGCTGGGCTCAGCGCAGTGCTGC
GCTCCTGTCGGCAGCTGGAGAGCCTCGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7743:121..2402-

>mRNA_P-wetherbeei_contig7743.1.2 ID=mRNA_P-wetherbeei_contig7743.1.2|Name=mRNA_P-wetherbeei_contig7743.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig7743:121..2402- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAGCCGGGGGGAAGTCGGCCTCCTCGGAATCCCCTACGACGAAAG
CAGCGAAGACGAGGATTGGACGGACGAAGAAGAAGAGGCGAACACCTCAG
TGACAAAACGCCAGTCTCGGTCTTCTACGCGATCAGCGAAGAAACCAAAC
AGTGCCATATCTGCAGCGCATCAGCCGGCGGCAGGGCATGCGCCTCAGGC
GATTCTTGGCGTTGTAGTCGCATCAGAGTTCCTCACTCAGGCATCGAAGT
TGCGGCTCCAAGAGACCTGTCGCGCGATGTGCGCTGTGCTGGACGATCCG
TCGGCGTGGCAGCGGCTCGATCTCGGCAGCGAGGTGGTGGGCTGGCGGAA
GATGCAGCGGCGTCGCTCGCGCCTCAGCCTCCTACCCATGTTCATGATCA
CGCGGGAGGTGGTCCAGCAGGCACGCTTTCGGGATCTGGCGAGTGTGTCG
CTGGAGGGGCAGTACCTCGGCGTGGACCGTCAGCCGCCCGATCTGCTGCT
CAAGCTCTTCACGGCGGCGCCCCGCGTCGAGCGGCTCAACCTGCTGGGCT
GCCGCATGGGGTCATCGGCGCCGGGGTTGGAGGGAGCGTGGGCCGAGATG
GCCGTCGTGGAGGGCTTGTCGCGCCTCCACCACCTGGCGATCGAGATAAC
TACCAACAAGGGTCTGCAGATCTTGATGCACGGCTGCAGGGAACTCCGCA
GCCTCCATATTCTCGGCGCGGCGCGCGATGCGGCGCAGCCCAATGACGCC
GGCTTCATCGCGGCCTTCAGGGCGGCAGAGGACGGCAGATCCAGTGAGCA
CGAGCCGGCGCCGACATCGGCAGCTTCAACGGCGGCTTCAATGACAGCGG
CGGCGGCGCCCGCGGCGGAAAAACTCAAGCTGACAACTCTGACTCTGCAC
TCCAAAAATTCCGTGGGCGTGGCTGGGCTCAGCGCAGTGCTGCGCTCCTG
TCGGCAGCTGGAGAGCCTCGAGGTG
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