mRNA_P-wetherbeei_contig7731.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7731.1.1
Unique NamemRNA_P-wetherbeei_contig7731.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7731.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7731contigP-wetherbeei_contig7731:3..2973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G7I9
Preferred nameMIB1
PFAMsAnk,Ank_2,Ank_4,MIB_HERC2,Pkinase,VPS9,ZZ,zf-C3HC4_3
Model size2205
Max annot lvl2759|Eukaryota
KEGG koko:K10645
Hectar predicted targeting categorysignal peptide
Exons4
Evalue0.000139
EggNOG OGsCOG0666@1|root,KOG0032@1|root,KOG0032@2759|Eukaryota,KOG2319@2759|Eukaryota
EC2.3.2.27
Descriptionguanyl-nucleotide exchange factor activity
Cds size453
COG categoryGM
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7731.1.1prot_P-wetherbeei_contig7731.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7731 1892..2344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.7525947-UTR-P-wetherbeei_contig7731:2..3351683186997.7525947-UTR-P-wetherbeei_contig7731:2..335Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7731 3..335 -
1683186997.7641518-UTR-P-wetherbeei_contig7731:643..8161683186997.7641518-UTR-P-wetherbeei_contig7731:643..816Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7731 644..816 -
1683186997.7826447-UTR-P-wetherbeei_contig7731:1079..18911683186997.7826447-UTR-P-wetherbeei_contig7731:1079..1891Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7731 1080..1891 -
1683186997.8126829-UTR-P-wetherbeei_contig7731:2344..23691683186997.8126829-UTR-P-wetherbeei_contig7731:2344..2369Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7731 2345..2369 -
1683186997.8255126-UTR-P-wetherbeei_contig7731:2564..29731683186997.8255126-UTR-P-wetherbeei_contig7731:2564..2973Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7731 2565..2973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.7975686-CDS-P-wetherbeei_contig7731:1891..23441683186997.7975686-CDS-P-wetherbeei_contig7731:1891..2344Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7731 1892..2344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7731.1.1

>prot_P-wetherbeei_contig7731.1.1 ID=prot_P-wetherbeei_contig7731.1.1|Name=mRNA_P-wetherbeei_contig7731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MSSNSLRLMLINLDSCAAILGGAAIGAGSDSLAEVLGTAFPSWDGGSHGY
TTCHLCPERAIAEWNCRAPHPPDTAVDVWALGMVLHWPHTGQDYLRSAAE
DGTVLRQLCDPSLRVGRSVAGRHQRPVVRCRGVAHHAEAESDAAWGDQSD
*
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mRNA from alignment at P-wetherbeei_contig7731:3..2973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7731.1.1 ID=mRNA_P-wetherbeei_contig7731.1.1|Name=mRNA_P-wetherbeei_contig7731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2971bp|location=Sequence derived from alignment at P-wetherbeei_contig7731:3..2973- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCTGAGACACCCGCAGGCGGCCTCGCCGGCGCACAGCCACGCCGGT
CTTGGTGGCAGCCCCGGCGGTGGCGGCGGCGGCGGCGGCGGTCGCAGCAT
GCACAACAACGGCAGGGGCGAAGGGCAGCGCTACACGGACCGTCATTGCG
GCGGCACCTCCACGCTGTTAGCGGCATCTTTTTTGTACGGGACTCCCGGA
CGGACTGCGACATGGTGCTCAAGCCCTTCGCAACGGCCGACGCCGCGGCG
GAGGAATCCTTCCGCCGGGAGATTGCCGCCATCTGGCACTTAGGCCCGCG
CCGCTGCAACGCCGTCGTGCCGTTCCGGGACTTCTTTTCCGAGGCGGACG
GCGGCGGAGCAACGTTTGGGATCCTCGTCACGGAAAAGGTCGGCCTGAGC
CTGCAGCAGGTTCGTTTTGTTTTTAGTTCTGGCACTGATTGATGGCGGCC
CCTTTCACGCATCCGCACCGCGCCTTTTTCATCTTCGGTCGGCCCTGCTC
TCCACCAAACCTCAAGGTCGGCGAACCATTGTGCTAGCATCTTTTTCCGT
TGCTCCCGCCCTCCCTCCTGCCTTCCGCCGCGTGTTGTGCCCTTATTTTG
CCAGTGACATAAAGCCAGTCAGCTTTATCATGTCCTCCAACTCGCTGCGG
CTGATGCTCATCAACTTGGACTCTTGCGCCGCCATCCTGGGCGGCGCTGC
CATCGGCGCCGGCAGCGACAGCCTGGCCGAAGTTCTCGGCACCGCGTTCC
CGTCGTGGGACGGTGGCAGCCACGGCTATACCACCTGCCACCTGTGCCCG
GAGCGCGCGATCGCGGAGTGGAACTGCCGCGCGCCGCACCCGCCTGACAC
CGCGGTGGACGTTTGGGCGCTGGGCATGGTGCTCCATTGGCCGCACACCG
GCCAGGATTATCTTAGGTCGGCGGCAGAAGACGGCACCGTCCTGCGGCAG
CTCTGCGACCCGTCGTTAAGGGTCGGTCGAAGTGTGGCTGGACGGCACCA
GCGACCGGTCGTACGTTGTCGAGGCGTTGCACACCATGCTGAGGCCGAAT
CCGATGCGGCGTGGGGAGATCAGTCAGATTAAGATCAAGCACAGGTATAA
AGCGCCGCGCAACCACTTTCGCTTTCGGCCCTGCGTTGGCGCGAAAGGCG
TAGTTTGTGGAAGCTGTTTGCACTTTCTTGCTCCGCTGCTCCTGCTTTGC
GGCGCCTTTCCTTCGCAGCTACTTCTCTGACGGCGCGCGCCGACGGCTCT
TGCCGGCAAGAACAGAGCGCGCTACGACGCCCTCTTGGGCCTGCTGGCAG
ATCTGAAGTTAGCTACGACGGAAAACGCGAGAAGCTCGAGATTTTTGACG
GCGACGAGGTGTCGGCGCTCCAGACCTCCCTCCAGAAGTGAATCGACTCC
AACGCCGCCGGCGGGCTGACAGCGAAGCAGGACGCGCTGCTGCGGGAGCT
GCGTGCCGCGGCAGGCGCGACGCATGCCGAAGTGCACCGCCTGACCTACG
CCGTCGATCAGATGCAGCTCTGCATGGCGGGGCTGGACGCCAATTGCGAC
CGTCGCCCGACCAGCTTGGTGGCGCCGCCCCCGTGCGCGACGTGCTGGCA
ATCGGCGAGCTCCGCTGCCCGCGCATCTTCGTCGTGTTGCCGTGGGGCGA
TCATGGTTCGCCGCCGGCTCTTGGCGGTTACTGCAGCGGCGGTTACGGCG
GCGGCGGCGGTTGCGGCGGCGGGGGCGGCAAGCGGCACGCCATCTGCGCG
GGCTTCAAACAGATGAGCCTGATGGACAAGACGGCGTCGACTGTCGGCGG
GCGCGAACTCTTCACGAAGAAGATGCGGCTGGCCTTTCTGTTGGAGACAG
GCTTTCACTTTACAGATGCCAACATCGACATCGAGTCTCCCCGGGTACGA
TTTACTTTGCGGACGGGGGGCAACGGGTGGACAGTGGACGATGGTCCGGT
GGCTTCTTCTTTTGAGTGGCCCTGTGTTCTGTTTTCCTGCTTGTTGGTTG
CTTTTTGTTTCTGCTGGCGAATGCCGACTAGGAATGAGAGATGTGCGCTT
CAGCGAAGTCCTTCCTTACGAAGGGAGCATCAAACCTCTTAGCTGGACTA
ACGCAGCCAACCCCACCCGCGTCCCTTTCCCTACCTCCCTTCTTCCTCCT
CTCTCAGAACCACGTGGTGAAGTTCACGCCGGCCATCCAGTACAGCCTGA
GCCGCCTCCAGGTGGTGGCCCGCTTCGGCGCCCTCCCCGGAGTCGGCAAC
GCTCTGGGCGGCCTCGTGGACGCGACGGGGCTGGAGGACTTCCACCAGTT
TGTCGGCCACGCGCTCCAGATGAATGAATGGTGTGAGCGGGTTTCTGGGC
TTCACTCCCCTATGCAACGGCGGCTCGATCGTGTTGCTCTGAGCCCAACT
CTTGTTTTTGAGGAATATATTAGGAGACTCTGTGCGTGCCTTGAACTAGA
TGGATCCATCGGCGGACGGTTACGCTCAGTTGGCTTTTTGCTCTAGTAGC
TGCCATGCGCATCTATCTAAACGCGGCGCCACTTTGGCTTAGCCAGCGGG
TCACGGTTGCATTGCTGCATCCCTAACATTGCTCCACCCTTGCCTGCCGT
TGCACACTCCGTCGCGTCGGCCGTCTCCGTTTCCCCAGAGCATCGAACAG
GTGGTGGGCAAAGAGGAGGTGAAGGCGCTCCAGAAGCACGTCTCCGAGAC
GGTGGGCTGCTTCGAGAAGGTCGTGGACAGCGTCACGGGCGGCGTGGGCG
CCACCGTGCTGCTCCAGGAGCGGGGCTGGCGCTTGCAGCGGCTGGTCTGG
CTACTTCTACCACGAAACGAGGTGGGACGATTCCTCGATGAAACGCACGG
CGGCTGGGAGGCCCGGGTCGTCACTGGGCTCTCCAGGCCGACCAACGCGG
CCGGCCCCGGGGGGGGGGGGCGTGTGCTGTGTGTGCGAGTATCACAAGCA
CCAGCTGCAGCAAGCGCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7731:3..2973-

>mRNA_P-wetherbeei_contig7731.1.1 ID=mRNA_P-wetherbeei_contig7731.1.1|Name=mRNA_P-wetherbeei_contig7731.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig7731:3..2973- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCCAACTCGCTGCGGCTGATGCTCATCAACTTGGACTCTTGCGC
CGCCATCCTGGGCGGCGCTGCCATCGGCGCCGGCAGCGACAGCCTGGCCG
AAGTTCTCGGCACCGCGTTCCCGTCGTGGGACGGTGGCAGCCACGGCTAT
ACCACCTGCCACCTGTGCCCGGAGCGCGCGATCGCGGAGTGGAACTGCCG
CGCGCCGCACCCGCCTGACACCGCGGTGGACGTTTGGGCGCTGGGCATGG
TGCTCCATTGGCCGCACACCGGCCAGGATTATCTTAGGTCGGCGGCAGAA
GACGGCACCGTCCTGCGGCAGCTCTGCGACCCGTCGTTAAGGGTCGGTCG
AAGTGTGGCTGGACGGCACCAGCGACCGGTCGTACGTTGTCGAGGCGTTG
CACACCATGCTGAGGCCGAATCCGATGCGGCGTGGGGAGATCAGTCAGAT
TAA
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