mRNA_P-wetherbeei_contig7730.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7730.1.2
Unique NamemRNA_P-wetherbeei_contig7730.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7730.1.2 vs. uniprot
Match: D7FSV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.170e-11
Identity = 161/437 (36.84%), Postives = 201/437 (46.00%), Query Frame = 1 
Query:    1 EFWTTTCKRCPEALSPLDRAAASAAAVTAASTHAPGCDGAAAPVNSSSAGGGSGRRVRHYCVDAENRARAKAQLDINSVPFTVVLGKDGTVMAAGGPGAVDV----SKAARLLADPVGAANAVSAAAXXXXXXXXXEQPGAAVAPVLRPTKPETLAKPAGGVIGGTAVVPSGSMAPDD--SCEGGVCKLMRRPKPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAPKVVCDGDVCRLVRRPKPAAAAAASAPALSVAPAXXXXXXXXXPLQPINSAAAVVASNAPQVVCEGDVCKLVRPKPAAAATATALPAARAHGTPPAPVLGVGDIMPGVAVVDVATGTAVDWSSVAPDGRTLVLDFWTTRCTRCPAALDKXXXXXXXXXXXXXXXXXXXXXXXXXXGGGSVVYVSLNLDSLEGARAIIGRG 1293
            +FWTT C  CP AL  LD  A    +VT  + +      AA  + S +A  G    + H  ++ + + RAK  L + +VPF VV+ +DG V+  G    + +    S  + LL  P GA +A   A          ++  AA A    P   ET A  +    GG    P G   P     C G VCKL+R+PK + XXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXX     V CDG VC+LVRRPK  A   +   +++    XXXXXXXXX                                                                + VV +  G+A     V   G   VLDFWTTRC RCPAALD     XXXXXXXX              G  +V Y+S+NLDSLEGA+ I+ +G
Sbjct:   47 DFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSS-AARELVSQAASEGRWTSLAHVHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSAT--AREGRYGEGQQDENDAAAANAAAPPGEETAAAGSPTAEGG----PRGKATPSPLMECVGDVCKLVRKPKAAXXXXXXXXXXXXXXTGETXXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRRPKKTAEQESKDGSVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXLQVVPIDGGSATTLDDVRAGGPA-VLDFWTTRCVRCPAALDALEGLXXXXXXXXT-------------GDDAVTYISVNLDSLEGAQEIVSKG 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7730.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSV7_ECTSI3.170e-1136.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7730contigP-wetherbeei_contig7730:288..2387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSV7
Model size1296
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.19e-12
EggNOG OGs2D0Q2@1|root,2SEYE@2759|Eukaryota
Cds size1296
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7730.1.2prot_P-wetherbeei_contig7730.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7730 288..2387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.6459594-CDS-P-wetherbeei_contig7730:287..4901683186997.6459594-CDS-P-wetherbeei_contig7730:287..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 288..490 -
1683186997.6575558-CDS-P-wetherbeei_contig7730:813..9491683186997.6575558-CDS-P-wetherbeei_contig7730:813..949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 814..949 -
1683186997.6677494-CDS-P-wetherbeei_contig7730:1012..15421683186997.6677494-CDS-P-wetherbeei_contig7730:1012..1542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 1013..1542 -
1683186997.6781821-CDS-P-wetherbeei_contig7730:1581..17471683186997.6781821-CDS-P-wetherbeei_contig7730:1581..1747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 1582..1747 -
1683186997.6883419-CDS-P-wetherbeei_contig7730:2018..22101683186997.6883419-CDS-P-wetherbeei_contig7730:2018..2210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 2019..2210 -
1683186997.702428-CDS-P-wetherbeei_contig7730:2318..23871683186997.702428-CDS-P-wetherbeei_contig7730:2318..2387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7730 2319..2387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7730.1.2

>prot_P-wetherbeei_contig7730.1.2 ID=prot_P-wetherbeei_contig7730.1.2|Name=mRNA_P-wetherbeei_contig7730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=432bp
EFWTTTCKRCPEALSPLDRAAASAAAVTAASTHAPGCDGAAAPVNSSSAG
GGSGRRVRHYCVDAENRARAKAQLDINSVPFTVVLGKDGTVMAAGGPGAV
DVSKAARLLADPVGAANAVSAAAVGAATASNGEQPGAAVAPVLRPTKPET
LAKPAGGVIGGTAVVPSGSMAPDDSCEGGVCKLMRRPKPSAAAAAPPSSP
PPAAPVPVPQQPAAAPAAAAAAAGGAASASAPKVVCDGDVCRLVRRPKPA
AAAAASAPALSVAPASAAPAAAAAPLQPINSAAAVVASNAPQVVCEGDVC
KLVRPKPAAAATATALPAARAHGTPPAPVLGVGDIMPGVAVVDVATGTAV
DWSSVAPDGRTLVLDFWTTRCTRCPAALDKLEERASCAAAAAITATGGSG
ADGATGGGGSVVYVSLNLDSLEGARAIIGRG*
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mRNA from alignment at P-wetherbeei_contig7730:288..2387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7730.1.2 ID=mRNA_P-wetherbeei_contig7730.1.2|Name=mRNA_P-wetherbeei_contig7730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2100bp|location=Sequence derived from alignment at P-wetherbeei_contig7730:288..2387- (Phaeothamnion wetherbeei SAG_119_79)
GAGTTCTGGACGACCACGTGCAAGCGCTGCCCCGAGGCGCTTAGCCCTCT
CGACCGCGCCGCCGCCTCGGTCGCCGGCGCCGACGCTGGTGCCGACGCCG
ACGGCACGTCAACCCCGGTCCGCTTCGTGGCAATCAACCTCGACGACCGC
GGCGCCGCCGCCGCAATCGTCGGCAAGGCTGCCGCCGTCACAGCCGCCAG
CACGCACGCACCTGGCTGCGACGGCGCCGCTGCACCCGTCAACAGCAGCA
GCGCCGGCGGCGGCAGCGGACGCCGGGTACGCCATTACTGCGTCGATGCA
GAGAACCGGGCGCGGGCCAAGGCGCAGCTCGACATCAATTCTGTGCCATT
TACCGTCGTTCTCGGCAAGGTCGGTCCAGAGGACGACGAGAGAGTTGGAT
TTCTTTGGTTGCTTTCGATGCGATGCTCCCTTTACTGCCTCTGTTGTGTT
CCTGGGTTATATCTTTTGGTTGCGGATGTTTTTAGTAGCCCAGACACCTA
GCCTTCTCTGTCGATTCACCATCAGAGCGGCGACAACGACGAAACGATGC
TCTCACTCTTTAAAGGGCAAGTAGGATGTGAGGTGTCCGCCCACATTTCT
GAACATCTTCTCCTTTTTTCTTGCCATCGGCCTCATGCAGGACGGCACGG
TGATGGCGGCCGGCGGACCGGGAGCCGTCGACGTCTCAAAGGCGGCACGG
CTGCTTGCCGACCCCGTCGGGGCCGCGAACGCGGTCTCTGCAGCGGCGGT
GGGGGCGGCGACGGCGAGCAACGGCGAGCAGCCAGGAGCCGCTGTCGCCC
CTGTCCGTCGATCAGAGCGCTGCCTGGGGGAGCTGTGCCCTCTAGTACGG
CCGACCAAGCCGGAAACGCTGGCAAAGCCTGCTGGAGGCGTCATAGGTGG
GACGGCTGTTGTGCCCTCGGGCTCCATGGCGCCGGATGACAGCTGTGAGG
GCGGCGTCTGCAAGCTGATGCGCCGCCCCAAGCCTTCCGCCGCGGCGGCC
GCTCCGCCGTCGTCGCCGCCGCCAGCAGCGCCAGTTCCGGTGCCTCAGCA
ACCTGCCGCCGCTCCAGCTGCCGCCGCCGCCGCCGCAGGTGGCGCTGCAT
CAGCCAGCGCGCCGAAAGTGGTGTGTGACGGTGACGTCTGCAGGCTGGTG
CGCCGCCCCAAGCCTGCCGCCGCTGCAGCGGCGTCTGCGCCGGCGCTATC
GGTAGCTCCCGCGTCGGCGGCTCCGGCAGCCGCGGCGGCGCCCCTGCAGC
CCATCAACAGCGCAGCGGCGGTGGTGGCCTCCAATGCACCCCAAGTAGTG
TGCGAAGGCGACGTCTGCAAGCTGGTGCGGCCCAAGCCTGCCGCCGCCGC
CACGGCGACGGCATTGCCAGCGGCTGTGCCGGCAGCTGCGGCGGCGGCGG
CCGCTGCGGCGACGGGGCAGGAGAATGTGGCACCGGAGCGGGCCCACGGG
ACGCCGCCGGCGCCCGTGCTGGGCGTTGGTGATATCATGCCTGGCGTCGC
CGTCGTTGACGTTGCAACGGGGACGGCCGTCGACTGGAGCTCCGTGGCGC
CCGACGGCCGCACCCTCGTCCTGGGTGGGCGAACCTCCTTGTTGGTTTGG
TTGAGTTACTTGCAGCTGTCATGCTGGAAGGGGTTGTGGCCGGCAGTTGT
GTAGGGATACTATTTCACGTGGAAAAGGCTTCTTTGATCTTTTACATGCT
TGACTGTCGACTCTGCGGCGCAGGAAAGTCCCGTTTGGTTCGTCTGGCTT
TTGGTTCCTTCAAAAGCTCATTGCGTCTCCTTTTTTGTTTCAGTGATGCA
CTCCATCGTCGCCGGATCCCATTCTCACCGCCGCTCCCGCTGCGCCTTCT
GTCGGCTGCCGCGCCTTCCTCCCTGTCCCCGTCGCCGTGCCCGGCAGACT
TTTGGACGACCCGCTGCACGCGCTGCCCAGCCGCTCTCGACAAGCTCGAG
GAGCGGGCAAGCTGCGCCGCCGCAGCCGCTATCACGGCCACCGGCGGTAG
CGGCGCCGACGGCGCCACCGGTGGCGGTGGCTCGGTCGTTTACGTGTCGT
TGAACCTCGACAGCCTCGAGGGCGCCAGGGCCATCATCGGCAGAGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7730:288..2387-

>mRNA_P-wetherbeei_contig7730.1.2 ID=mRNA_P-wetherbeei_contig7730.1.2|Name=mRNA_P-wetherbeei_contig7730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig7730:288..2387- (Phaeothamnion wetherbeei SAG_119_79)
GAGTTCTGGACGACCACGTGCAAGCGCTGCCCCGAGGCGCTTAGCCCTCT
CGACCGCGCCGCCGCCTCGGCTGCCGCCGTCACAGCCGCCAGCACGCACG
CACCTGGCTGCGACGGCGCCGCTGCACCCGTCAACAGCAGCAGCGCCGGC
GGCGGCAGCGGACGCCGGGTACGCCATTACTGCGTCGATGCAGAGAACCG
GGCGCGGGCCAAGGCGCAGCTCGACATCAATTCTGTGCCATTTACCGTCG
TTCTCGGCAAGGACGGCACGGTGATGGCGGCCGGCGGACCGGGAGCCGTC
GACGTCTCAAAGGCGGCACGGCTGCTTGCCGACCCCGTCGGGGCCGCGAA
CGCGGTCTCTGCAGCGGCGGTGGGGGCGGCGACGGCGAGCAACGGCGAGC
AGCCAGGAGCCGCTGTCGCCCCTGTCCTACGGCCGACCAAGCCGGAAACG
CTGGCAAAGCCTGCTGGAGGCGTCATAGGTGGGACGGCTGTTGTGCCCTC
GGGCTCCATGGCGCCGGATGACAGCTGTGAGGGCGGCGTCTGCAAGCTGA
TGCGCCGCCCCAAGCCTTCCGCCGCGGCGGCCGCTCCGCCGTCGTCGCCG
CCGCCAGCAGCGCCAGTTCCGGTGCCTCAGCAACCTGCCGCCGCTCCAGC
TGCCGCCGCCGCCGCCGCAGGTGGCGCTGCATCAGCCAGCGCGCCGAAAG
TGGTGTGTGACGGTGACGTCTGCAGGCTGGTGCGCCGCCCCAAGCCTGCC
GCCGCTGCAGCGGCGTCTGCGCCGGCGCTATCGGTAGCTCCCGCGTCGGC
GGCTCCGGCAGCCGCGGCGGCGCCCCTGCAGCCCATCAACAGCGCAGCGG
CGGTGGTGGCCTCCAATGCACCCCAAGTAGTGTGCGAAGGCGACGTCTGC
AAGCTGGTGCGGCCCAAGCCTGCCGCCGCCGCCACGGCGACGGCATTGCC
AGCGGCTCGGGCCCACGGGACGCCGCCGGCGCCCGTGCTGGGCGTTGGTG
ATATCATGCCTGGCGTCGCCGTCGTTGACGTTGCAACGGGGACGGCCGTC
GACTGGAGCTCCGTGGCGCCCGACGGCCGCACCCTCGTCCTGGACTTTTG
GACGACCCGCTGCACGCGCTGCCCAGCCGCTCTCGACAAGCTCGAGGAGC
GGGCAAGCTGCGCCGCCGCAGCCGCTATCACGGCCACCGGCGGTAGCGGC
GCCGACGGCGCCACCGGTGGCGGTGGCTCGGTCGTTTACGTGTCGTTGAA
CCTCGACAGCCTCGAGGGCGCCAGGGCCATCATCGGCAGAGGGTGA
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