mRNA_P-wetherbeei_contig7729.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7729.3.1
Unique NamemRNA_P-wetherbeei_contig7729.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI001EF32C0B (peptidoglycan-binding protein n=2 Tax=unclassified Candidatus Nitrotoga TaxID=2647919 RepID=UPI001EF32C0B)

HSP 1 Score: 195 bits (496), Expect = 6.770e-58
Identity = 112/238 (47.06%), Postives = 144/238 (60.50%), Query Frame = 1
Query:   13 AVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGD-GDLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVN 723
            A +   L  YLP L AR  KL+ ++ L NLLRA+AD  VMR  QD FF   Y +PA     +LK+T PL   + YD  VHGSW+++ +RT +  G I   NE+ W++ Y+A+RRA+LA     DL  TVYRMD  + LI+ D W L +PLVVRG EIS  TL A P G YDGP  G+R L     L  G DVR +QL LS    G DI ADG FG+ + + +  +Q +  LPV GVV+
Sbjct:   66 ARFGTRLAPYLPRLAARDLKLDKESKLHNLLRASADDNVMRDTQDTFFDDAYWQPAARAAERLKITSPLGVAVVYDSFVHGSWRSMRNRTIQQVGDIPSCNEQKWIAAYIAIRRAWLAKSSRADLRATVYRMDTFQRLIDQDYWGLELPLVVRGQEISSVTLTATPRGCYDGPQPGTRSLALQSPLQRGLDVRLLQLGLSDR--GVDIKADGIFGQTSLRLIKEYQYTHNLPVTGVVD 301          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI00145DB6F8 (peptidoglycan-binding protein n=1 Tax=Aromatoleum diolicum TaxID=75796 RepID=UPI00145DB6F8)

HSP 1 Score: 195 bits (496), Expect = 8.010e-58
Identity = 112/247 (45.34%), Postives = 144/247 (58.30%), Query Frame = 1
Query:   13 AVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAA-GDGDLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVLQA 750
            A +   L  YLP   A    L++D  L NLLRA+AD PVMR +QD FF  HY +PA     +  ++ PL   + YD  VHG+WK + DR     G +    E+ W+  YVA RRA+LA     DL  T YRMD  + LI+   W+L +PLVVRG EISPA+LAA P G YDGP  GSR L     +  G DVRRVQ+ LS    G DI ADG FG+ + + + A+Q ++GLP  GV + A +  L A
Sbjct:   66 AAFGPLLSRYLPRFDACDTALDHDGALHNLLRASADDPVMRDMQDAFFDEHYWQPAMRAASREGVSSPLGAAVVYDSFVHGAWKAMRDRCNARVGSLASVGEQRWIENYVATRRAWLAGHARSDLRPTAYRMDAFQRLIDQGFWNLELPLVVRGQEISPASLAALPPGCYDGPPPGSRVLAVQSPIQRGLDVRRVQVGLSLR--GVDIKADGLFGQTSARCIKAWQAAKGLPATGVADVALVAQLCA 310          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: A0A1H6WSC8_9GAMM (Chitosanase n=1 Tax=Azotobacter beijerinckii TaxID=170623 RepID=A0A1H6WSC8_9GAMM)

HSP 1 Score: 194 bits (492), Expect = 2.700e-57
Identity = 113/251 (45.02%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 SAPNAVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDG-DLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVLQA 750
            S P A +   L  YLP   A+  +L+ D +L NLLRA+AD PVMR  QD FF + Y + A     +  +T PL   + YD  VHGSWK+I DRT + +G++    E+ W+  YV  RR +LA     DL  TVYRM+  + LI+ D W L +PLVVRG EIS  TL A P G YDGP  GSR L     L  G DVR VQL LS   +G DI  DG FG+ + + +  +Q S+GLP  GV + A +  L A
Sbjct:   62 SNPGARFGVKLSPYLPRFAAKDLRLDGDRHLHNLLRASADDPVMRETQDVFFDLVYWQVAERVAGQFGITSPLGMAVVYDSTVHGSWKSIRDRTVQQSGQLAALGEQGWIGAYVQTRRQWLATHQRRDLRPTVYRMEAFQRLIDQDCWGLELPLVVRGLEISTTTLNATPPGCYDGPQPGSRTLALQASLARGLDVRLVQLGLSA--LGIDIKTDGIFGQRSARCIKDYQASQGLPATGVADAALIARLVA 310          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI001ACC4694 (Chitosanase n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI001ACC4694)

HSP 1 Score: 192 bits (488), Expect = 5.690e-56
Identity = 116/247 (46.96%), Postives = 139/247 (56.28%), Query Frame = 1
Query:    7 PNAVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGD-GDLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVL 744
            P A +   L+  LP   A+   L++DT L NLLRA AD  VMR +QD FF   Y +PA     +  +  PL   + YDG VHGSW  I D      G +    E  W+S YV  RRA+LA     DL  TVYRMD +R LI+ D W LA+PLVVRG EIS   LAA P G YDGP  G+R +     L  G DVR VQL LS    G DI ADG FG  + + V AFQ +RGLPV GV + A +  L
Sbjct:  124 PGARFGARLQPQLPRFAAKDLTLDHDTRLHNLLRACADDRVMRELQDSFFDEAYWRPALRGAERAGIHTPLGVAVVYDGHVHGSWGKIRDSVDSQFGTVPAIGEEAWVSAYVETRRAWLADSPRADLRTTVYRMDALRRLIDLDQWGLALPLVVRGREISADALAAAPPGCYDGPQPGARAIALQQPLARGLDVRLVQLGLSDR--GMDIRADGVFGPGSSRTVKAFQVARGLPVTGVADIALISSL 368          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: A0A328P765_9GAMM (Chitosanase n=2 Tax=Dyella TaxID=231454 RepID=A0A328P765_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 2.410e-55
Identity = 114/245 (46.53%), Postives = 137/245 (55.92%), Query Frame = 1
Query:   13 AVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAG-DGDLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVL 744
            A +  AL  Y+  L      L+ D YL NLLRA AD PVMR  QD+FF   Y  PA     KL +T PL   + YD  VHGSW  + D TT+  G I    E+ W+S YV  RRA+LA   +  L  TVYRMD ++ LIE   W L +PLVVRG EIS AT+ A P G +DGP SGSR L     L+ G DVR VQL LSR     DI ADG FG+ T   + A+Q    LP  GV +   +  L
Sbjct:   66 ARFSAALNPYIQPLVNCDLGLDDDKYLHNLLRATADDPVMRDTQDQFFDDVYWAPAQRAATKLGITLPLGMAVVYDSTVHGSWPRLRDSTTQQAGDIQALGEKAWISAYVDTRRAWLANNANASLRPTVYRMDALKRLIELGQWGLELPLVVRGSEISVATMNATPTGCFDGPVSGSRSLSLATPLVRGMDVRLVQLNLSRDQP--DIKADGIFGRGTADGIKAYQARNQLPATGVADTTLIAKL 308          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI00187A13A2 (peptidoglycan-binding protein n=1 Tax=Ramlibacter sp. HM2 TaxID=2780087 RepID=UPI00187A13A2)

HSP 1 Score: 189 bits (479), Expect = 1.160e-54
Identity = 113/239 (47.28%), Postives = 141/239 (59.00%), Query Frame = 1
Query:   31 LKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDGDLPK-TVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVL 744
            L+A+LP L AR   ++ D  L NLLRA AD PVMR VQD+FF   Y +PA     +L +  PL   + YD  VHGSW  + DR +   G +    E  W+  +V LRR +L      L + TVYRMD    LIE D+W L +PLVVRG EISPA+L+A P G Y+GP  GSR+L     L+ G DVR VQLALS    G D+ ADG FG  T +FV A Q +  LP NGV + A +  L
Sbjct:  129 LRAWLPALAARSAAVDTDGKLHNLLRACADDPVMRDVQDDFFDETYWQPALRAASRLGIRSPLGVAVVYDSWVHGSWAPLRDRASAG-GALQQVGEHEWVQRFVRLRREWLGTHPNALLRQTVYRMDAFLRLIEQDAWGLPLPLVVRGQEISPASLSALPPGCYNGPQPGSRELSVQSPLLRGLDVRLVQLALSDQ--GCDLRADGIFGTATARFVTALQRTHELPENGVADAALIHRL 364          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI00164E7C61 (peptidoglycan-binding protein n=1 Tax=Ramlibacter sp. USB13 TaxID=2764187 RepID=UPI00164E7C61)

HSP 1 Score: 186 bits (472), Expect = 1.290e-53
Identity = 112/239 (46.86%), Postives = 137/239 (57.32%), Query Frame = 1
Query:   31 LKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDGDLPK-TVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVL 744
            L+A+LP L +R    + D  L NLLRA AD PVMR VQD FF   Y +PA     ++ +  PL   + YD  VHGSW  + DRTT   G +    E  W+  YV  RR +LA     L + TVYRMD  + LI  D+W L +PLVVRG EIS ATL+A P G YDGP  G+RDL     L  G DVR VQLALS    G D+ ADG FG  T +F+ AFQ +  LP  GV +   +  L
Sbjct:  129 LRAWLPALASRSAAADTDLKLHNLLRACADDPVMRDVQDAFFDEVYWEPAVRAATRMGIRSPLGIAVVYDSWVHGSWGLLRDRTTSA-GALQQVGEHEWIQRYVRTRREWLATHPNALLRQTVYRMDAFQRLIALDAWGLPLPLVVRGEEISLATLSALPPGCYDGPQPGTRDLAVRTPLQRGLDVRLVQLALSDQ--GCDVRADGIFGNGTARFIRAFQRTSELPETGVADAGVIHRL 364          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: A0A0Q7S265_9BURK (Chitosanase n=2 Tax=Pelomonas sp. Root1444 TaxID=1736464 RepID=A0A0Q7S265_9BURK)

HSP 1 Score: 186 bits (472), Expect = 1.780e-53
Identity = 112/249 (44.98%), Postives = 143/249 (57.43%), Query Frame = 1
Query:    7 PNAVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDGDL-PKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVLQA 750
            P A + + L AYLP LQA    L+ D  LKN LRA+AD PVMR VQD FF   Y + A     ++ L  PL   + YD QVHGSW  + DRT    G    A ER+W+  YV  RR++LA     L  KTVYRMD M+ L++  +W L +PLVV+G EIS ATL+  P G +DGP  GSR L     ++ G DVR VQ+ LS    G+D+ AD  FG      + A+Q   GLP+ G +  AT+  L A
Sbjct:  135 PAARWASRLVAYLPRLQALDVALDGDELLKNFLRASADDPVMRDVQDRFFDEIYWQAAERAAARVGLRLPLGLAVVYDSQVHGSWALLRDRTLAAIGSPGQAGERDWLRRYVEERRSWLANHSNPLLRKTVYRMDTMQRLMDLGAWALELPLVVQGQEISMATLSGSPPGCWDGPLPGSRPLALQQPMLKGLDVRLVQVGLSEH--GFDVRADALFGAGLRNAILAWQMREGLPLTGTLEAATVLALAA 381          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: UPI001911F4F6 (peptidoglycan-binding protein n=1 Tax=Ramlibacter ginsenosidimutans TaxID=502333 RepID=UPI001911F4F6)

HSP 1 Score: 185 bits (469), Expect = 3.600e-53
Identity = 116/247 (46.96%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   13 AVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDGDLPK-TVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVLQA 750
            A +   L+A+LP L AR    + D  L N+LRA+AD PVMR VQD FF   Y  PA     +L +  PL   + YD  VHGSW  + DRT    G +    E  W+  YV  RR +LA     L + TVYRMD  + LI  D+W LA+PLVVRG EIS A+LAA P G YDGP  G+R L     L  G DVR VQLALS    G D+ ADG FG  + Q V AFQ    LP   V + ATL  L A
Sbjct:  123 ARFGERLRAWLPALAARSAAADTDLKLHNVLRASADDPVMRDVQDAFFDDAYWNPALRAATRLGIRSPLGVAVVYDSWVHGSWALLRDRTMAD-GTVQQLGEPEWIQRYVRTRRDWLATHPNALLRQTVYRMDAFQRLIAQDAWGLALPLVVRGAEISLASLAALPPGCYDGPQPGTRVLSVQAPLQRGLDVRLVQLALSDQ--GCDVRADGIFGNASAQLVRAFQRGNELPETAVADAATLQRLLA 366          
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Match: A0A1G9ZZC6_9PSED (Chitosanase n=1 Tax=Pseudomonas jinjuensis TaxID=198616 RepID=A0A1G9ZZC6_9PSED)

HSP 1 Score: 182 bits (462), Expect = 8.520e-53
Identity = 109/238 (45.80%), Postives = 135/238 (56.72%), Query Frame = 1
Query:    7 PNAVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDEFFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGKITPANERNWMSTYVALRRAFLAAGDG-DLPKTVYRMDVMRGLIEADSWDLAMPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQLALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGV 717
            P A +   L  +L    AR  KL+ D  L N+LRA+AD PVMR  QD+FF   Y + A     +L    PL   + YD  VHGSWK I DR    +G +    E+ W++ YVA RR +LA     DL  TVYRMD ++ LI+ D W L +PLVVRG EIS ATL A P G YDGP  G+R L     L  G DVR +QL LS    G +I ADG +G+ +   V  FQ S+GLP  GV
Sbjct:   64 PGARFGARLTPFLAKFAARDLKLDRDAKLHNILRASADDPVMRETQDQFFDQVYWQAAERAATQLGAGTPLGVAVVYDSTVHGSWKLIRDRVNAASGSLAKLGEKKWIAAYVAARRDWLATHPRKDLRPTVYRMDALQRLIDLDHWGLELPLVVRGQEISSATLNATPPGCYDGPQPGTRPLALQTPLARGLDVRLLQLGLSER--GVEIKADGVYGQASVSRVKDFQRSQGLPATGV 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7729.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EF32C0B6.770e-5847.06peptidoglycan-binding protein n=2 Tax=unclassified... [more]
UPI00145DB6F88.010e-5845.34peptidoglycan-binding protein n=1 Tax=Aromatoleum ... [more]
A0A1H6WSC8_9GAMM2.700e-5745.02Chitosanase n=1 Tax=Azotobacter beijerinckii TaxID... [more]
UPI001ACC46945.690e-5646.96Chitosanase n=1 Tax=Burkholderiaceae bacterium Tax... [more]
A0A328P765_9GAMM2.410e-5546.53Chitosanase n=2 Tax=Dyella TaxID=231454 RepID=A0A3... [more]
UPI00187A13A21.160e-5447.28peptidoglycan-binding protein n=1 Tax=Ramlibacter ... [more]
UPI00164E7C611.290e-5346.86peptidoglycan-binding protein n=1 Tax=Ramlibacter ... [more]
A0A0Q7S265_9BURK1.780e-5344.98Chitosanase n=2 Tax=Pelomonas sp. Root1444 TaxID=1... [more]
UPI001911F4F63.600e-5346.96peptidoglycan-binding protein n=1 Tax=Ramlibacter ... [more]
A0A1G9ZZC6_9PSED8.520e-5345.80Chitosanase n=1 Tax=Pseudomonas jinjuensis TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7729contigP-wetherbeei_contig7729:2240..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog85643.Tmz1t_3574
PFAMsGlyco_hydro_46,PG_binding_1
Model size753
Max annot lvl206389|Rhodocyclales
KEGG koko:K01233
KEGG ReactionR02833
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.74e-52
EggNOG OGsCOG3409@1|root,COG3409@2|Bacteria,1NEG1@1224|Proteobacteria,2VV5Y@28216|Betaproteobacteria,2KXXE@206389|Rhodocyclales
EC3.2.1.132
DescriptionGlycosyl hydrolase family 46
Cds size753
COG categoryM
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.47697-CDS-P-wetherbeei_contig7729:2239..29921683186997.47697-CDS-P-wetherbeei_contig7729:2239..2992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7729 2240..2992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7729.3.1prot_P-wetherbeei_contig7729.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7729 2240..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7729.3.1

>prot_P-wetherbeei_contig7729.3.1 ID=prot_P-wetherbeei_contig7729.3.1|Name=mRNA_P-wetherbeei_contig7729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
SAPNAVYKNALKAYLPDLQARHPKLNYDTYLKNLLRAAADGPVMRAVQDE
FFAVHYRKPAFDDGVKLKLTQPLSWCIRYDGQVHGSWKTIADRTTETTGK
ITPANERNWMSTYVALRRAFLAAGDGDLPKTVYRMDVMRGLIEADSWDLA
MPLVVRGFEISPATLAAPPAGIYDGPASGSRDLRSGPQLMVGQDVRRVQL
ALSRPWIGYDIGADGKFGKVTGQFVAAFQTSRGLPVNGVVNKATLDVLQA
*
back to top

mRNA from alignment at P-wetherbeei_contig7729:2240..2992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7729.3.1 ID=mRNA_P-wetherbeei_contig7729.3.1|Name=mRNA_P-wetherbeei_contig7729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig7729:2240..2992- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCTCCGAATGCGGTCTACAAGAACGCCTTGAAGGCCTACCTGCCGGA CCTGCAAGCGCGCCACCCGAAGCTCAACTACGACACCTATTTGAAGAACC TGTTGCGCGCGGCGGCCGATGGTCCGGTCATGCGCGCGGTCCAGGACGAA TTCTTCGCCGTCCACTATCGCAAGCCCGCGTTCGACGATGGCGTGAAGCT CAAGCTCACCCAGCCCCTGTCCTGGTGCATCCGCTACGACGGCCAAGTGC ACGGCTCATGGAAAACCATCGCGGATCGCACCACCGAAACAACGGGAAAG ATCACGCCCGCGAACGAGCGCAATTGGATGTCAACCTACGTCGCGCTTCG CCGCGCCTTCCTGGCGGCCGGCGACGGCGACCTTCCGAAAACGGTTTACC GCATGGACGTCATGCGCGGATTGATCGAGGCCGATTCCTGGGACCTCGCC ATGCCGCTGGTGGTCCGCGGCTTTGAGATCAGTCCGGCAACGCTGGCGGC CCCGCCGGCCGGAATCTATGACGGGCCTGCCTCGGGCAGCCGCGACCTGC GATCCGGCCCACAACTGATGGTGGGACAGGATGTCAGGCGCGTTCAGCTT GCGCTGAGCCGCCCGTGGATCGGCTACGACATCGGGGCGGACGGCAAATT CGGCAAGGTCACCGGGCAGTTCGTCGCCGCGTTTCAAACCTCGCGTGGCT TGCCGGTGAACGGCGTCGTCAACAAAGCGACGCTCGATGTGCTGCAAGCC TGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7729:2240..2992-

>mRNA_P-wetherbeei_contig7729.3.1 ID=mRNA_P-wetherbeei_contig7729.3.1|Name=mRNA_P-wetherbeei_contig7729.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig7729:2240..2992- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCTCCGAATGCGGTCTACAAGAACGCCTTGAAGGCCTACCTGCCGGA
CCTGCAAGCGCGCCACCCGAAGCTCAACTACGACACCTATTTGAAGAACC
TGTTGCGCGCGGCGGCCGATGGTCCGGTCATGCGCGCGGTCCAGGACGAA
TTCTTCGCCGTCCACTATCGCAAGCCCGCGTTCGACGATGGCGTGAAGCT
CAAGCTCACCCAGCCCCTGTCCTGGTGCATCCGCTACGACGGCCAAGTGC
ACGGCTCATGGAAAACCATCGCGGATCGCACCACCGAAACAACGGGAAAG
ATCACGCCCGCGAACGAGCGCAATTGGATGTCAACCTACGTCGCGCTTCG
CCGCGCCTTCCTGGCGGCCGGCGACGGCGACCTTCCGAAAACGGTTTACC
GCATGGACGTCATGCGCGGATTGATCGAGGCCGATTCCTGGGACCTCGCC
ATGCCGCTGGTGGTCCGCGGCTTTGAGATCAGTCCGGCAACGCTGGCGGC
CCCGCCGGCCGGAATCTATGACGGGCCTGCCTCGGGCAGCCGCGACCTGC
GATCCGGCCCACAACTGATGGTGGGACAGGATGTCAGGCGCGTTCAGCTT
GCGCTGAGCCGCCCGTGGATCGGCTACGACATCGGGGCGGACGGCAAATT
CGGCAAGGTCACCGGGCAGTTCGTCGCCGCGTTTCAAACCTCGCGTGGCT
TGCCGGTGAACGGCGTCGTCAACAAAGCGACGCTCGATGTGCTGCAAGCC
TGA
back to top