mRNA_P-wetherbeei_contig7725.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7725.1.1
Unique NamemRNA_P-wetherbeei_contig7725.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7725.1.1 vs. uniprot
Match: A0A6H5KAI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.850e-21
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 RTLRTIMAMWVGQGLREVFGDWRQWARRRASQRRRDVRAAVRQAWHDFDAANVAVQLAEWKRGKWGERKWDEYQDAWFWVHADTQEAR 264
            R  R IMAMW+G G+RE F +W+ W ++R SQRR+D R A+R+AWH+++AA V   +AEWK   W E ++D Y D   W H +T + R
Sbjct:  484 RVFRRIMAMWLGVGMRESFAEWKIWTKKRISQRRKDARKALREAWHNYEAAGVVSVMAEWKASFW-EEEYDIYTDTQTWRHKETGDVR 570
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BLAST of mRNA_P-wetherbeei_contig7725.1.1 vs. uniprot
Match: D8LMJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ1_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.220e-19
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   10 RTIMAMWVGQGLREVFGDWRQWARRRASQRRRDVRAAVRQAWHDFDAANVAVQLAEWKRGKWGERKWDEYQDAWFWVH 243
            R IMAMW+G G+RE F +W+ W ++R SQRR+D R A+R+AWHD++AA V   +AEWK   W E ++D Y D   W H
Sbjct:  771 RRIMAMWLGVGMRESFAEWKIWTKKRISQRRKDARKALREAWHDYEAAGVVSVMAEWKASFW-EEEYDIYTDTQTWRH 847
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAI0_9PHAE3.850e-2147.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMJ1_ECTSI2.220e-1951.28Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7725contigP-wetherbeei_contig7725:2354..2620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMJ1
Preferred nameLRCH1
PFAMsCH,LRR_8
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K09506,ko:K10641
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002683,GO:0002685,GO:0002686,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010033,GO:0016020,GO:0023052,GO:0030334,GO:0030336,GO:0032879,GO:0034097,GO:0034260,GO:0040012,GO:0040013,GO:0042221,GO:0043086,GO:0043087,GO:0044092,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051270,GO:0051271,GO:0051336,GO:0051346,GO:0051716,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071345,GO:0071944,GO:1990868,GO:1990869,GO:2000145,GO:2000146,GO:2000401,GO:2000402,GO:2000404,GO:2000405
Exons1
Evalue4.7e-19
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of response to stimulus
Cds size249
COG categoryU
BRITEko00000,ko01000,ko03009,ko03110,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.1692696-UTR-P-wetherbeei_contig7725:2353..23711683186997.1692696-UTR-P-wetherbeei_contig7725:2353..2371Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7725 2354..2371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.190392-CDS-P-wetherbeei_contig7725:2371..26201683186997.190392-CDS-P-wetherbeei_contig7725:2371..2620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7725 2372..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7725.1.1prot_P-wetherbeei_contig7725.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7725 2372..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7725.1.1

>prot_P-wetherbeei_contig7725.1.1 ID=prot_P-wetherbeei_contig7725.1.1|Name=mRNA_P-wetherbeei_contig7725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MAMWVGQGLREVFGDWRQWARRRASQRRRDVRAAVRQAWHDFDAANVAVQ
LAEWKRGKWGERKWDEYQDAWFWVHADTQEAR*
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mRNA from alignment at P-wetherbeei_contig7725:2354..2620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7725.1.1 ID=mRNA_P-wetherbeei_contig7725.1.1|Name=mRNA_P-wetherbeei_contig7725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig7725:2354..2620+ (Phaeothamnion wetherbeei SAG_119_79)
AGGACGCTGCGCACCATCATGGCCATGTGGGTCGGGCAGGGCCTTCGCGA
GGTTTTTGGCGACTGGCGCCAGTGGGCCCGGCGGCGCGCCTCCCAGCGCC
GCCGCGATGTCCGCGCCGCGGTGCGGCAGGCGTGGCACGACTTCGACGCG
GCAAACGTGGCCGTGCAGCTCGCGGAGTGGAAGCGGGGCAAGTGGGGGGA
GCGGAAGTGGGACGAGTACCAGGACGCATGGTTTTGGGTACACGCCGATA
CACAGGAGGCGCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7725:2354..2620+

>mRNA_P-wetherbeei_contig7725.1.1 ID=mRNA_P-wetherbeei_contig7725.1.1|Name=mRNA_P-wetherbeei_contig7725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig7725:2354..2620+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCATGTGGGTCGGGCAGGGCCTTCGCGAGGTTTTTGGCGACTGGCG
CCAGTGGGCCCGGCGGCGCGCCTCCCAGCGCCGCCGCGATGTCCGCGCCG
CGGTGCGGCAGGCGTGGCACGACTTCGACGCGGCAAACGTGGCCGTGCAG
CTCGCGGAGTGGAAGCGGGGCAAGTGGGGGGAGCGGAAGTGGGACGAGTA
CCAGGACGCATGGTTTTGGGTACACGCCGATACACAGGAGGCGCGGTGA
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