mRNA_P-wetherbeei_contig772.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig772.3.1
Unique NamemRNA_P-wetherbeei_contig772.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig772.3.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.950e-50
Identity = 136/333 (40.84%), Postives = 175/333 (52.55%), Query Frame = 1 
Query:   64 PSHLAVFLWPLRCAWRNEASR----------LSVVFMAPSVARLASALERLGRDEPRLDLSRVFLLPGQPVSQRDLENAGVATAARLCEAEGGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXANCNVRRHVVVELKHESNIRFLHAHDSATIVGTLSDLGG--------DSTYLWPKFAAGAAYLDSALDALLAQAFHRPSRIALLERILRLGVGNGH--PGSARR-------YGGGANGGSGGGTAGIDDEDGDGTAREVGVHMIDVPLELVRYSFGELFQQLAAPPFRAIALGLYRPRGTRQSPEPYVYTGCRADTVLREGDRVYVLGR 981
            PSHL  FL PL+  W   A            + VV +A  V+RL SALE + R    ++ S V+L  G PVS+ DLENAGV TA  +   +   S+                            +     +HVVVEL+  +N+RFLHA   A  +  +  LGG        ++ YLWPKFAAG  Y  S +D++  QAF+RPSRIALL R+L L  G     PG A R        G   +    G + G++   GDG  RE  +  + VP  L+ +SFGE+FQ LAAPP R +A  L R RGTR +PEPYVYTG RADTVL  GDRV++LGR
Sbjct: 1316 PSHLECFLRPLK-GWTGGAGMGGGREVGGGGVPVVLVADDVSRLESALEVVDR-HGYVNTSEVYLFEGSPVSRTDLENAGVRTAKAVLVMKDSKSTRFNYGGSGDPLRDAEALVSFIKMEDGLLSE---DQHVVVELESSANVRFLHARAEAKSLSAIVALGGAGAGGAADEAHYLWPKFAAGMTYNSSFVDSMFGQAFYRPSRIALLNRLLLLARGEQQEQPGMASRSPPQGPNQGETRSPSETGASPGLE---GDGLGRECCLRQMAVPPSLLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGR 1640
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BLAST of mRNA_P-wetherbeei_contig772.3.1 vs. uniprot
Match: A0A6H5L2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.070e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  745 DGDGTAREVGVHMIDVPLELVRYSFGELFQQLAAPPFRAIALGLYRPRGTRQSPEPYVYTGCRADTVLREGDRVYVLGR 981
            +GDG  RE  +  + VP  L+ +SFGE+FQ LAAPP R +A  L R RGTR +PEPYVYTG RADTVL  GDRV++LGR
Sbjct:   54 EGDGLGRECCLRQMAVPPSLLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGR 132
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BLAST of mRNA_P-wetherbeei_contig772.3.1 vs. uniprot
Match: A0A7S1XKF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKF3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.050e-19
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  775 VHMIDVPLELVRYSFGELFQQLAAPPFRAIALGLYRPRGTRQSPEPYVYTGCRADTVLREGDRVYVLG 978
            ++ + VP EL ++S+GEL+Q+L APP   +ALGLYR  GT+ S EPYVYT  RADTVL EGDRV+VLG
Sbjct:   20 IYQMKVPPELYQHSYGELYQELVAPPLNLVALGLYRTAGTKNSVEPYVYTAPRADTVLHEGDRVFVLG 87
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BLAST of mRNA_P-wetherbeei_contig772.3.1 vs. uniprot
Match: UPI000D1C7BD5 (calcium-activated potassium channel subunit alpha-1-like isoform X1 n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7BD5)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-7
Identity = 60/189 (31.75%), Postives = 82/189 (43.39%), Query Frame = 1 
Query:  421 RRHVVVELKHESNIRFLHAHDSATIVG----TLSDLGGDSTYLWPKFAAGAAYLDSALDALLAQAFHRPSRIALLERILRLGVGNGHPGSARRYGGGANGGSGGGTAGIDDEDGDGTAREVGVHMIDVPLELVRYSFGELFQQLAAPPFRAIALGLYRPRGTRQSPEPYVYTGCRADTVLREGDRVYVL 975
            R  V+VEL+ E  ++FL  H     V     TL           P FA G     +A   L    F   + ++++E++           S  R+ G             +DEDGD  +    +  I +P   V  SF +LFQ L     +A+ALGLYRP GT  SP  YV T    DT+L  GD +YVL
Sbjct:  983 RNRVLVELQQEIQLQFLRPHSRNHTVQFQPKTLQRDRDARLQFAPPFAEGKGLCPAAFTFLTYATFFNRNSVSIIEQL-----------SCGRHTG-------------EDEDGDENSIRR-LEQIPIPSCYVGLSFQQLFQGLLHNE-KALALGLYRPVGTHNSPVAYVSTNPAYDTLLHSGDLIYVL 1145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig772.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKC7_ECTSI2.950e-5040.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Y8_9PHAE8.070e-2260.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XKF3_9STRA6.050e-1961.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI000D1C7BD54.000e-731.75calcium-activated potassium channel subunit alpha-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig772contigP-wetherbeei_contig772:6687..8063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FKC7
PFAMsBK_channel_a,Ion_trans,Ion_trans_2,TrkA_N
Model size981
Max annot lvl2759|Eukaryota
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.83e-51
EggNOG OGsKOG1420@1|root,KOG1420@2759|Eukaryota
Descriptionlarge conductance calcium-activated potassium channel activity
Cds size981
COG categoryP
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.0070841-CDS-P-wetherbeei_contig772:6686..69741683186997.0070841-CDS-P-wetherbeei_contig772:6686..6974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig772 6687..6974 +
1683186997.017132-CDS-P-wetherbeei_contig772:7142..76111683186997.017132-CDS-P-wetherbeei_contig772:7142..7611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig772 7143..7611 +
1683186997.025315-CDS-P-wetherbeei_contig772:7839..80631683186997.025315-CDS-P-wetherbeei_contig772:7839..8063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig772 7840..8063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig772.3.1prot_P-wetherbeei_contig772.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig772 6687..8063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig772.3.1

>prot_P-wetherbeei_contig772.3.1 ID=prot_P-wetherbeei_contig772.3.1|Name=mRNA_P-wetherbeei_contig772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MPLTTARHLRGHVVVTGFVPQPSHLAVFLWPLRCAWRNEASRLSVVFMAP
SVARLASALERLGRDEPRLDLSRVFLLPGQPVSQRDLENAGVATAARLCE
AEGGSSSGGGTFVGGGIGSRGGSGGAVGGGGAGGGANCNVRRHVVVELKH
ESNIRFLHAHDSATIVGTLSDLGGDSTYLWPKFAAGAAYLDSALDALLAQ
AFHRPSRIALLERILRLGVGNGHPGSARRYGGGANGGSGGGTAGIDDEDG
DGTAREVGVHMIDVPLELVRYSFGELFQQLAAPPFRAIALGLYRPRGTRQ
SPEPYVYTGCRADTVLREGDRVYVLGR
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mRNA from alignment at P-wetherbeei_contig772:6687..8063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig772.3.1 ID=mRNA_P-wetherbeei_contig772.3.1|Name=mRNA_P-wetherbeei_contig772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1377bp|location=Sequence derived from alignment at P-wetherbeei_contig772:6687..8063+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGACGACGGCACGGCACTTGCGCGGCCACGTGGTGGTGACGGG
CTTTGTGCCGCAGCCGTCGCACCTGGCGGTCTTCCTGTGGCCGCTGCGCT
GTGCCTGGCGCAACGAGGCCTCGCGGCTCTCCGTCGTGTTTATGGCGCCG
AGCGTCGCCCGGCTGGCGTCGGCCCTGGAGCGGCTCGGGCGGGACGAGCC
GCGGCTCGACCTGTCGAGGGTCTTTTTGCTTCCGGGGCAGCCCGTCTCGC
AGCGAGACCTCGAGAACGCTGGAGTCGCCACCGCGGCGGTCGTCCTCTGC
CTGACGGGCTCCCACGCGCTGGAAGGGGACCCGGCGGCATCGGCGGCTGC
GGCGGCAACGACGGCGGACGGCGGCGGCAGAGCGGGGTCGGCCGCGGCCA
ACGACATGGGCGCGATGGCTGATATCGAGACGATGATCGCTTTCACCAAG
CTGCAGCGGCTCTGCGAAGCCGAAGGCGGAAGTAGCAGCGGCGGCGGCAC
ATTTGTCGGCGGCGGAATTGGCAGCCGCGGCGGCAGCGGTGGCGCCGTCG
GCGGCGGTGGCGCTGGCGGCGGCGCCAACTGCAACGTGCGTCGGCACGTC
GTGGTGGAGCTGAAGCACGAGTCCAACATCCGCTTCCTCCACGCCCATGA
CAGTGCCACCATCGTCGGGACGCTCTCTGACCTCGGCGGGGATAGCACGT
ACCTCTGGCCCAAGTTTGCCGCCGGCGCGGCCTACCTGGACTCGGCGCTG
GACGCGCTGCTGGCGCAGGCGTTCCACCGCCCATCGCGAATCGCGCTGCT
GGAGCGCATCCTGCGGCTCGGCGTGGGGAACGGCCACCCTGGGAGTGCGC
GCCGTTACGGCGGCGGGGCCAACGGCGGCAGCGGCGGCGGCACCGCCGGC
ATTGACGATGAGGATGGTGACGGAAGTGCGTGCGACGGCGGAAGCGGCGG
CCGCGCCGGTCGCAGCAGTGGCGGCGGTGGTGGCGCCAATGTGAACCATG
TCGGCGGCGGCAGTGTCGACGACCGCTGCAGTCCGGAGCAAGACGACGGC
GCAATCCCGGACTTCAGCAGCTTCCGCTACTGCGACGAAGACGAGGGCGA
CAGCGTCGGCACGGCGGCGACGGCGGCGACCGCGGTGGCGGCACTGGCCG
AAGCGGCGCGCGAAGTTGGCGTCCACATGATTGACGTGCCTCTGGAGCTG
GTCCGCTACTCATTCGGGGAGCTGTTCCAGCAGCTGGCGGCGCCGCCGTT
CCGGGCCATCGCGCTGGGGCTGTACCGGCCGCGGGGCACGCGGCAGTCGC
CCGAGCCATACGTCTACACAGGGTGCCGCGCCGACACAGTGCTGCGGGAA
GGAGACCGTGTATATGTGCTTGGTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig772:6687..8063+

>mRNA_P-wetherbeei_contig772.3.1 ID=mRNA_P-wetherbeei_contig772.3.1|Name=mRNA_P-wetherbeei_contig772.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig772:6687..8063+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGACGACGGCACGGCACTTGCGCGGCCACGTGGTGGTGACGGG
CTTTGTGCCGCAGCCGTCGCACCTGGCGGTCTTCCTGTGGCCGCTGCGCT
GTGCCTGGCGCAACGAGGCCTCGCGGCTCTCCGTCGTGTTTATGGCGCCG
AGCGTCGCCCGGCTGGCGTCGGCCCTGGAGCGGCTCGGGCGGGACGAGCC
GCGGCTCGACCTGTCGAGGGTCTTTTTGCTTCCGGGGCAGCCCGTCTCGC
AGCGAGACCTCGAGAACGCTGGAGTCGCCACCGCGGCGCGGCTCTGCGAA
GCCGAAGGCGGAAGTAGCAGCGGCGGCGGCACATTTGTCGGCGGCGGAAT
TGGCAGCCGCGGCGGCAGCGGTGGCGCCGTCGGCGGCGGTGGCGCTGGCG
GCGGCGCCAACTGCAACGTGCGTCGGCACGTCGTGGTGGAGCTGAAGCAC
GAGTCCAACATCCGCTTCCTCCACGCCCATGACAGTGCCACCATCGTCGG
GACGCTCTCTGACCTCGGCGGGGATAGCACGTACCTCTGGCCCAAGTTTG
CCGCCGGCGCGGCCTACCTGGACTCGGCGCTGGACGCGCTGCTGGCGCAG
GCGTTCCACCGCCCATCGCGAATCGCGCTGCTGGAGCGCATCCTGCGGCT
CGGCGTGGGGAACGGCCACCCTGGGAGTGCGCGCCGTTACGGCGGCGGGG
CCAACGGCGGCAGCGGCGGCGGCACCGCCGGCATTGACGATGAGGATGGT
GACGGAACGGCGCGCGAAGTTGGCGTCCACATGATTGACGTGCCTCTGGA
GCTGGTCCGCTACTCATTCGGGGAGCTGTTCCAGCAGCTGGCGGCGCCGC
CGTTCCGGGCCATCGCGCTGGGGCTGTACCGGCCGCGGGGCACGCGGCAG
TCGCCCGAGCCATACGTCTACACAGGGTGCCGCGCCGACACAGTGCTGCG
GGAAGGAGACCGTGTATATGTGCTTGGTCGG
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