mRNA_P-wetherbeei_contig7708.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7708.2.1
Unique NamemRNA_P-wetherbeei_contig7708.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.050e-14
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 1020 AAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
            A  LR P A    ++     Q+P+ SPWK P+LR LS +    ++GL + Y++Y SRLLFEL+AD AI  +M++L+PV  VT P  +  QP  F+S  PG
Sbjct:   58 ATHLRSPAARSARVDDRHGPQSPQSSPWKRPMLRALS-THVSAEDGLTVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEKQPVQFVSTRPG 156          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A6H5JHJ8_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.140e-14
Identity = 79/273 (28.94%), Postives = 113/273 (41.39%), Query Frame = 3
Query:  684 LEFAPTIDFDFGEPLPPPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKGRGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIET---KAAKLRRPCAGL----------------------------------------------------------EVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
            L F PTI+ D G  +     +   QA ++AA G   + RL+G   VT+ V         L AA+ V   K     ++ P          GEF++  G+HVPV RLL+ + T    +  +  P +G                                                           ++L+   ALQ+   SPWK P+LR LS        GL + Y++Y SRLLFEL+AD AI  +M++L+PV  VT P  +  QP  F+S  PG
Sbjct:   11 LPFYPTIELDTGAKVKQVPDWLKKQAPEDAATGKEYIGRLMG--KVTLKVACLSAVRTKLLAAHKVNFVK----IQSRPCLVVRTWDQDGEFTSRAGEHVPVCRLLDAVTTGLVTSCAVVAPSSGTTISAAGGKRVGHTAAVGVGTSAAAXXXXXPPANDGCDGGDGTGDVSSAVAASETNEAADLLQHVYALQS---SPWKRPMLRALSTHVPTD-YGLAVTYFIYTSRLLFELIADPAISGMMKSLEPVAQVTPPAVIEEQPVQFVSTRPG 273          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A4D9CZ02_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ02_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.680e-12
Identity = 67/222 (30.18%), Postives = 106/222 (47.75%), Query Frame = 3
Query:  702 IDFDFGEPLP-PPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKG-RGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSV--------------SRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
            ID   G  +P P + + +  AAK A  G    ARL+G   VTV V   P  +  + +A  +   ++  +G K   P    W  T+GEF T  G  +P++RLL  ++ K A      +   V+E   +LQ P+ SPW+ P++RLL+                ++     +E+ ++VY  RL+FEL+A++  + +M  L P G V     L P    F  +P G
Sbjct:  101 IDMVTGRAVPWPGADWVAKDAAKRAVLGLDTEARLIG--SVTVHVHMRPAILRAMLSAQKIKSTQRPVKGLKG--PIQVNWDRTSGEFPTPQGQ-LPLSRLLCAMDEKKALCPEE-SHASVMERLWSLQNPQSSPWRRPMIRLLTSLQSPPAMLLAPDEPEKEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSG 316          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: W7TYI3_9STRA (Dna excision repair protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.210e-11
Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 3
Query:  702 IDFDFGEPLP-PPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKG-RGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSV--------------SRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPG 1319
            ID   G  +P P + + +  AAK A  G    ARL+G   VTV V      +  + +A  V   ++  +G K   P    W  T+GEF T  G  +P++RLL  ++ K A      +   ++E   +LQ P+ SPW+ P++RLL+                 +     +E+ ++VY  RL+FEL+A++  + +M  L P G V     L P    F  +P G
Sbjct:  101 IDMVTGRAVPWPGADWVAKDAAKRAVLGLDTEARLIG--SVTVHVHMRSAILRAMLSAQKVKSTQRPVKGLKG--PIQVNWDRTSGEFPTPQGQ-LPLSRLLCAMDEKKALCAEE-SHASIMERLWSLQNPQSSPWRRPMIRLLTSLQPPPAILLAPDEPEEEEADLNVEVTFHVYFGRLIFELIANSDTQALMAALTPAGDVFSAARLPPSTGRFRRSPSG 316          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: F0XXK2_AURAN (FHA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK2_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 7.730e-10
Identity = 61/186 (32.80%), Postives = 87/186 (46.77%), Query Frame = 3
Query:  783 DVNVARLLGLFMVTVDVM--GDPGKV--DHLRAANPVAPPKKGR------GAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVADAAIKTIMENLQPVGAVTEPVALAPQPTMFLSA 1310
            D    RLLG  +V  DV   GD G+   D  RA NP A   +         A  EP +             +D     V RLL+ +  +   L R  A +  LE+   L AP   P K P LR + V+ + G  GL++   VYA+RLLF L+AD A+K ++ ++ P GAV    A  P   +F+++
Sbjct: 1538 DAEPCRLLGTSLVAFDVAAGGDAGRELRDLCRAVNPTAKATRTHYGVERFNADGEPGK------------DKDEATTTVKRLLDKVR-QGKLLARAAAAVPFLEAAHGLMAPAHLPHKAPCLRCVCVAAR-GAGGLDVEVRVYATRLLFYLIADDAVKAVLNHIAPAGAVLRREAPPPTADLFVTS 1709          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: C1EH46_MICCC (SNF2 super family n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH46_MICCC)

HSP 1 Score: 62.8 bits (151), Expect = 1.260e-6
Identity = 62/220 (28.18%), Postives = 90/220 (40.91%), Query Frame = 3
Query:  690 FAPTIDFDF-----GEPLPPPSRFFSSQAAKEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRA------ANPVAPPKKGRGAKNEPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVG----------------------KNGLEIVYYVYASRLLFELVADAAIKTIMENLQP 1250
            + PTI FD      G P+  P  + +   A  AA    N  RLLG+   T+ +   PG+  H RA      A   A  +  R     P     W+   GE  +  G  VPV +L E +      +  P  GL +L +    Q P  SPWK PL R + +   V                          +++   VYASRL+FE++AD  ++ I+ +L P
Sbjct:   76 YPPTIAFDDPFHPRGVPVRCPPDWHTVDGANAAAERIRNEVRLLGV--ATLTLASAPGEA-HARATLASLAAGVRASKRTVRKNYRGPAGVETWN-DVGEPGSARGTSVPVGKLAECVSAGILDVAEP-HGLPLLHALAGGQHPVTSPWKVPLTRCVCLLEAVSDAPANPPGAVGGSHEGETESSQSTAVKVELAVYASRLMFEMIADDGVRLIVSHLAP 290          
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Match: A0A830HSR7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HSR7_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-5
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 3
Query:  933 VWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLESFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIV----YYVYASRLLFELVADAAIKTIMENL 1244
             WH  TGE  T     V +  L + IE+    +    A  + ++S  AL  P  SPW  PL+R+L     +  + L +       VYASRLLFELVAD A++T++  L
Sbjct:  176 TWHTETGETCTNQKSLVSIPLLHQAIESFKINVAEEAA--KTVDSLDALMRPAASPWHMPLVRVLG---NLPDDPLAVEDTLHLQVYASRLLFELVADDAVRTVLAAL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7708.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2K8_ECTSI5.050e-1444.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHJ8_9PHAE5.140e-1428.94SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A4D9CZ02_9STRA6.680e-1230.18Helicase ATP-binding domain-containing protein n=1... [more]
W7TYI3_9STRA6.210e-1129.73Dna excision repair protein n=2 Tax=Nannochloropsi... [more]
F0XXK2_AURAN7.730e-1032.80FHA domain-containing protein n=1 Tax=Aureococcus ... [more]
C1EH46_MICCC1.260e-628.18SNF2 super family n=1 Tax=Micromonas commoda (stra... [more]
A0A830HSR7_9CHLO1.090e-536.11Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7708contigP-wetherbeei_contig7708:1140..2896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2K8
PFAMsHIRAN,Helicase_C,SNF2_N,UBA_4,zf-C3HC4_3,zf-RING_5
Model size1456
Max annot lvl2759|Eukaryota
KEGG koko:K15710,ko:K15711
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-15
EggNOG OGsCOG0141@1|root,COG0553@1|root,KOG1001@2759|Eukaryota,KOG1002@2759|Eukaryota
EC2.3.2.27
Descriptionpyrimidine dimer repair by nucleotide-excision repair
Cds size990
COG categoryE
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.203948-UTR-P-wetherbeei_contig7708:1139..14791683186996.203948-UTR-P-wetherbeei_contig7708:1139..1479Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7708 1140..1479 +
1683186996.2156868-UTR-P-wetherbeei_contig7708:1782..19061683186996.2156868-UTR-P-wetherbeei_contig7708:1782..1906Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7708 1783..1906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186996.2257416-CDS-P-wetherbeei_contig7708:1906..28961683186996.2257416-CDS-P-wetherbeei_contig7708:1906..2896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7708 1907..2896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7708.2.1prot_P-wetherbeei_contig7708.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7708 1907..2896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7708.2.1

>prot_P-wetherbeei_contig7708.2.1 ID=prot_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MAEPPRRSSTREKRKVEVFSPTKAIPPEEERGGKKPKKDPAPAEPSRRYH
RIGEVSSASKRARVKTMHDPLGSLEFAPTIDFDFGEPLPPPSRFFSSQAA
KEAARGDVNVARLLGLFMVTVDVMGDPGKVDHLRAANPVAPPKKGRGAKN
EPPRPAVWHPTTGEFSTEDGDHVPVTRLLEWIETKAAKLRRPCAGLEVLE
SFMALQAPEVSPWKFPLLRLLSVSRKVGKNGLEIVYYVYASRLLFELVAD
AAIKTIMENLQPVGAVTEPVALAPQPTMFLSAPPGAAADGGGGGAAAAGG
VAAVEVDTPPSPGVAAAAAAGGVAAVEVDT
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mRNA from alignment at P-wetherbeei_contig7708:1140..2896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7708.2.1 ID=mRNA_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1757bp|location=Sequence derived from alignment at P-wetherbeei_contig7708:1140..2896+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCCAGGTGGACGCTGCCAGTTGCACCGTTTCCGCGGAAATGCGCTGTG TACGAGCGCTGTGCCTTCCTTTCCACAGAATCAAGAAAGTATCTTTTCGC GTCGGAAGCATTTACAGCAGACCAATAAGATACCGTCCACATCGCGTAGA CACTCCTTTTCCTTTCTTAGAGTGCGACCCTCGACCGTGCCGATACAGGA TTTAACGCGGCTGTGTCAAGTGACATCAAGAAAATACTGTCATTGGTCGA CGGTGCGGCTTTCCCGTTACAGAAAGCTTAGTAAAACCTGCTTTAACCCT ACCTTGGCGACCAACAAAGCGCCAGCGACGCCGAGCCAAAGTCAGCGAGC GTTCTTATGAGGAGGGCTAGGTGGAGGGAGTTATCTTTTCCTCCTCTATT AAAACAGTTTACGTGCTTTCTCACACGCTCTATGTACAGCACGAATGCTC TTGTAACCCTGTGGGTTCCTTGAAAGATCTTGGTGGGGTTTAGAGCAGAA GTCCTAACCCTAGGCATGGGAGGGAAGAATGGGGCCTTCACCAGCCCTTT CTTGTTCCTTTCTTTCTACCCACCTGAGAAACCCTTCTTGCCACCATATA ATTCCCCCCTTTCTAAATGGTGGCAACCCCCTGTACATCAAAGGGAAATC TGTCGCGATCGACAGGACAGTGTGGCGATTGCTACCCAGAAAGGTTTGAC GTCGCTGTCCTTCCCAAGTCTTTCGTCGACGCTGAGGGAGCAGCCTTTCA GTTCTTCGTGAGGGGCCATGGCGGAACCTCCAAGGCGTTCGAGCACAAGA GAGAAAAGGAAAGTTGAAGTCTTCAGCCCCACGAAGGCGATCCCTCCGGA AGAAGAAAGAGGCGGCAAGAAACCAAAAAAGGATCCCGCGCCGGCAGAGC CGTCGCGACGTTATCATAGAATCGGGGAGGTCAGCTCTGCATCGAAGCGA GCTCGCGTCAAGACGATGCACGACCCGCTCGGCTCCCTGGAATTTGCTCC AACAATCGACTTTGATTTCGGCGAGCCCTTGCCGCCACCGTCGCGCTTCT TCTCGTCGCAAGCAGCCAAAGAAGCGGCCCGCGGCGACGTCAACGTGGCG CGCCTGCTGGGGCTCTTCATGGTGACCGTCGACGTCATGGGCGACCCCGG CAAAGTCGACCACCTGCGGGCCGCCAACCCCGTCGCGCCGCCCAAGAAGG GGCGGGGGGCCAAAAACGAGCCGCCGCGGCCGGCCGTCTGGCACCCGACG ACGGGCGAGTTCTCTACGGAAGATGGAGACCACGTTCCTGTGACACGGCT CCTGGAGTGGATCGAGACCAAGGCGGCCAAGCTGCGGCGACCGTGCGCCG GGCTTGAGGTGCTGGAGAGCTTTATGGCGCTGCAGGCACCGGAGGTGTCG CCGTGGAAATTTCCCCTGCTGCGGCTGCTGAGCGTCAGCCGCAAGGTTGG CAAGAACGGCCTCGAGATCGTCTACTACGTCTACGCCAGCCGGCTGCTGT TCGAGCTAGTCGCGGACGCGGCGATCAAAACCATCATGGAGAACCTGCAG CCGGTCGGAGCCGTCACGGAGCCGGTCGCCCTGGCGCCGCAGCCCACCAT GTTCCTCTCTGCGCCGCCAGGGGCTGCCGCCGATGGCGGCGGCGGCGGGG CGGCGGCGGCTGGCGGTGTGGCGGCGGTGGAGGTAGATACGCCCCCGTCG CCGGGCGTGGCGGCGGCGGCGGCGGCTGGCGGTGTGGCGGCGGTGGAGGT AGATACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7708:1140..2896+

>mRNA_P-wetherbeei_contig7708.2.1 ID=mRNA_P-wetherbeei_contig7708.2.1|Name=mRNA_P-wetherbeei_contig7708.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig7708:1140..2896+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAACCTCCAAGGCGTTCGAGCACAAGAGAGAAAAGGAAAGTTGA
AGTCTTCAGCCCCACGAAGGCGATCCCTCCGGAAGAAGAAAGAGGCGGCA
AGAAACCAAAAAAGGATCCCGCGCCGGCAGAGCCGTCGCGACGTTATCAT
AGAATCGGGGAGGTCAGCTCTGCATCGAAGCGAGCTCGCGTCAAGACGAT
GCACGACCCGCTCGGCTCCCTGGAATTTGCTCCAACAATCGACTTTGATT
TCGGCGAGCCCTTGCCGCCACCGTCGCGCTTCTTCTCGTCGCAAGCAGCC
AAAGAAGCGGCCCGCGGCGACGTCAACGTGGCGCGCCTGCTGGGGCTCTT
CATGGTGACCGTCGACGTCATGGGCGACCCCGGCAAAGTCGACCACCTGC
GGGCCGCCAACCCCGTCGCGCCGCCCAAGAAGGGGCGGGGGGCCAAAAAC
GAGCCGCCGCGGCCGGCCGTCTGGCACCCGACGACGGGCGAGTTCTCTAC
GGAAGATGGAGACCACGTTCCTGTGACACGGCTCCTGGAGTGGATCGAGA
CCAAGGCGGCCAAGCTGCGGCGACCGTGCGCCGGGCTTGAGGTGCTGGAG
AGCTTTATGGCGCTGCAGGCACCGGAGGTGTCGCCGTGGAAATTTCCCCT
GCTGCGGCTGCTGAGCGTCAGCCGCAAGGTTGGCAAGAACGGCCTCGAGA
TCGTCTACTACGTCTACGCCAGCCGGCTGCTGTTCGAGCTAGTCGCGGAC
GCGGCGATCAAAACCATCATGGAGAACCTGCAGCCGGTCGGAGCCGTCAC
GGAGCCGGTCGCCCTGGCGCCGCAGCCCACCATGTTCCTCTCTGCGCCGC
CAGGGGCTGCCGCCGATGGCGGCGGCGGCGGGGCGGCGGCGGCTGGCGGT
GTGGCGGCGGTGGAGGTAGATACGCCCCCGTCGCCGGGCGTGGCGGCGGC
GGCGGCGGCTGGCGGTGTGGCGGCGGTGGAGGTAGATACG
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