mRNA_P-wetherbeei_contig7706.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7706.1.2
Unique NamemRNA_P-wetherbeei_contig7706.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A835Z369_9STRA (Ubiquitin elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA)

HSP 1 Score: 377 bits (969), Expect = 3.060e-119
Identity = 197/338 (58.28%), Postives = 254/338 (75.15%), Query Frame = 1
Query:  142 RHLAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPH-LDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTL--EVAVQAVRNATPDIDMDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWI 1146
            +HLAPSLLLLYGDVEHTGFYDKL HRYNI  VLKYLW+S  HR TF+RIS+DT++FV FANGLMNETN LV N ME+L +IR +Q+QQRD A WGAL EE+RNE  ERL+  ERDV + +GLCNET++MV+YLTSD +I+KPF++PELL RLASM+ S+L QLVGKKGLEIK     V++P++Y+F PK+ML  +  +  +FA    DF  AVA   +Y+    ++ KA    RKLGLLD  +LA +D L   VA  A      D ++ ++P+EFLDP++ T M DPV LP SG ++DR TI+QHLLND TDPF+R PL+ +ML+P  ++KA+IDA++
Sbjct:  531 KHLAPSLLLLYGDVEHTGFYDKLTHRYNIALVLKYLWRSPDHRSTFQRISQDTQQFVRFANGLMNETNSLVTNVMEKLLEIRTIQVQQRDGATWGALPEERRNEIEERLTAAERDVKANLGLCNETLNMVSYLTSDAQIRKPFLLPELLGRLASMLLSVLGQLVGKKGLEIK-----VDNPESYNFRPKDMLASVMAVVAHFADAGADFDRAVATCGFYQAQ--LLPKAAATVRKLGLLDMVSLAAVDKLCGSVAAAAADANAMDEELGDVPEEFLDPLMCTIMQDPVGLPTSGQIVDRATIMQHLLNDETDPFNRKPLSVDMLQPQVELKARIDAYL 861          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 3.730e-116
Identity = 193/337 (57.27%), Postives = 250/337 (74.18%), Query Frame = 1
Query:  142 RHLAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNA--TPDIDMDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWI 1146
            +HLAPSLLLLYGDVEHTGFY+KL HR+ I  VLKYLW+S +HR TFRRIS+DT +FV FANGLMNE+N LVA+ ME+LP++RAVQLQ RD A WGA+ E QRNE  ER   NER + S + LCNET+HMV YLTSD +IQKPF+  ELL RLA M+  +L QL+G KGLEIK     V++P++Y+F PKEMLREIC     F+    FH+ +A S YY++  D++ KA    R+L LL A+++A +D+L  AV   R +    +  + E+PDEFLDPVL   M DPV LP SGT++DR TI+QHLLNDS DPF+R PLT++M+EP T+++ +I+ ++
Sbjct:  623 KHLAPSLLLLYGDVEHTGFYEKLTHRFYIAAVLKYLWRSKEHRSTFRRISQDTGKFVRFANGLMNESNSLVASVMEKLPEVRAVQLQMRDPAQWGAMTETQRNEIAERHDENERSLKSNLSLCNETLHMVAYLTSDPDIQKPFLREELLLRLAEMLLCVLKQLIGSKGLEIK-----VDNPESYNFRPKEMLREICTTISQFSTQPGFHKHLAMSGYYQE--DLLPKATSTMRRLQLLPASSMADMDSLCSAVIEARASYEASEASLGEVPDEFLDPVLCHVMRDPVLLPTSGTILDRSTIVQHLLNDSMDPFNRQPLTEDMVEPQTELRERIEEFL 952          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: W7TVR0_9STRA (Ubiquitin conjugation factor e4 b isoform 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVR0_9STRA)

HSP 1 Score: 355 bits (910), Expect = 1.230e-114
Identity = 189/343 (55.10%), Postives = 245/343 (71.43%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDIDMD-EMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQQTAKKRR 1173
            LAP+LLLLYGDVEHTGFYDKL+HR++I  VLK+LW+S +HR+TFRRIS DT +F +FANGLMNETN LVA+ ME+LP+IR+VQLQ +D+ AW A+ EE RNE +ER + NER V+S + LCNETIHM+ YLTSD  ++KPF+ P L PRLA+ + SI+ +LVG KGLEIK     VE+PDA +F PKEMLRE+    ++FA    FH A+++S YY +   M+ K     +++G +  A L     LE AV +        D+  E+PDEFLDP+L T M DPVRLP SG  M+R  I QHLLN  TDPF+R PL+   LEP  ++KAKI+ W+E+Q   KR+
Sbjct:  163 LAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIK-----VENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEG--MLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRK 498          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A4D9D5M9_9STRA (U-box domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5M9_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.500e-107
Identity = 188/343 (54.81%), Postives = 243/343 (70.85%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDIDMD-EMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQQTAKKRR 1173
            LAP+LLLLYGDVEHTGFYDKL+HR++I  VLK+LW+S +HR+TFRRIS DT +F +FANGLMNETN LVA+ ME+LP+IR+VQLQ +D+ AW A+ EE RNE +ER + NER V+S + LCNETIHM+ YLTSD  ++KPF+ P L PRLA+ + SI+ +LVG KGLEIK     VE+PDA +F  KEMLRE+    ++FA    FH A+++S YY +   M+ K     +++G +  A L     LE AV A        D+  E+PDEFLDP+L T M DPVRLP SG  M+R  I QHLLN  TDPF+R PL+   LEP  ++KAKI+ W+E+Q   K +
Sbjct:  710 LAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIK-----VENPDALNFKAKEMLREVALTILHFAGEPAFHTALSESGYYHEG--MLGKVQQTMKRVGGMSEAQLEACTALETAVAAAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKSK 1045          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A7S1GIE2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIE2_CYCTE)

HSP 1 Score: 323 bits (828), Expect = 2.120e-101
Identity = 171/342 (50.00%), Postives = 236/342 (69.01%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATL----AKLDTLEVAVQAVRNATPDIDMDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQQTA 1161
            LAPSLLLLYG+VEHTG+Y+K+ HR NI ++LKYLW+S +HRQ FRRI+++ + F+ FANG+MNETN L+A+ ME+LPQIR  Q+Q  ++  WGAL +EQR     RL  NE +V   + LCN+T+ M+ YL +D +I+  F++ E+  RL +M+  +L++LVG KGLE+K     VE+P+ Y+F PKEMLR++C IF  FA   DF    AKS YY    D++ K+V  CRK  LL   ++    A  D +E AV+ V  A+ D  + + PDEFLDP++ T M DPV LP S T++DR TI QHLLND  DPF+R  LT EM+ PAT++K K+  W+E++ A
Sbjct:  247 LAPSLLLLYGEVEHTGYYEKMGHRANIASLLKYLWESGEHRQAFRRITKNKDSFIKFANGIMNETNSLIASIMEKLPQIRQAQVQMANSQQWGALNDEQRETITSRLEENEHEVKRALPLCNKTLQMLGYLNTDQDIRNLFLLQEMCARLVNMLLHVLTKLVGSKGLELK-----VENPEEYNFRPKEMLRDLCAIFALFANSSDFQTECAKSGYYNL--DLVSKSVKTCRKFNLLTGESMDAFSALPDLIEAAVKNV--ASDDALLTDAPDEFLDPLMFTFMKDPVLLPTSETIIDRATITQHLLNDPHDPFNRKELTIEMIVPATELKEKMAKWLEEKRA 579          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A7S4QYQ6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYQ6_9STRA)

HSP 1 Score: 323 bits (827), Expect = 3.040e-98
Identity = 166/337 (49.26%), Postives = 234/337 (69.44%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDID--MDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQ 1152
            LAPSLLLLYG+VEHTG+Y+K+ HR +I  +LKYLW+S +HR  FRRI+++ E F+ FANG+MNETN L+A+ ME+LP+IR VQ+Q  +   W AL EEQR     R   NERDV   + LCN+T+ M+ YL +D +I+  F++ E+  RL +M+  +L++LVG KGLE+K     V++P+ Y+F PKEMLR++C IF +F+   +F    AKS YY  + D++ K+V  CRKL LL   ++   ++L   V+       D D  + + PDEFLDP++ T M DPV LP SGTV+DR TI+QHLLND  DPF+R PLT +M+ PAT++K K++ W+E+
Sbjct:  540 LAPSLLLLYGEVEHTGYYEKMSHRAHIAALLKYLWESTEHRNAFRRITQNKESFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQQWAALPEEQRETITSRHEENERDVERALPLCNKTLQMLGYLNTDDDIRNLFLLEEMCSRLVNMLLHVLTKLVGSKGLELK-----VDNPENYNFRPKEMLRDLCAIFASFSSAHEFQVECAKSGYY--NTDLMTKSVKTCRKLNLLTGESMELFESLAEKVKTASKHVGDDDALVADAPDEFLDPLMCTFMKDPVLLPTSGTVIDRSTIMQHLLNDPVDPFNRKPLTVDMIIPATELKEKMENWLEE 869          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A7R9WV05_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WV05_9STRA)

HSP 1 Score: 295 bits (756), Expect = 8.640e-94
Identity = 155/337 (45.99%), Postives = 223/337 (66.17%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDID--MDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQ 1152
            LAPSLLLLYG+VEHTG+YDK+ HR  I ++LKYLW+S +HR  FR I+++   F+ FANG+MNETN L+A  M++LP+IR  Q +  +   WG L E+++N    RL  NER+V   + LCN+T+ M  YL +D +I+  F++ EL PRL +M+  +L++LVG KGL++K     V +P+ YHF PKEMLR++C IF  FA   +F    AKS      P ++  AV  CR+L LL   ++   ++L   V+       + +  + + PDEFLD +L+T M DPV LP SG ++DR TI QHLLND  DPF+RA +T + ++PAT++KAK+  W+E+
Sbjct:    4 LAPSLLLLYGEVEHTGYYDKMSHRAKISSLLKYLWESSEHRPAFRSITQNKTSFIKFANGIMNETNTLIATVMQKLPEIREAQEKMANPQEWGQLSEDEQNVISSRLEDNEREVKHALPLCNKTLQMFGYLNTDEDIRSLFLLEELCPRLVTMLLHVLTKLVGSKGLDLK-----VNNPEQYHFRPKEMLRDLCAIFALFASTKEFSMECAKSGC---DPTLLRTAVKTCRRLNLLTGESMTAFESLPTFVEDASRIVAEDEKLLSDAPDEFLDELLSTYMNDPVILP-SGHIVDRSTITQHLLNDPIDPFNRAEMTIDDVKPATELKAKMVTWLEE 331          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: B8C686_THAPS (U-box domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C686_THAPS)

HSP 1 Score: 300 bits (768), Expect = 1.020e-93
Identity = 160/335 (47.76%), Postives = 223/335 (66.57%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQ-AVRNATPDIDM-DEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWI 1146
            LAPSLLLLYG+VEHTGFY+K  HR  I  +LKYLW S +H+  F+RI+ D E F  FANG++NE N   A+ MERLP IR VQLQ  +   W AL EE R     R   NER +   + LCN  + M+ +L +D +I+  F++P++ PRLA+M+  +L++LVG +GL++K     V +P+ Y+F PKEML+++C +F +FA   +F    AKS YY  +PD++ K+V  CRKLGLL   ++     L   V+ A +  T D D+ ++ PDEF+DP+L+  M DPV LP SG ++DR+TI QHLLNDS DPF+R  L  E + PA ++KAK+DAW+
Sbjct:  141 LAPSLLLLYGEVEHTGFYEKNGHRTKIAKMLKYLWGSPEHKAAFKRITEDKESFRKFANGIVNEMNSQFASVMERLPAIRTVQLQMANPQEWAALSEEDRETITSRHEENERSIKQVLPLCNSVMKMLGFLNTDKDIRDMFLLPDMCPRLANMLLHVLTKLVGSRGLDLK-----VNNPETYNFRPKEMLQDLCVVFSSFAAADEFQVECAKSGYY--TPDLMNKSVKTCRKLGLLVGESMELFAELASKVEEASKIMTSDEDLYEDAPDEFMDPLLSEFMNDPVLLPTSGNIVDRKTITQHLLNDSMDPFNRKELKLEDVVPAVELKAKMDAWL 468          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A2P4Y655_9STRA (Ubiquitin conjugation factor E4 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y655_9STRA)

HSP 1 Score: 293 bits (749), Expect = 3.150e-92
Identity = 165/344 (47.97%), Postives = 223/344 (64.83%), Query Frame = 1
Query:  142 RHLAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFM-MPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDID--MDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQQTAK 1164
            RHLAP LL LYGDVEHTGFY+KL+HRYNI  +LKYLWK D H+  F  IS D E FV FA+GLMN  N LV + +  LP+I+ +Q + +D A W AL E +R +    LS  ER VTS + L NETIHM++YLTS  EIQ+PF+ MPEL  RL SM+ S++ +L G +G+E+K     V +P+ Y F PK ML+EI E  ++FA +  F EAVA + +Y+    +  K      +  LL+ + +AK +   + V+       +++  + ++P+EFLDP++ T M DPV LP SG  MDR  I QHL+ND +DPF+R PLT   L+P TD+K KID WI+ Q  K
Sbjct:   38 RHLAPCLLALYGDVEHTGFYEKLEHRYNIACLLKYLWKLDGHKPAFLLISEDRENFVKFAHGLMNHINSLVTDALIALPEIKVLQEEMQDVARWMALDETEREQKQSLLSDKERTVTSSLQLANETIHMMSYLTS--EIQEPFVKMPELEDRLVSMLNSVIVKLAGPRGVELK-----VNNPEQYKFRPKIMLKEIVETLLHFAHYSSFLEAVATNGFYDGQ--VFRKCAHIVARTQLLEPSDVAKFELFVIDVEKAAEGAANLEETLGDIPEEFLDPLVFTLMKDPVLLP-SGYTMDRSCITQHLMNDQSDPFTRVPLTMNQLQPNTDLKTKIDQWIQVQQQK 371          
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Match: A0A7S2A739_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A739_TRICV)

HSP 1 Score: 301 bits (770), Expect = 3.550e-92
Identity = 156/337 (46.29%), Postives = 226/337 (67.06%), Query Frame = 1
Query:  148 LAPSLLLLYGDVEHTGFYDKLDHRYNICNVLKYLWKSDQHRQTFRRISRDTERFVTFANGLMNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNERDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQLVGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVAKSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDIDM--DEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSRAPLTKEMLEPATDVKAKIDAWIEQ 1152
            LAPSLLLLYG+VE TG+YD++ +R +I  +LKYLW+S +HR  FR+I+ D + F+ FANG+MNETN L+A+ ME+LP+IR VQ+Q  +   W AL EE+R     R   NE  V + + LCN T+ M+ +L +D +I+  F++ E+ PRL +M+  +L++LVG KGLE+K     V++P++YHF PK+MLR++C +F NFA   +F    AKS YY  + D++ K+V  CRKLGLL      +  +L   V+    +  D D    + PDEFLDP++ T M DPV LP S +V+DR TI QHLLND  DPF+R  LT +M+  AT+++ ++  W+E+
Sbjct:  308 LAPSLLLLYGEVEQTGYYDRMRYRAHIAALLKYLWESGEHRGAFRKIAADKDSFIKFANGIMNETNSLIASVMEKLPEIRRVQVQMANPQEWAALGEERRETISGRHEENEESVRTELPLCNRTLQMLGFLNTDPDIRNLFLLEEMCPRLVNMLFHVLTKLVGSKGLELK-----VDNPESYHFRPKDMLRDLCAVFANFASADEFVLECAKSGYY--NADLVQKSVRTCRKLGLLTGTAAEEFASLTSRVEHAARSVEDFDALTADAPDEFLDPLVCTFMRDPVYLPTSDSVVDRTTIAQHLLNDPHDPFNRKDLTMDMVRDATELRERMGKWLEE 637          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7706.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z369_9STRA3.060e-11958.28Ubiquitin elongating factor core-domain-containing... [more]
D8LU34_ECTSI3.730e-11657.27U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
W7TVR0_9STRA1.230e-11455.10Ubiquitin conjugation factor e4 b isoform 2 n=1 Ta... [more]
A0A4D9D5M9_9STRA2.500e-10754.81U-box domain-containing protein n=3 Tax=Monodopsid... [more]
A0A7S1GIE2_CYCTE2.120e-10150.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4QYQ6_9STRA3.040e-9849.26Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9WV05_9STRA8.640e-9445.99Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8C686_THAPS1.020e-9347.76U-box domain-containing protein n=1 Tax=Thalassios... [more]
A0A2P4Y655_9STRA3.150e-9247.97Ubiquitin conjugation factor E4 n=1 Tax=Phytophtho... [more]
A0A7S2A739_TRICV3.550e-9246.29Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7706contigP-wetherbeei_contig7706:2..3006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU34
Preferred nameUBE4B
PFAMsU-box,Ufd2P_core
Model size1347
Max annot lvl2759|Eukaryota
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000166,GO:0000209,GO:0003007,GO:0003205,GO:0003206,GO:0003208,GO:0003222,GO:0003229,GO:0003231,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007507,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008626,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0012501,GO:0014706,GO:0016043,GO:0016567,GO:0016740,GO:0017076,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030433,GO:0030554,GO:0031175,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0046677,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0051865,GO:0055008,GO:0055010,GO:0060255,GO:0060415,GO:0060537,GO:0061061,GO:0061383,GO:0061384,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0097159,GO:0097190,GO:0097237,GO:0097305,GO:0097306,GO:0097367,GO:0120036,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903320,GO:1903322,GO:1990234
Exons8
Evalue1.83e-80
EggNOG OGsCOG5113@1|root,KOG2042@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin conjugation factor E4, core
Ec32 orthologEc-16_000050.1
EC2.3.2.27
Descriptionubiquitin-ubiquitin ligase activity
Cds size885
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7706.1.2prot_P-wetherbeei_contig7706.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7706 134..2490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.9725704-UTR-P-wetherbeei_contig7706:1..1331683186995.9725704-UTR-P-wetherbeei_contig7706:1..133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7706 2..133 -
1683186996.0696023-UTR-P-wetherbeei_contig7706:2490..25261683186996.0696023-UTR-P-wetherbeei_contig7706:2490..2526Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7706 2491..2526 -
1683186996.0781672-UTR-P-wetherbeei_contig7706:2712..30061683186996.0781672-UTR-P-wetherbeei_contig7706:2712..3006Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7706 2713..3006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.987138-CDS-P-wetherbeei_contig7706:133..2691683186995.987138-CDS-P-wetherbeei_contig7706:133..269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 134..269 -
1683186995.9972274-CDS-P-wetherbeei_contig7706:474..6111683186995.9972274-CDS-P-wetherbeei_contig7706:474..611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 475..611 -
1683186996.0075567-CDS-P-wetherbeei_contig7706:864..10351683186996.0075567-CDS-P-wetherbeei_contig7706:864..1035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 865..1035 -
1683186996.0176735-CDS-P-wetherbeei_contig7706:1333..14321683186996.0176735-CDS-P-wetherbeei_contig7706:1333..1432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 1334..1432 -
1683186996.0352275-CDS-P-wetherbeei_contig7706:1641..17851683186996.0352275-CDS-P-wetherbeei_contig7706:1641..1785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 1642..1785 -
1683186996.0493011-CDS-P-wetherbeei_contig7706:2077..22541683186996.0493011-CDS-P-wetherbeei_contig7706:2077..2254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 2078..2254 -
1683186996.0612109-CDS-P-wetherbeei_contig7706:2469..24901683186996.0612109-CDS-P-wetherbeei_contig7706:2469..2490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7706 2470..2490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7706.1.2

>prot_P-wetherbeei_contig7706.1.2 ID=prot_P-wetherbeei_contig7706.1.2|Name=mRNA_P-wetherbeei_contig7706.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
MNETNVLVANTMERLPQIRAVQLQQRDAAAWGALREEQRNETLERLSGNE
RDVTSYMGLCNETIHMVNYLTSDLEIQKPFMMPELLPRLASMMTSILSQL
VGKKGLEIKACRLTVEDPDAYHFHPKEMLREICEIFVNFAPHLDFHEAVA
KSAYYEQSPDMIVKAVGACRKLGLLDAATLAKLDTLEVAVQAVRNATPDI
DMDEMPDEFLDPVLATPMTDPVRLPHSGTVMDRQTILQHLLNDSTDPFSR
APLTKEMLEPATDVKAKIDAWIEQQTAKKRRTEPVSQSMEEESA*
back to top

mRNA from alignment at P-wetherbeei_contig7706:2..3006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7706.1.2 ID=mRNA_P-wetherbeei_contig7706.1.2|Name=mRNA_P-wetherbeei_contig7706.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3005bp|location=Sequence derived from alignment at P-wetherbeei_contig7706:2..3006- (Phaeothamnion wetherbeei SAG_119_79)
GTGTAACGACACGTCGGAGTTTGGTTTTGCCTGTGGAAAGAAGGGAGCAT TGTGCTTGTCCGCGCCGCTCCGATCCGGTGCATTTTCCGGATTGAGGCTG AGAATGGTTAGTTCTGCTGCGTGTTGCGGGACCACTGCGTCAGGCACCTG GCGCCGTCACTGCTACTGCTGTACGGCGACGTGGAGCACACAGGCTTTTA CGACAAGCTCGACCACCGCTACAACATCTGCAACGTCCTCAAGTACCTCT GGAAGAGCGACCAGCACAGGCAGACCTTCCGCCGCATCAGCCGGGTGAGT ACAGCGCGACCGGTTTGTCCGTCTGTCGATCGGGCGGCTCGTCGCGTCCA TTTGCTCGAGAGAAATGCCGAGGTCTCAACTTTGGCGCTTGACTGACGGT AGACGATTTCCCTTTCTGCGCTATTGCCTGGCACAAACGATTCGGCCACT TCCATCATCCCTCACATATCAAATCCACAGGATACGGAGCGGTTCGTAAC CTTCGCCAACGGCCTCATGAACGAGACAAATGTCCTGGTGAGTCACTTTT ATAGGAGGAGCCAGGGGGAATGACACCGCTGCTCAATTTATATGCCAGAA CAGGTTTTTCATGGGGCTCGAGCAGTATTGTAAACTAGCGGCCACTTTCC TCCGACCGGGTGTTAATCTCTTTTCTGCCAGCGGCTGCCATGCCCGCCGT CGCCGCCGTGGTCGCCGCCGCGCCGCTCGTGCTGCCACCACCTCACTCGC AGGTGGCCAACACGATGGAGCGGCTGCCGCAGATCCGAGCGGTGCAGCTG CAGCAGCGCGACGCGGCGGCATGGGGGGCGCTCAGGGAGGAGCAGCGAAA CGAGACGCTGGAACGCCTCTCCGGCAACGAGCGGGACGTCACCAGCTACA TGGGGCTGTGCAACGAGACCATCCATATGGTAAGTCGGTCGGCACCGAAG GGTTGGAGGGTTCCTTTTGGAAGAAGTTTTATTGGAAGTGCTTTGGTGCC AGAAGCGGAGCGGACGGGCAGTGGGCTACGCTAAGCCTTCTGCTGGTGCG AATGGAAGTACGGCGAGGCGGCTGCTGTGCGCTCCCATCCATCCAGTTGT CGGTCCGATTGGTTTGGTTTTTGCCAGGCTGGTCGTGCGAGGCCTCAACG AGTATCTACGGTGGAATGGCAGCCGCTCCGTTCTTCTCTTCCGGTCCAAT CAATCCAATCCATATCCCCAGGTGAACTACCTGACGAGCGACCTGGAGAT CCAGAAGCCCTTCATGATGCCTGAGCTGCTGCCGCGGCTGGCCAGCATGA TGACCTCCATCCTCTCGCAGCTCGTCGGCAAGAAGGGCCTCGAGATCAAG GCATGCCGACTGACTGTATACATAGCTTATTTGCATCATCCTTTCTCTCC TTGCCGGCCGCCGCCGTCGTATCAAGCGACCTGCTTGTTGGTTCTGCTGC AATTGTCAGCTGCCTTTACGTTTGACCGTCCGAACATTGCGCGCAGTTCT TTTTGCCCATGGCTGGCGTGTGCACTTTTGGTCTGTCGCGGCTGAACGTT GAATATCGTGTTGAATGTCGGCAGGTGGAGGACCCGGACGCCTACCACTT CCATCCGAAGGAGATGCTGCGCGAGATCTGCGAGATCTTCGTCAACTTCG CGCCGCACCTCGACTTCCATGAGGTGCGCAGCCAGCCATTGCTATCACCG GATTTTCTCTTACTGAGCCTCTGTTCTTTTTTGTTGCCCTTATAACTTTT TGGGCCATTCTGACAACTCTGATTTACATTCTCTCTGCTCAACGCGGTCT TTGATTTCATCTCCGCCTCCCTTGGTGGTAGGCGATCTGGAGTCGAGAAG GGGGACCAATCGTTTCTTAATGCCTCGCCTCCGCCCCCTTCTGATTGGTC CCTGCCGGTTTCGTTTCTTCTTCTCCTTGCCGTCGGCTTTCTGCTCGTTT CTGCCGCTTCCGGCCGGGCAGGCGGTGGCCAAGTCTGCGTACTACGAGCA GAGCCCGGACATGATTGTCAAGGCGGTGGGGGCGTGCCGCAAGCTGGGGC TGCTGGACGCCGCCACGCTCGCCAAGCTCGACACCCTCGAGGTCGCTGTG CAGGCCGTCCGCAATGCCACGCCGGACATCGACATGGATGAGGTGCGGGG CAGTCCACGGTGCAGTGCGTGTCGACTCAGATTCTGGGCTGCTGTTTTGA TTGCCATAAACGCTTCCGGGTGTGGCTTGCCAGTGCGAAGGGACAGTTCA GCTGTGGGGAATGATGTTTACTTGCGGGAATGCTGGCTTATCAGGGGATG GTACATTCCTTTGTGTTCTTCCGTGCTTTTCTCTTTTGGGTTCGTCCTCG ACCCAACTTTCGCTCTCCCGTTTCAACGGCCTACCCCTCTCGCAGATGCC CGATGAGTTCCTGGACCCGGTGCTAGCGACGCCGATGACGGACCCGGTGC GGCTGCCGCACAGCGGGACGGTGATGGATCGCCAAACCATCCTGCAGCAC CTCCTTAACGACTCCACCGATCCCTTCAGCAGGTGCGACCGAGCAAGCGA CGGAGATATGATGATATATTTTTGTTTCCGGTGCCTTCGAAGGTTTTGTG GCATTTCTTTTGCGCAGCAGGGCTATTCTGCATTGTCAAGCTGCAAATTG GTTTTCATGTTATTGCTCAATAATAGGGAAACTTTCCGCAACACCATGTT CCACATCACCACCTCATCCGGCGGCTGCACGCTTTAGGGCCCCGCTGACG AAGGAGATGCTGGAGCCGGCCACGGATGTCAAGGCCAAGATCGACGCGTG GATCGAGCAGCAGACAGCCAAGAAGCGGCGGACAGAGCCAGTGTCGCAGT CCATGGAGGAGGAAAGCGCCTGAAGCTTGAGCTGGGCGGCGGTGTTGCCA GAGCAGGGGATAATGGTTTTGGCGGGGACGGGAGGCAAGTCTCATGTGTA TTATGTAAGACTTTGTGACGCACATTACATACAATTAATTACCGCCCTGT TTCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7706:2..3006-

>mRNA_P-wetherbeei_contig7706.1.2 ID=mRNA_P-wetherbeei_contig7706.1.2|Name=mRNA_P-wetherbeei_contig7706.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig7706:2..3006- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAGACAAATGTCCTGGTGGCCAACACGATGGAGCGGCTGCCGCA
GATCCGAGCGGTGCAGCTGCAGCAGCGCGACGCGGCGGCATGGGGGGCGC
TCAGGGAGGAGCAGCGAAACGAGACGCTGGAACGCCTCTCCGGCAACGAG
CGGGACGTCACCAGCTACATGGGGCTGTGCAACGAGACCATCCATATGGT
GAACTACCTGACGAGCGACCTGGAGATCCAGAAGCCCTTCATGATGCCTG
AGCTGCTGCCGCGGCTGGCCAGCATGATGACCTCCATCCTCTCGCAGCTC
GTCGGCAAGAAGGGCCTCGAGATCAAGGCATGCCGACTGACTGTGGAGGA
CCCGGACGCCTACCACTTCCATCCGAAGGAGATGCTGCGCGAGATCTGCG
AGATCTTCGTCAACTTCGCGCCGCACCTCGACTTCCATGAGGCGGTGGCC
AAGTCTGCGTACTACGAGCAGAGCCCGGACATGATTGTCAAGGCGGTGGG
GGCGTGCCGCAAGCTGGGGCTGCTGGACGCCGCCACGCTCGCCAAGCTCG
ACACCCTCGAGGTCGCTGTGCAGGCCGTCCGCAATGCCACGCCGGACATC
GACATGGATGAGATGCCCGATGAGTTCCTGGACCCGGTGCTAGCGACGCC
GATGACGGACCCGGTGCGGCTGCCGCACAGCGGGACGGTGATGGATCGCC
AAACCATCCTGCAGCACCTCCTTAACGACTCCACCGATCCCTTCAGCAGG
GCCCCGCTGACGAAGGAGATGCTGGAGCCGGCCACGGATGTCAAGGCCAA
GATCGACGCGTGGATCGAGCAGCAGACAGCCAAGAAGCGGCGGACAGAGC
CAGTGTCGCAGTCCATGGAGGAGGAAAGCGCCTGA
back to top