mRNA_P-wetherbeei_contig7700.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7700.2.1
Unique NamemRNA_P-wetherbeei_contig7700.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7700.2.1 vs. uniprot
Match: A0A5D6XUE8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUE8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.820e-14
Identity = 53/116 (45.69%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  790 QHPLHQAALEGHAGFVAFLFREGLAVPDTADADGATALYYASSGGHTECMEVLLAVGADPSRASVRRAPLHACAGWRATAGSMVAARYAACVRQLLEAGADVWARDKDGRTALEVA 1137
            +HP H AA+EG A FV  L    L   +  DADG +A+YYA++ GH + +  LLA GADP+ ASVRRAPLH    WR           A CV  LL  GA     D  G TAL++A
Sbjct:  264 RHPFHYAAVEGRAAFVRALLARRLVDVNLVDADGCSAVYYAAANGHADVLRELLARGADPNVASVRRAPLHCATEWRR----------AECVALLLAHGARADEVDTSGSTALDIA 369
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BLAST of mRNA_P-wetherbeei_contig7700.2.1 vs. uniprot
Match: A0A662WJA9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJA9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.230e-14
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  790 QHPLHQAALEGHAGFVAFLFREGLAVPDTADADGATALYYASSGGHTECMEVLLAVGADPSRASVRRAPLHACAGWRATAGSMVAARYAACVRQLLEAGADVWARDKDGRTALEVA 1137
            +HP H AA+EG   FV  L  + L   +  D D  TALYYA++ GH + M+ LL  GADP+ AS+RR+PLH    W              CV+ LL+ GA + A++KDG T  + A
Sbjct:  275 RHPFHYAAVEGKTDFVRTLLEKQLVDVNMVDVDRCTALYYAAANGHADVMQTLLTFGADPNLASIRRSPLHCAVEWHRVE----------CVQLLLQHGASLDAKNKDGLTPSQAA 380
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BLAST of mRNA_P-wetherbeei_contig7700.2.1 vs. uniprot
Match: A0A1V9YJY0_9STRA (Ankyrin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJY0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.490e-11
Identity = 51/118 (43.22%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  790 QHPLHQAALEGHAGFVAFLFREGLAVPDT--ADADGATALYYASSGGHTECMEVLLAVGADPSRASVRRAPLHACAGWRATAGSMVAARYAACVRQLLEAGADVWARDKDGRTALEVA 1137
            +HP H AA+EGH  FVA L    L V D    DADG +A+YYAS+ GH   +  LLA GAD +  S+RR+PLH    W+             CV  LL  GA   A D +G T L++A
Sbjct:  261 RHPFHYAAVEGHDSFVAALLEARL-VEDVNMQDADGCSAVYYASANGHVAVLRRLLAAGADLNVVSIRRSPLHCAVAWQRLH----------CVNLLLAHGAHRDALDLEGLTPLDIA 367
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7700.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5D6XUE8_9STRA1.820e-1445.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662WJA9_9STRA9.230e-1441.38Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1V9YJY0_9STRA5.490e-1143.22Ankyrin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7700contigP-wetherbeei_contig7700:1473..2828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008873688.1
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size1137
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.33e-15
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size1137
COG categoryI
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.7250123-CDS-P-wetherbeei_contig7700:1472..16671683186995.7250123-CDS-P-wetherbeei_contig7700:1472..1667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7700 1473..1667 +
1683186995.734784-CDS-P-wetherbeei_contig7700:1886..28281683186995.734784-CDS-P-wetherbeei_contig7700:1886..2828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7700 1887..2828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7700.2.1prot_P-wetherbeei_contig7700.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7700 1473..2828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7700.2.1

>prot_P-wetherbeei_contig7700.2.1 ID=prot_P-wetherbeei_contig7700.2.1|Name=mRNA_P-wetherbeei_contig7700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=379bp
MRAAKAGDRAACEHALTTTGKDPRAFVTECFESNGGNALHYAASAGSAAV
LEYLLDLGCDVDTHKRDAKTPLHEACNHGQGTAVELLLARGANVNAKKTN
DWSPLHYAAQHGTVGPILALLKAGADVDGRNREGASPLLLAAREGHKEAV
AALLEAGAAPDATTRTLRTPLLTAVAHGRAGVVSQLLAAGASPAHADSCG
QTVWHACAAAGDEAMARHLLAAGVRPAASEDAGGGGSGTNGSRDGASGGS
GDATAAGSSSLRGQHPLHQAALEGHAGFVAFLFREGLAVPDTADADGATA
LYYASSGGHTECMEVLLAVGADPSRASVRRAPLHACAGWRATAGSMVAAR
YAACVRQLLEAGADVWARDKDGRTALEVA
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mRNA from alignment at P-wetherbeei_contig7700:1473..2828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7700.2.1 ID=mRNA_P-wetherbeei_contig7700.2.1|Name=mRNA_P-wetherbeei_contig7700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1356bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:1473..2828+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCCGCCAAAGCCGGGGACCGAGCAGCCTGCGAGCACGCCCTAAC
TACGACTGGAAAGGATCCACGAGCATTCGTGACAGAGTGTTTTGAGAGTA
ATGGCGGGAATGCTCTCCACTACGCTGCGTCCGCGGGTAGCGCAGCTGTG
CTAGAGTATCTTCTGGACCTTGGCTGCGACGTCGATACTCACAAGGTGTG
AAACGTCCTGTGTTTGCACACGAGCTCTCACCTTTTTCGCAAAGTTTCAC
TGATAATTAACAACGCTTTTCCGAAGCAAAAGTCGTTTTCTGTGGCTTTC
AGCGTTTGAAGTGTTTCATGCCTCCCCCTGCCTTCCCGATTTTCCACATT
TTATGTCCCCTACAAGCCAAGTTTCGAACGCGGCTCCCGTTTTCCCGTAA
CGCCTCGTTCTTAGCGCGACGCGAAAACGCCGCTGCACGAGGCCTGCAAT
CACGGCCAGGGAACAGCTGTCGAGCTTCTGTTGGCACGTGGGGCAAATGT
AAACGCGAAGAAGACCAACGACTGGAGCCCATTGCACTACGCGGCTCAAC
ACGGCACTGTCGGCCCCATCCTGGCGCTGCTAAAGGCCGGCGCGGACGTG
GACGGACGGAACCGGGAAGGGGCGTCCCCTCTCCTTTTGGCTGCGCGGGA
GGGGCACAAAGAGGCTGTCGCAGCGCTTCTTGAGGCCGGCGCCGCCCCGG
ACGCCACCACGAGGACGTTGAGGACGCCCTTGCTTACCGCCGTCGCCCAC
GGCCGCGCCGGCGTCGTGTCCCAGCTGCTGGCCGCCGGCGCATCCCCGGC
CCATGCCGATTCCTGTGGCCAGACCGTGTGGCACGCTTGCGCTGCCGCCG
GCGACGAAGCCATGGCTCGCCACCTCCTCGCCGCCGGCGTGCGGCCCGCC
GCCTCGGAGGATGCCGGCGGCGGCGGCAGCGGTACCAACGGCAGCAGAGA
CGGTGCCAGTGGCGGCAGCGGCGACGCGACCGCGGCTGGATCCAGCAGTC
TGCGCGGGCAGCATCCTCTCCACCAGGCAGCATTGGAAGGCCACGCCGGC
TTTGTCGCGTTTCTCTTTCGGGAGGGCCTCGCTGTGCCTGACACTGCTGA
TGCCGATGGCGCTACAGCGCTCTACTACGCTTCAAGCGGCGGCCACACGG
AGTGCATGGAGGTCTTGCTCGCCGTGGGTGCCGATCCGAGCCGGGCATCG
GTCCGCCGCGCCCCGCTCCATGCCTGCGCCGGCTGGCGGGCGACGGCAGG
GTCGATGGTGGCGGCTCGGTACGCTGCGTGCGTGCGGCAGCTGCTGGAGG
CCGGCGCGGATGTATGGGCACGGGACAAGGACGGCCGAACGGCGCTAGAG
GTTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7700:1473..2828+

>mRNA_P-wetherbeei_contig7700.2.1 ID=mRNA_P-wetherbeei_contig7700.2.1|Name=mRNA_P-wetherbeei_contig7700.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig7700:1473..2828+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCCGCCAAAGCCGGGGACCGAGCAGCCTGCGAGCACGCCCTAAC
TACGACTGGAAAGGATCCACGAGCATTCGTGACAGAGTGTTTTGAGAGTA
ATGGCGGGAATGCTCTCCACTACGCTGCGTCCGCGGGTAGCGCAGCTGTG
CTAGAGTATCTTCTGGACCTTGGCTGCGACGTCGATACTCACAAGCGCGA
CGCGAAAACGCCGCTGCACGAGGCCTGCAATCACGGCCAGGGAACAGCTG
TCGAGCTTCTGTTGGCACGTGGGGCAAATGTAAACGCGAAGAAGACCAAC
GACTGGAGCCCATTGCACTACGCGGCTCAACACGGCACTGTCGGCCCCAT
CCTGGCGCTGCTAAAGGCCGGCGCGGACGTGGACGGACGGAACCGGGAAG
GGGCGTCCCCTCTCCTTTTGGCTGCGCGGGAGGGGCACAAAGAGGCTGTC
GCAGCGCTTCTTGAGGCCGGCGCCGCCCCGGACGCCACCACGAGGACGTT
GAGGACGCCCTTGCTTACCGCCGTCGCCCACGGCCGCGCCGGCGTCGTGT
CCCAGCTGCTGGCCGCCGGCGCATCCCCGGCCCATGCCGATTCCTGTGGC
CAGACCGTGTGGCACGCTTGCGCTGCCGCCGGCGACGAAGCCATGGCTCG
CCACCTCCTCGCCGCCGGCGTGCGGCCCGCCGCCTCGGAGGATGCCGGCG
GCGGCGGCAGCGGTACCAACGGCAGCAGAGACGGTGCCAGTGGCGGCAGC
GGCGACGCGACCGCGGCTGGATCCAGCAGTCTGCGCGGGCAGCATCCTCT
CCACCAGGCAGCATTGGAAGGCCACGCCGGCTTTGTCGCGTTTCTCTTTC
GGGAGGGCCTCGCTGTGCCTGACACTGCTGATGCCGATGGCGCTACAGCG
CTCTACTACGCTTCAAGCGGCGGCCACACGGAGTGCATGGAGGTCTTGCT
CGCCGTGGGTGCCGATCCGAGCCGGGCATCGGTCCGCCGCGCCCCGCTCC
ATGCCTGCGCCGGCTGGCGGGCGACGGCAGGGTCGATGGTGGCGGCTCGG
TACGCTGCGTGCGTGCGGCAGCTGCTGGAGGCCGGCGCGGATGTATGGGC
ACGGGACAAGGACGGCCGAACGGCGCTAGAGGTTGCG
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