mRNA_P-wetherbeei_contig770.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig770.2.1
Unique NamemRNA_P-wetherbeei_contig770.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig770.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig770contigP-wetherbeei_contig770:2..1827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1826
Hectar predicted targeting categoryother localisation
Exons1
Cds size1077
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.5786715-UTR-P-wetherbeei_contig770:1..1111683186995.5786715-UTR-P-wetherbeei_contig770:1..111Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig770 2..111 -
1683186995.6172383-UTR-P-wetherbeei_contig770:1188..18271683186995.6172383-UTR-P-wetherbeei_contig770:1188..1827Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig770 1189..1827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186995.6041312-CDS-P-wetherbeei_contig770:111..11881683186995.6041312-CDS-P-wetherbeei_contig770:111..1188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig770 112..1188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig770.2.1prot_P-wetherbeei_contig770.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig770 112..1188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig770.2.1

>prot_P-wetherbeei_contig770.2.1 ID=prot_P-wetherbeei_contig770.2.1|Name=mRNA_P-wetherbeei_contig770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp
MAAAASGRLDVLHHLARTVPCTGWDAGVVAAAAGGGYIAVTRWLLEAGAP
CNDAEVAAAAARGGRVEILRCLRAAGRALGPPALRAALLAEQLDVADWLC
ADGGCGVVSNTSGGGEAVSSGGCCFDAVGIAAVQRAAGESGKLCALAWLK
AQGVPLAAEAAVGAAASGLVDALQYLRREGAPLTAAAMEAAAAAGHLPPM
EFLRRAGCPMEVRAALAAAGAKRGAALRYLLRSGCPVDATVFARCVAWGE
RPVISMLLDAGCSCDADAAAAAAGRNDLSLLMYLVNTAGAPMDERVCSES
MGHPDGAVLRLWAHANGLACKGCACRQPLSSSSLYPWKHGASSKVPRNKQ
QPLVAVRS*
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mRNA from alignment at P-wetherbeei_contig770:2..1827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig770.2.1 ID=mRNA_P-wetherbeei_contig770.2.1|Name=mRNA_P-wetherbeei_contig770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1826bp|location=Sequence derived from alignment at P-wetherbeei_contig770:2..1827- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTCTACACGCGGGCGTATAACGCCGCCGAACGCTCCTCATCGTCGTC
GCCGCCGCCGGCAACAGCAGCCAGTGAGAGGACTCCGTATTCAGCCGCCG
TTGAGCCTCCAGCCGCTTTCGCCGGCCCGTTGCCGACCGACGCTGCGCTC
CTGGACCACGTCTTTTCCTTCGCGGGCAAGCAAGAGTACCTCTGGATCGC
GAGCGTCTCGCAGGGATGGCGCACTGCCTGCGCATCTCGCGGCAGCGATG
GCGTCCGATGGACATCCTACACCAGTGCCGTCGCCTCCGTGGAGCGCCTC
CGCTTTGCCTTTGGCGAGGGCGAGAGGGGCGAAAGCGGCGGCAGCAGCGG
CGCGTGCACCTCCTCCTTGAGCGTCGAAAAGCTGGTGCGCGCCGCCGCCG
CCGCCGGGTCCGTCGCCGTGCTCGAGCAGCTCCGCCTTGACGGCCGGATC
CGCCCACCGGCCCGTGTCATCGTTCACGAGGCCGCCGGCGCGGGCCACGT
CGCCGTCCTTGGCTGGGCGCGCCGCCACGGCTATGCCTGGAGCATTGACC
CAGCGGCATGGGCATCGAAGCATGGCCGGCTCGCCGCGCTTGTTTTCCTT
CAGGCGTCCGGCTGCCCCTGGTCGGCCTACTCGTGCGGCATGGCCGCCGC
CGCCTCCGGCCGCCTCGACGTGCTCCACCACCTTGCGCGGACGGTGCCGT
GCACCGGCTGGGACGCCGGTGTCGTCGCCGCGGCGGCAGGAGGTGGATAC
ATCGCCGTGACGCGCTGGCTGCTGGAAGCCGGCGCGCCTTGCAACGACGC
CGAGGTCGCGGCCGCGGCGGCGCGCGGCGGCCGCGTCGAAATCCTGCGCT
GCCTCCGCGCCGCCGGTCGCGCGCTCGGCCCGCCGGCGCTGCGGGCGGCA
CTCTTGGCCGAGCAGCTCGATGTGGCCGACTGGCTCTGCGCCGACGGAGG
CTGCGGCGTCGTCAGCAATACCAGCGGCGGCGGCGAAGCCGTCAGCAGCG
GCGGTTGCTGCTTCGACGCGGTCGGCATCGCCGCCGTGCAGCGCGCTGCT
GGCGAGAGTGGCAAGCTCTGCGCGCTGGCCTGGCTCAAGGCCCAGGGCGT
GCCGCTGGCGGCTGAGGCCGCGGTTGGCGCCGCTGCCTCCGGCTTGGTCG
ACGCGCTGCAGTACCTGCGCCGCGAGGGCGCGCCGTTGACGGCGGCCGCC
ATGGAGGCGGCGGCGGCAGCCGGCCACCTGCCGCCGATGGAGTTCCTGCG
CCGCGCCGGCTGCCCGATGGAGGTGCGCGCCGCGCTGGCGGCGGCCGGAG
CCAAGCGCGGCGCGGCGTTGCGGTACTTGCTGCGGTCGGGCTGCCCCGTC
GACGCCACTGTATTTGCGCGCTGCGTCGCCTGGGGGGAGCGGCCCGTCAT
CTCTATGCTGCTCGACGCCGGCTGCTCGTGCGACGCGGACGCCGCTGCCG
CCGCCGCCGGCCGAAACGACCTCTCGTTGCTCATGTACCTGGTGAACACG
GCAGGCGCTCCGATGGATGAGCGCGTGTGCTCCGAATCGATGGGCCATCC
GGACGGCGCGGTGCTGCGTTTGTGGGCCCACGCCAACGGCCTCGCCTGCA
AAGGCTGCGCCTGTCGCCAGCCGCTGTCTTCGTCGTCGTTGTATCCGTGG
AAGCATGGGGCGTCGTCCAAGGTTCCGCGCAACAAGCAGCAGCCGCTGGT
GGCGGTGCGCTCGTGATTTGCTTTTCAAGGGCAGGAAGGGGCCCCCTTTC
TGTTTCCCCTCCACCTTTTAAAACCCGTGAGGTTAGGGGCGTTGGAACGC
CCTTTCCTCTTTGCGGGTTCAACTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig770:2..1827-

>mRNA_P-wetherbeei_contig770.2.1 ID=mRNA_P-wetherbeei_contig770.2.1|Name=mRNA_P-wetherbeei_contig770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig770:2..1827- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCGCCGCCTCCGGCCGCCTCGACGTGCTCCACCACCTTGCGCG
GACGGTGCCGTGCACCGGCTGGGACGCCGGTGTCGTCGCCGCGGCGGCAG
GAGGTGGATACATCGCCGTGACGCGCTGGCTGCTGGAAGCCGGCGCGCCT
TGCAACGACGCCGAGGTCGCGGCCGCGGCGGCGCGCGGCGGCCGCGTCGA
AATCCTGCGCTGCCTCCGCGCCGCCGGTCGCGCGCTCGGCCCGCCGGCGC
TGCGGGCGGCACTCTTGGCCGAGCAGCTCGATGTGGCCGACTGGCTCTGC
GCCGACGGAGGCTGCGGCGTCGTCAGCAATACCAGCGGCGGCGGCGAAGC
CGTCAGCAGCGGCGGTTGCTGCTTCGACGCGGTCGGCATCGCCGCCGTGC
AGCGCGCTGCTGGCGAGAGTGGCAAGCTCTGCGCGCTGGCCTGGCTCAAG
GCCCAGGGCGTGCCGCTGGCGGCTGAGGCCGCGGTTGGCGCCGCTGCCTC
CGGCTTGGTCGACGCGCTGCAGTACCTGCGCCGCGAGGGCGCGCCGTTGA
CGGCGGCCGCCATGGAGGCGGCGGCGGCAGCCGGCCACCTGCCGCCGATG
GAGTTCCTGCGCCGCGCCGGCTGCCCGATGGAGGTGCGCGCCGCGCTGGC
GGCGGCCGGAGCCAAGCGCGGCGCGGCGTTGCGGTACTTGCTGCGGTCGG
GCTGCCCCGTCGACGCCACTGTATTTGCGCGCTGCGTCGCCTGGGGGGAG
CGGCCCGTCATCTCTATGCTGCTCGACGCCGGCTGCTCGTGCGACGCGGA
CGCCGCTGCCGCCGCCGCCGGCCGAAACGACCTCTCGTTGCTCATGTACC
TGGTGAACACGGCAGGCGCTCCGATGGATGAGCGCGTGTGCTCCGAATCG
ATGGGCCATCCGGACGGCGCGGTGCTGCGTTTGTGGGCCCACGCCAACGG
CCTCGCCTGCAAAGGCTGCGCCTGTCGCCAGCCGCTGTCTTCGTCGTCGT
TGTATCCGTGGAAGCATGGGGCGTCGTCCAAGGTTCCGCGCAACAAGCAG
CAGCCGCTGGTGGCGGTGCGCTCGTGA
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