mRNA_P-wetherbeei_contig7683.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7683.1.1
Unique NamemRNA_P-wetherbeei_contig7683.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7683.1.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.690e-30
Identity = 151/357 (42.30%), Postives = 196/357 (54.90%), Query Frame = 2 
Query:   71 GITLRELKKNLQQSFERTGVLDDLMAQLRRQFVGELRSRGLAAAPPGSREAA----TGKRRRRPLG--LEEQLHNSLVADHLRRRGLSQTLAVFLPESGLGSAA--------ATGASRSGSADAAISTPEDTLRGLLVEPGSALYKRVLARIR----KVPSSTANASPENS-VDKDGGNIDENDSGNGGVPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA-----------------AQTDEAGPRAREALEARLAGVQDRWLENSRRERNAPARGAEERMLAFQREAETRARRDADTEAARRLVHEA----------AAAEAAAAARVRREVDAVRQELRAEHDARVERLQ 1003
            G +L ++K+ L+ +F  TGV+DD+ A+LRRQFV ELR +GL    PG++EAA    T +RRR P G  L+E++ +SLV DHL   GL Q+LAVFLPESGLG  +         TG   + +A+AA+S  ED L+ L +   S L++RV+ R      K   S   +  E + V       D     N  V   XXXXXXXXXXXXXXXXXXX            A                  QTDEAG   +E L  RL  V++ WL  S  ER  PA+   ERMLA+QRE E+RA   A    A RL+ +A          AA     A+  RREVDA+R+EL++++DARVERLQ
Sbjct:   47 GASLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGV--PGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESGLGGGSNCGNTATVGTGPGAAPAAEAALSR-EDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVAVXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQSQYDARVERLQ 400
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BLAST of mRNA_P-wetherbeei_contig7683.1.1 vs. uniprot
Match: A0A835Z6Y0_9STRA (LisH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.070e-11
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 2 
Query:   53 GNGDVDGITLRELKKNLQQSFERTGVLDDLMAQLRRQFVGELRSRGLAAAPPGSREAATGKRRRRPLGLEEQLHNSLVADHLRRRGLSQTLAVFLPESG 349
            G G+ D ++L EL+  L+ SF  TGVL D+ A+LRRQFV EL         P + +A    R+   L L ++   +LVAD LR +GL Q+LAVFLPESG
Sbjct:   11 GEGE-DELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHG---PPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
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BLAST of mRNA_P-wetherbeei_contig7683.1.1 vs. uniprot
Match: A0A7R9UEH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEH8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.040e-5
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   74 ITLRELKKNLQQSFERTGVLDDLMAQLRRQFVGELRSRGLAAAPPGSREAATGKRRRRPLGLEEQLHNSLVADHLRRRGLSQTLAVFLPESGL 352
            +TL EL+++L   F   GVL  + AQLRR F+  ++  G  A               R L L E    SL+ +HL+R+ L  ++AVFLPESGL
Sbjct:   40 MTLEELRESLLAHFADAGVLSSVKAQLRRHFLDSMKDLGSDAEE-------------RELNLPESAVYSLILNHLQRKNLPHSVAVFLPESGL 119
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BLAST of mRNA_P-wetherbeei_contig7683.1.1 vs. uniprot
Match: UPI0013903D70 (oral-facial-digital syndrome 1 protein homolog isoform X1 n=3 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013903D70)

HSP 1 Score: 57.8 bits (138), Expect = 7.640e-5
Identity = 84/356 (23.60%), Postives = 139/356 (39.04%), Query Frame = 2 
Query:   74 ITLRELKKNLQQSFERTGVLDDLMAQLRRQFVGELRSRGLAAAPPGSREAATGKRRRRPLGLEEQLHNSLVADHLRRRGLSQTLAVFLPESGLGSAAATGASRSGSADAAISTPEDTLRGLLVEPGSALYKRVLARIRKVPSSTA-------NASPENSVDKDGGNIDENDSGNGGVPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQTDEAGPRAREALEARLAGVQDRWLENSRRERNAPARGAEERMLAFQREAETRARRDADTEAARRLVHEAAAAEAAAAARVRREVDAVRQELRAEHDARVERLQAAVAAAEQXXXXXXXXADAAQYEARQRLLQEMDALRTRE 1120
            ++  +L++ L  +F   GV+D L +QLR + V EL+         G ++            L  Q  NSLVA+HL       TL+VFLPE G             S D   S+  D    L +EPGS LY  + + + K   S++         S  N   K G                                               A QT++ G  ++ +++ +L  +   + E + +E++A    AE+R++AFQ++ E R + +   E  R    E A        R  +E+ A +  L  ++  + E L+       +         +   Y  RQ++L+EM A+R RE
Sbjct:    6 LSREDLREKLFYTFRNRGVIDSLKSQLRNRLVLELQQTANINIASGKKKTTD------QTSLYYQAANSLVANHLENCNFEYTLSVFLPECGT------------SKDKLFSS-HDICHLLKIEPGSPLYNSLSSFLTKSSKSSSFLWELLCQLSKLNLTTKQG---------------------------------------------TIAVQTED-GCTSKTSIDEKLRSIDKVYSERAEKEQDAWNSQAEQRIIAFQQQCEERKKAELTEEIQRFKSTELARMRVEEKERYHKEITATKDMLEKDYALKAEVLRVKEKETVERLHRQEQLQEEEAYAQRQKMLEEMQAVRDRE 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7683.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGY8_ECTSI4.690e-3042.30LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z6Y0_9STRA2.070e-1146.46LisH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7R9UEH8_9STRA2.040e-538.71Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI0013903D707.640e-523.60oral-facial-digital syndrome 1 protein homolog iso... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7683contigP-wetherbeei_contig7683:857..2911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog244447.XP_008326778.1
Preferred nameOFD1
PFAMsLisH_2
Model size2055
Max annot lvl33208|Metazoa
KEGG koko:K16480
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0002009,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007275,GO:0007346,GO:0007368,GO:0007369,GO:0007389,GO:0007507,GO:0008092,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0034451,GO:0036064,GO:0042802,GO:0042995,GO:0043014,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0048513,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060026,GO:0060027,GO:0060271,GO:0060287,GO:0060429,GO:0061371,GO:0065007,GO:0070925,GO:0071840,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Exons1
Evalue4.62e-11
EggNOG OGs2CMKU@1|root,2QQR5@2759|Eukaryota,38FG9@33154|Opisthokonta,3BJGZ@33208|Metazoa,3CU8M@33213|Bilateria,480TY@7711|Chordata,4987E@7742|Vertebrata,4A0AM@7898|Actinopterygii
Ec32 ortholog descriptionLIS1 homology motif protein
Ec32 orthologEc-14_001410.1
DescriptionOral-facial-digital syndrome 1
Cds size1341
COG categoryS
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.5829043-UTR-P-wetherbeei_contig7683:856..15451683186994.5829043-UTR-P-wetherbeei_contig7683:856..1545Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7683 857..1545 -
1683186994.6090412-UTR-P-wetherbeei_contig7683:2886..29111683186994.6090412-UTR-P-wetherbeei_contig7683:2886..2911Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7683 2887..2911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.5986905-CDS-P-wetherbeei_contig7683:1545..28861683186994.5986905-CDS-P-wetherbeei_contig7683:1545..2886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7683 1546..2886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7683.1.1prot_P-wetherbeei_contig7683.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7683 1546..2886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7683.1.1

>prot_P-wetherbeei_contig7683.1.1 ID=prot_P-wetherbeei_contig7683.1.1|Name=mRNA_P-wetherbeei_contig7683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=447bp
MKGPAAGDVGNGDVDGITLRELKKNLQQSFERTGVLDDLMAQLRRQFVGE
LRSRGLAAAPPGSREAATGKRRRRPLGLEEQLHNSLVADHLRRRGLSQTL
AVFLPESGLGSAAATGASRSGSADAAISTPEDTLRGLLVEPGSALYKRVL
ARIRKVPSSTANASPENSVDKDGGNIDENDSGNGGVPSGGTAAAIPPPPT
LLTALVAEATRRSATPAASAAAQTDEAGPRAREALEARLAGVQDRWLENS
RRERNAPARGAEERMLAFQREAETRARRDADTEAARRLVHEAAAAEAAAA
ARVRREVDAVRQELRAEHDARVERLQAAVAAAEQRAAERARAADAAQYEA
RQRLLQEMDALRTREQACFLRCWFVFWLVWREDLSDCDSDFWSIGAFREL
IFVYGFLGNFFVRWFERAFSAGFRSADSVIGCLIESVWKSLLCACS*
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mRNA from alignment at P-wetherbeei_contig7683:857..2911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7683.1.1 ID=mRNA_P-wetherbeei_contig7683.1.1|Name=mRNA_P-wetherbeei_contig7683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2055bp|location=Sequence derived from alignment at P-wetherbeei_contig7683:857..2911- (Phaeothamnion wetherbeei SAG_119_79)
CAAAAACACACACCTTTTTTCAGCCATGAAGGGCCCTGCCGCTGGCGACG
TCGGCAATGGAGACGTAGATGGCATCACGTTGCGCGAGCTCAAGAAGAAC
CTGCAACAAAGCTTCGAGCGCACGGGCGTGTTGGACGACCTCATGGCGCA
ACTGCGGCGCCAATTTGTCGGCGAGCTACGGTCGCGGGGCCTCGCGGCAG
CACCACCGGGCTCCCGAGAGGCCGCGACAGGCAAGCGGCGACGGCGTCCT
CTCGGCCTCGAGGAGCAGCTGCATAACAGCCTCGTGGCGGACCACCTGCG
CCGCCGCGGCCTGTCGCAGACCCTGGCCGTGTTCCTGCCCGAAAGCGGAC
TCGGCTCGGCGGCTGCGACAGGTGCCAGTCGCAGCGGGAGCGCCGACGCC
GCGATTAGCACGCCGGAAGATACTCTGCGCGGCCTGCTAGTGGAGCCCGG
AAGCGCCCTCTACAAACGAGTGCTCGCGCGCATCCGAAAAGTGCCTTCGT
CTACCGCGAACGCCTCTCCGGAGAACAGCGTCGATAAAGACGGCGGCAAC
ATCGACGAAAATGACAGCGGCAACGGCGGCGTCCCCAGCGGCGGAACAGC
AGCAGCAATACCACCGCCGCCGACGCTGCTGACGGCGCTGGTCGCCGAGG
CGACCCGCCGCTCTGCCACGCCGGCCGCTTCCGCCGCGGCGCAGACGGAC
GAGGCCGGCCCCCGCGCTCGCGAGGCGCTTGAGGCACGGCTGGCCGGTGT
CCAGGACCGCTGGCTCGAGAATTCTCGCCGAGAGCGGAACGCGCCCGCCC
GCGGCGCGGAGGAGCGCATGCTGGCGTTCCAGCGGGAGGCGGAGACACGG
GCGCGGCGCGACGCCGACACTGAGGCAGCCAGGCGTCTCGTGCACGAAGC
GGCGGCGGCGGAGGCGGCGGCGGCGGCGCGCGTCCGGCGGGAGGTGGATG
CGGTCCGGCAGGAGCTGCGAGCGGAGCACGACGCGAGGGTCGAGCGGCTG
CAGGCGGCGGTGGCGGCGGCAGAGCAGCGGGCGGCCGAGCGGGCGCGGGC
GGCGGACGCGGCGCAGTACGAGGCGCGGCAGCGGCTGCTGCAGGAGATGG
ACGCCCTTCGGACGCGCGAGCAGGCCTGTTTTTTGCGCTGCTGGTTTGTG
TTTTGGCTGGTTTGGAGGGAAGATCTTAGCGACTGCGATAGCGATTTCTG
GAGTATTGGCGCTTTTAGAGAGCTGATTTTTGTCTACGGATTTCTTGGTA
ATTTTTTTGTGAGATGGTTTGAACGAGCGTTTTCCGCGGGGTTTAGGTCA
GCAGATTCCGTGATCGGTTGCCTCATCGAAAGCGTGTGGAAGTCATTACT
CTGTGCGTGTTCTTAGACCCTGCAATGCCACGATTTCACTTTCCACGGTT
CTCCATTCCGTTTTTGGCAGTCAGTATCACCTTACGGCTGCCCAAACGTT
ACAATTTTACGCCCAACGGGAAAAGGCAAACGCCGCGCTGAAGGAAGGCT
TGCCCGATGATGCCTGAACTTGATCTTATCTGACGCCGCGGGCTGCGGTG
ACGGGGGGCCGCGCCTGGCTAAAGTGGCACCTCCGCTGCCGGCGAGCGCG
CCACCCGTCTGGCGCAGCCTGCCGCAATGCGTGAAACCGAGATTTGAGGG
CACCCGTGGAGCCGGCATTCAATTTTGTCTCTCCCCTCTTTTTCCTTTCC
GCCGCCGTTTCTCTTTCCCTTTCTGCTTAAGCTGCTGTGTTTTGCGTCTG
GATACAGTGCTAAGTGTGGATGGTATCCTTCAGCTGCTCGTGGTCCACTC
AGCCACGGGTTCTACTAATTACTTAACACCAGAATAAATCCCCGCCGCCG
TATCACATACACAAATCACCAGTCGCGACTTTCTGCCGGCGCATCATTCG
AAGCCAGCCATTCAAACCCACAAAACCTTTAAATCCGAAACTGCCTGTCC
AAAACTGCCGTCCGTTCGCAGGACGCGCGGCGCGGCGCGGAACTGGACGC
GCGTGCCCACAAGACGGAGGCGCTGCGGCTGGCCAACCTCGCGCTGACTC
TCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7683:857..2911-

>mRNA_P-wetherbeei_contig7683.1.1 ID=mRNA_P-wetherbeei_contig7683.1.1|Name=mRNA_P-wetherbeei_contig7683.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig7683:857..2911- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCCCTGCCGCTGGCGACGTCGGCAATGGAGACGTAGATGGCAT
CACGTTGCGCGAGCTCAAGAAGAACCTGCAACAAAGCTTCGAGCGCACGG
GCGTGTTGGACGACCTCATGGCGCAACTGCGGCGCCAATTTGTCGGCGAG
CTACGGTCGCGGGGCCTCGCGGCAGCACCACCGGGCTCCCGAGAGGCCGC
GACAGGCAAGCGGCGACGGCGTCCTCTCGGCCTCGAGGAGCAGCTGCATA
ACAGCCTCGTGGCGGACCACCTGCGCCGCCGCGGCCTGTCGCAGACCCTG
GCCGTGTTCCTGCCCGAAAGCGGACTCGGCTCGGCGGCTGCGACAGGTGC
CAGTCGCAGCGGGAGCGCCGACGCCGCGATTAGCACGCCGGAAGATACTC
TGCGCGGCCTGCTAGTGGAGCCCGGAAGCGCCCTCTACAAACGAGTGCTC
GCGCGCATCCGAAAAGTGCCTTCGTCTACCGCGAACGCCTCTCCGGAGAA
CAGCGTCGATAAAGACGGCGGCAACATCGACGAAAATGACAGCGGCAACG
GCGGCGTCCCCAGCGGCGGAACAGCAGCAGCAATACCACCGCCGCCGACG
CTGCTGACGGCGCTGGTCGCCGAGGCGACCCGCCGCTCTGCCACGCCGGC
CGCTTCCGCCGCGGCGCAGACGGACGAGGCCGGCCCCCGCGCTCGCGAGG
CGCTTGAGGCACGGCTGGCCGGTGTCCAGGACCGCTGGCTCGAGAATTCT
CGCCGAGAGCGGAACGCGCCCGCCCGCGGCGCGGAGGAGCGCATGCTGGC
GTTCCAGCGGGAGGCGGAGACACGGGCGCGGCGCGACGCCGACACTGAGG
CAGCCAGGCGTCTCGTGCACGAAGCGGCGGCGGCGGAGGCGGCGGCGGCG
GCGCGCGTCCGGCGGGAGGTGGATGCGGTCCGGCAGGAGCTGCGAGCGGA
GCACGACGCGAGGGTCGAGCGGCTGCAGGCGGCGGTGGCGGCGGCAGAGC
AGCGGGCGGCCGAGCGGGCGCGGGCGGCGGACGCGGCGCAGTACGAGGCG
CGGCAGCGGCTGCTGCAGGAGATGGACGCCCTTCGGACGCGCGAGCAGGC
CTGTTTTTTGCGCTGCTGGTTTGTGTTTTGGCTGGTTTGGAGGGAAGATC
TTAGCGACTGCGATAGCGATTTCTGGAGTATTGGCGCTTTTAGAGAGCTG
ATTTTTGTCTACGGATTTCTTGGTAATTTTTTTGTGAGATGGTTTGAACG
AGCGTTTTCCGCGGGGTTTAGGTCAGCAGATTCCGTGATCGGTTGCCTCA
TCGAAAGCGTGTGGAAGTCATTACTCTGTGCGTGTTCTTAG
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