mRNA_P-wetherbeei_contig7673.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7673.3.1
Unique NamemRNA_P-wetherbeei_contig7673.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A3C0TS81_9PROT (Terpene utilization protein AtuA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS81_9PROT)

HSP 1 Score: 248 bits (633), Expect = 5.430e-77
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 1
Query:    1 MSGQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            M+ QKTIRIGGATGFWGDTGMGA QL+RDG VDYLVFDYLAEITMSIMARAR KNPEQGYALDFVSGVLRGILP+ ARQGVRIISNAGGVNPLACG+A QAL+ ELGLKLKVAV+TGDD+L RADAMR+AGV+EMFSGA MP
Sbjct:    1 MNAQKTIRIGGATGFWGDTGMGAHQLLRDGMVDYLVFDYLAEITMSIMARARAKNPEQGYALDFVSGVLRGILPQAARQGVRIISNAGGVNPLACGRAAQALVAELGLKLKVAVITGDDILPRADAMRAAGVQEMFSGAPMP 142          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A3B9BFX9_9PROT (Terpene utilization protein AtuA n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BFX9_9PROT)

HSP 1 Score: 221 bits (564), Expect = 9.990e-67
Identity = 106/142 (74.65%), Postives = 128/142 (90.14%), Query Frame = 1
Query:    1 MSGQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            M+ +KTIRIGGATGFWGDT +GAQQL++DG VDYLVFDYLAEITMSIMARAR K PE GYALDFVSGVLR ILP+ A++G++IISNAGGVN L+CG+A++AL+ ELGL LKVAVVTGDD+LD+AD +R+AG++EMF+G  MP
Sbjct:    1 MTAEKTIRIGGATGFWGDTALGAQQLIQDGAVDYLVFDYLAEITMSIMARARAKKPEAGYALDFVSGVLRTILPDAAQRGIKIISNAGGVNCLSCGQAIEALIKELGLDLKVAVVTGDDILDQADRLRAAGIREMFNGTDMP 142          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A0F0FLB1_9BURK (Terpene utilization protein AtuA n=1 Tax=Burkholderiaceae bacterium 16 TaxID=1619952 RepID=A0A0F0FLB1_9BURK)

HSP 1 Score: 186 bits (473), Expect = 2.160e-53
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    7 GQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            G++TIRIGGA+GFWGD+G+G  QLV  G VDYLVFDYLAE+TMS++A AR KNP+ GYALDFV+G LR +L     QG+RI+SNAGGVNP AC  AV+ L +ELG+ ++VAVV GDD+L + DA+R +GV++M SGA+MP
Sbjct:    8 GKETIRIGGASGFWGDSGIGPVQLVEKGKVDYLVFDYLAELTMSLLAAARLKNPDAGYALDFVTGALRAVLKPALAQGIRIVSNAGGVNPRACAAAVRKLAEELGVPVRVAVVDGDDLLPQLDALRESGVRDMQSGAAMP 147          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A2A5DA11_9BACT (Terpene utilization protein AtuA n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5DA11_9BACT)

HSP 1 Score: 184 bits (468), Expect = 9.440e-53
Identity = 89/138 (64.49%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   13 KTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            KTI IGGA+GFWGD+ + A QL+  G +DYLVFDYLAEITMSI+ARAR KN + GYALDFV+ +L+  L  +A QG+++ISNAGGVNP ACG+A++AL+ ELGL LKVA +TGDD++D+A A+R+A  KEMF+G SMP
Sbjct:    4 KTINIGGASGFWGDSNIAAPQLLASGKLDYLVFDYLAEITMSILARAREKNADHGYALDFVTTILKQHLNTIADQGIKVISNAGGVNPEACGRAIEALVAELGLDLKVATITGDDLIDQAAALRAAHSKEMFTGESMP 141          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A2E1KFW1_9PLAN (Terpene utilization protein AtuA n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KFW1_9PLAN)

HSP 1 Score: 184 bits (467), Expect = 1.200e-52
Identity = 88/138 (63.77%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   13 KTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            KTI+IG A+GFWGD+ M   QL+  G +DYLVFDYLAEITMSIMAR R KN + GYA DFVS V+R  LP++A QGV++ISNAGGVNP +CG+A++ LL++LGL L VAVVTGDD+++R + +R+ GV EMFSG  MP
Sbjct:    2 KTIKIGCASGFWGDSNMSTPQLLASGELDYLVFDYLAEITMSIMARQRAKNADYGYAHDFVSKVMRDALPDIAAQGVKVISNAGGVNPQSCGRAIEKLLEQLGLNLSVAVVTGDDLMERIEQLRAEGVTEMFSGLPMP 139          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: UPI00123F7F22 (DUF1446 domain-containing protein n=1 Tax=Pseudomonas fluorescens TaxID=294 RepID=UPI00123F7F22)

HSP 1 Score: 179 bits (454), Expect = 3.780e-52
Identity = 84/138 (60.87%), Postives = 108/138 (78.26%), Query Frame = 1
Query:   13 KTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            K +RIGGA+GFWGD+ +G  QLVR G++DYLVFDYLAE+TMSI+A AR K PE+GYA+DFV+  LR +L +   +G+RI+SNAGGVNP  C  AVQAL DELG+ +++A+V GDDVL  A AMR+AG   M++G  MP
Sbjct:   12 KLVRIGGASGFWGDSSLGPMQLVRQGDIDYLVFDYLAELTMSILAGARMKRPEEGYAIDFVTVALRSVLKQAVEKGIRIVSNAGGVNPKGCAAAVQALADELGVAVRIAIVEGDDVLPLAAAMRAAGTVGMYNGERMP 149          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A2I8F3Q4_9BURK (DUF1446 domain-containing protein n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A2I8F3Q4_9BURK)

HSP 1 Score: 182 bits (463), Expect = 5.420e-52
Identity = 88/139 (63.31%), Postives = 108/139 (77.70%), Query Frame = 1
Query:   10 QKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            +K +RIGGA+GFWGD+ +G  QLVR G +DYLVFDYLAE+TMSI+A AR K PE+GYA DFV+  LR +L +   QG+RI+SNAGGVNP  C  AVQAL DELG+K+++A+V GDDVL  A AMR+AG  EM SG  MP
Sbjct:   11 EKVVRIGGASGFWGDSSVGPVQLVRTGGIDYLVFDYLAELTMSILAGARMKRPEEGYATDFVTVALRSVLKQAREQGIRIVSNAGGVNPKGCAAAVQALADELGVKVRIAIVEGDDVLPLAAAMRAAGTLEMSSGEPMP 149          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A0C4YRX5_9BURK (3-hydroxy-3isohexenylglutaryl-CoA:acetate lyase n=5 Tax=Cupriavidus TaxID=106589 RepID=A0A0C4YRX5_9BURK)

HSP 1 Score: 182 bits (462), Expect = 8.610e-52
Identity = 86/140 (61.43%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    7 GQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            G++ +RIGGA+GFWGD+ +G  QLV  G++DYLVFDYLAE+TMS++A AR KNPE GYALDFVSG LR +L     +G+RI+SNAGGVNP AC  AV+ L +ELG+ ++VAVV GDD+L + DA+R+AG ++M SGA+MP
Sbjct:    8 GKENVRIGGASGFWGDSAIGPVQLVDKGDIDYLVFDYLAELTMSLLAAARLKNPEAGYALDFVSGALRSVLKPAMEKGIRIVSNAGGVNPRACAAAVRKLAEELGVTVRVAVVDGDDLLPQLDALRAAGTRDMQSGAAMP 147          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A3E0MX67_9PROT (Acyclic terpene utilization AtuA family protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3E0MX67_9PROT)

HSP 1 Score: 170 bits (430), Expect = 1.100e-51
Identity = 80/138 (57.97%), Postives = 105/138 (76.09%), Query Frame = 1
Query:   13 KTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            KTI+IGGATGFWG+T M   Q +R+ N+DY+VFDYLAEITMSIMARAR  +P+ GYA DFVS +++  L  +A  G+++ISNAGGVNP ACG A++A++ E GL LKV V+TGDD+L+  D + +    EMFSG + P
Sbjct:    4 KTIKIGGATGFWGETDMAMAQFLREDNLDYIVFDYLAEITMSIMARARASDPKLGYATDFVSAIVKPNLKRIASSGIKLISNAGGVNPEACGDALRAVISEAGLDLKVVVITGDDLLNDLDRLEAMNTSEMFSGDAFP 141          
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Match: A0A845QCB7_9HYPH (Acyclic terpene utilization AtuA family protein n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QCB7_9HYPH)

HSP 1 Score: 181 bits (460), Expect = 1.480e-51
Identity = 92/142 (64.79%), Postives = 110/142 (77.46%), Query Frame = 1
Query:    1 MSGQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMARARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP 426
            MSG  +IRIGGA GFWG+    A QL+R G +DYLVFDYLAEITMSIMARAR K+P QGYA DFV+GV++  LPE+A + V++ISNAGGVNP AC  AV+AL+D+ GL LKVAVV GDD+L RA  +  AG  EMFS A+ P
Sbjct:    1 MSGTSSIRIGGAGGFWGEALSAAPQLLRGGELDYLVFDYLAEITMSIMARARAKDPAQGYATDFVTGVMKPCLPEIASRDVKVISNAGGVNPRACADAVRALIDKAGLDLKVAVVEGDDLLARAQELADAGHTEMFSSAAFP 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7673.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TS81_9PROT5.430e-7787.32Terpene utilization protein AtuA n=1 Tax=Alphaprot... [more]
A0A3B9BFX9_9PROT9.990e-6774.65Terpene utilization protein AtuA n=4 Tax=Alphaprot... [more]
A0A0F0FLB1_9BURK2.160e-5363.57Terpene utilization protein AtuA n=1 Tax=Burkholde... [more]
A0A2A5DA11_9BACT9.440e-5364.49Terpene utilization protein AtuA n=1 Tax=Candidatu... [more]
A0A2E1KFW1_9PLAN1.200e-5263.77Terpene utilization protein AtuA n=1 Tax=Planctomy... [more]
UPI00123F7F223.780e-5260.87DUF1446 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A2I8F3Q4_9BURK5.420e-5263.31DUF1446 domain-containing protein n=2 Tax=Paraburk... [more]
A0A0C4YRX5_9BURK8.610e-5261.433-hydroxy-3isohexenylglutaryl-CoA:acetate lyase n=... [more]
A0A3E0MX67_9PROT1.100e-5157.97Acyclic terpene utilization AtuA family protein (F... [more]
A0A845QCB7_9HYPH1.480e-5164.79Acyclic terpene utilization AtuA family protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7673contigP-wetherbeei_contig7673:2590..3015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1218084.BBJK01000201_gene8123
PFAMsAtuA
Model size426
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.88e-53
EggNOG OGsCOG3185@1|root,COG3185@2|Bacteria,1MVR0@1224|Proteobacteria,2VJHM@28216|Betaproteobacteria,1K46N@119060|Burkholderiaceae
DescriptionPfam:DUF1446
Cds size426
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.2362044-CDS-P-wetherbeei_contig7673:2589..30151683186994.2362044-CDS-P-wetherbeei_contig7673:2589..3015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7673 2590..3015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7673.3.1prot_P-wetherbeei_contig7673.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7673 2590..3015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7673.3.1

>prot_P-wetherbeei_contig7673.3.1 ID=prot_P-wetherbeei_contig7673.3.1|Name=mRNA_P-wetherbeei_contig7673.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MSGQKTIRIGGATGFWGDTGMGAQQLVRDGNVDYLVFDYLAEITMSIMAR
ARTKNPEQGYALDFVSGVLRGILPEVARQGVRIISNAGGVNPLACGKAVQ
ALLDELGLKLKVAVVTGDDVLDRADAMRSAGVKEMFSGASMP
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mRNA from alignment at P-wetherbeei_contig7673:2590..3015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7673.3.1 ID=mRNA_P-wetherbeei_contig7673.3.1|Name=mRNA_P-wetherbeei_contig7673.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig7673:2590..3015+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGACAAAAAACCATTCGCATTGGCGGCGCCACCGGGTTTTGGGG CGATACTGGCATGGGCGCGCAGCAGCTGGTGCGCGATGGGAATGTCGATT ATCTGGTGTTCGATTATCTGGCGGAAATCACCATGTCGATCATGGCCCGT GCGCGGACGAAAAATCCGGAACAGGGATATGCGCTGGATTTCGTTTCTGG CGTGTTGCGCGGCATCCTTCCCGAAGTGGCGCGTCAGGGCGTCAGGATCA TTTCCAATGCAGGCGGTGTTAATCCACTTGCCTGCGGCAAGGCGGTGCAG GCGCTGCTGGATGAGCTGGGGTTGAAGCTGAAAGTCGCCGTGGTAACCGG CGATGACGTTCTTGACCGCGCCGACGCGATGCGCAGTGCGGGTGTGAAGG AAATGTTCAGCGGCGCATCAATGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7673:2590..3015+

>mRNA_P-wetherbeei_contig7673.3.1 ID=mRNA_P-wetherbeei_contig7673.3.1|Name=mRNA_P-wetherbeei_contig7673.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig7673:2590..3015+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGACAAAAAACCATTCGCATTGGCGGCGCCACCGGGTTTTGGGG
CGATACTGGCATGGGCGCGCAGCAGCTGGTGCGCGATGGGAATGTCGATT
ATCTGGTGTTCGATTATCTGGCGGAAATCACCATGTCGATCATGGCCCGT
GCGCGGACGAAAAATCCGGAACAGGGATATGCGCTGGATTTCGTTTCTGG
CGTGTTGCGCGGCATCCTTCCCGAAGTGGCGCGTCAGGGCGTCAGGATCA
TTTCCAATGCAGGCGGTGTTAATCCACTTGCCTGCGGCAAGGCGGTGCAG
GCGCTGCTGGATGAGCTGGGGTTGAAGCTGAAAGTCGCCGTGGTAACCGG
CGATGACGTTCTTGACCGCGCCGACGCGATGCGCAGTGCGGGTGTGAAGG
AAATGTTCAGCGGCGCATCAATGCCG
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