mRNA_P-wetherbeei_contig767.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig767.4.1
Unique NamemRNA_P-wetherbeei_contig767.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: H3GEL5_PHYRM (UBC core domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GEL5_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 5.250e-28
Identity = 48/59 (81.36%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+ALQK+PVENI+AAPLE NILEWHYVI+GT+G+PYEGG YHGKLKFPSE
Sbjct:    5 MATKRLRKEYLALQKNPVENIRAAPLEKNILEWHYVISGTEGTPYEGGFYHGKLKFPSE 63
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: A0A662YDA8_9STRA (UBC core domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDA8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.590e-28
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+ALQ+ PVENIQA PLETNILEWHYVITGT GSPYEGG+YHGKLKFP E
Sbjct:    5 MATKRLRKEYLALQRKPVENIQAVPLETNILEWHYVITGTAGSPYEGGYYHGKLKFPPE 63
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: D0NAC0_PHYIT (Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAC0_PHYIT)

HSP 1 Score: 105 bits (263), Expect = 1.670e-27
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+ALQ++PVENI+AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFP E
Sbjct:    1 MATKRLRKEYVALQRNPVENIRAAPLENNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 59
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: W2FYI4_PHYPR (UBC core domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2FYI4_PHYPR)

HSP 1 Score: 105 bits (263), Expect = 1.720e-27
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+ALQ++PVENI+AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFP E
Sbjct:    5 MATKRLRKEYLALQRNPVENIRAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 63
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: A0A3R7J076_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J076_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.230e-27
Identity = 47/59 (79.66%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+++RLRKEY+ALQ++PVENI+AAPLE NILEWHYVITGT+G+PYEGG YHGKLKFP E
Sbjct:    5 MASKRLRKEYLALQRNPVENIRAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 63
[Close]
BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: A0A662YEQ8_9STRA (UBC core domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEQ8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.220e-27
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+++RLRKEY+ALQ++PVENI AAPLE NILEWHYVI+GT+G+PYEGG YHGKLKFP E
Sbjct:    5 MASKRLRKEYLALQRNPVENIVAAPLEKNILEWHYVISGTEGTPYEGGFYHGKLKFPPE 63
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: A0A835Z275_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z275_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.880e-27
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            MSARRLR E MALQK+PVENIQA PLETNILEWHYVITGTKG+P+EGG+YHG L+FP+E
Sbjct:    4 MSARRLRHEAMALQKNPVENIQALPLETNILEWHYVITGTKGTPFEGGYYHGLLRFPAE 62
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: A0A6A4ET78_9STRA (UBC core domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ET78_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.920e-26
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFP 171
            M+ +RLRKEY+ALQK+PVENI+AAPLE NILEWHYVI+GT+G+PYEGG YHGKLKFP
Sbjct:   23 MATKRLRKEYLALQKNPVENIRAAPLEKNILEWHYVISGTEGAPYEGGFYHGKLKFP 79
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BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: G4Z768_PHYSP (UBC core domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z768_PHYSP)

HSP 1 Score: 100 bits (248), Expect = 2.090e-26
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+A+Q+ PV+ I+ APLE NILEWHYVITGTKG+PYEGG YHGKLKFP E
Sbjct:    1 MATKRLRKEYLAMQRKPVDYIRVAPLEKNILEWHYVITGTKGTPYEGGFYHGKLKFPPE 59
[Close]
BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Match: W2KBB3_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2KBB3_PHYPR)

HSP 1 Score: 103 bits (258), Expect = 3.010e-26
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHYHGKLKFPSE 177
            M+ +RLRKEY+A+Q+ PV+ IQA PLETNILEWHYVITGTKG+PYEGG YHGKLKFP E
Sbjct:    5 MATKRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPE 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig767.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GEL5_PHYRM5.250e-2881.36UBC core domain-containing protein n=1 Tax=Phytoph... [more]
A0A662YDA8_9STRA5.590e-2883.05UBC core domain-containing protein n=2 Tax=Nothoph... [more]
D0NAC0_PHYIT1.670e-2779.66Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophtho... [more]
W2FYI4_PHYPR1.720e-2779.66UBC core domain-containing protein n=10 Tax=Phytop... [more]
A0A3R7J076_9STRA2.230e-2779.66UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A662YEQ8_9STRA4.220e-2777.97UBC core domain-containing protein n=1 Tax=Nothoph... [more]
A0A835Z275_9STRA4.880e-2783.05Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6A4ET78_9STRA1.920e-2680.70UBC core domain-containing protein n=4 Tax=Phytoph... [more]
G4Z768_PHYSP2.090e-2674.58UBC core domain-containing protein n=1 Tax=Phytoph... [more]
W2KBB3_PHYPR3.010e-2677.97UBC core domain-containing protein n=12 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig767contigP-wetherbeei_contig767:4373..4733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra74102
PFAMsUQ_con
Model size180
Max annot lvl4776|Peronosporales
KEGG koko:K04554
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue8.61e-29
EggNOG OGsKOG0894@1|root,KOG0894@2759|Eukaryota,3QA3Y@4776|Peronosporales
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
Cds size180
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186994.0825386-CDS-P-wetherbeei_contig767:4372..44381683186994.0825386-CDS-P-wetherbeei_contig767:4372..4438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig767 4373..4438 +
1683186994.0925124-CDS-P-wetherbeei_contig767:4619..47331683186994.0925124-CDS-P-wetherbeei_contig767:4619..4733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig767 4620..4733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig767.4.1prot_P-wetherbeei_contig767.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig767 4373..4733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig767.4.1

>prot_P-wetherbeei_contig767.4.1 ID=prot_P-wetherbeei_contig767.4.1|Name=mRNA_P-wetherbeei_contig767.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
MSARRLRKEYMALQKDPVENIQAAPLETNILEWHYVITGTKGSPYEGGHY
HGKLKFPSE*
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mRNA from alignment at P-wetherbeei_contig767:4373..4733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig767.4.1 ID=mRNA_P-wetherbeei_contig767.4.1|Name=mRNA_P-wetherbeei_contig767.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=361bp|location=Sequence derived from alignment at P-wetherbeei_contig767:4373..4733+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCGCGACGCCTGCGAAAAGAATATATGGCCCTGCAGAAGGATCC
CGTCGAGAATATACAGGTGTGAAACACTTTCGTCGCGTTGTCGTTTCTAC
CACGGTGTCCCGCTATCCATTTCAAGCACCCCTTATTAAACACGTCGTTT
GATTGCTGCAGATTGGACTCCCTTCCTTGCCCGTGCCCTTCTTGGGCGAT
TTTGAAACACAGGGTCTTGTATCTCGCCTCACTTCACCCTGGCACAGGCG
GCACCCCTTGAAACCAACATCCTGGAGTGGCATTATGTAATTACGGGCAC
GAAGGGATCGCCGTACGAGGGCGGACACTACCATGGGAAGCTCAAGTTTC
CCTCTGAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig767:4373..4733+

>mRNA_P-wetherbeei_contig767.4.1 ID=mRNA_P-wetherbeei_contig767.4.1|Name=mRNA_P-wetherbeei_contig767.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig767:4373..4733+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCGCGACGCCTGCGAAAAGAATATATGGCCCTGCAGAAGGATCC
CGTCGAGAATATACAGGCGGCACCCCTTGAAACCAACATCCTGGAGTGGC
ATTATGTAATTACGGGCACGAAGGGATCGCCGTACGAGGGCGGACACTAC
CATGGGAAGCTCAAGTTTCCCTCTGAGTAA
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