mRNA_P-wetherbeei_contig7666.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7666.1.1
Unique NamemRNA_P-wetherbeei_contig7666.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7666.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7666contigP-wetherbeei_contig7666:45..1560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1516
Hectar predicted targeting categorysignal peptide
Exons1
Cds size831
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.8621542-UTR-P-wetherbeei_contig7666:44..3841683186993.8621542-UTR-P-wetherbeei_contig7666:44..384Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7666 45..384 +
1683186993.883135-UTR-P-wetherbeei_contig7666:1215..15601683186993.883135-UTR-P-wetherbeei_contig7666:1215..1560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7666 1216..1560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.8730729-CDS-P-wetherbeei_contig7666:384..12151683186993.8730729-CDS-P-wetherbeei_contig7666:384..1215Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7666 385..1215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7666.1.1prot_P-wetherbeei_contig7666.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7666 385..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7666.1.1

>prot_P-wetherbeei_contig7666.1.1 ID=prot_P-wetherbeei_contig7666.1.1|Name=mRNA_P-wetherbeei_contig7666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MPAAAADDQSLAATAYAGAVLLALACGGAALMSEQRKEVMWALRLIAGIA
EAATSTGSSSKGAGGAAAAAGGGGVSDADATAGNVRLFWGVSDEMMDRLV
ELINIPRIGRDALLPDDGPVVAAGVGGGSGHAVGQGARTLALSDAGVDIE
IRLSALRVLAAGTHAGGADFCRRFGMATDGVHVLWALVAGSPAALAALAN
AAAAAADPGAAYSHQQAATLTAQQAVSVLSRLCAVPALQPQFHAAQDRFL
AHATQSNPFAADLFFNRLRPVFGMAI*
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mRNA from alignment at P-wetherbeei_contig7666:45..1560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7666.1.1 ID=mRNA_P-wetherbeei_contig7666.1.1|Name=mRNA_P-wetherbeei_contig7666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1516bp|location=Sequence derived from alignment at P-wetherbeei_contig7666:45..1560+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGCTGCAGCACGTCGCGTCGCTGCTCGCCGCGCGCAATGCCGGGACCG
CCGCCGCGGCGGCTGCCGGCGACGCTGCCGCAGAGCTGTTGCTGACTCTG
CGCGGCCGACTGGAAGTGACGGGCCGCCGGCTGGTTCTGGACGACGTCTG
GCTGGAGGACACGCTCTCGTGCCTCGCGCCGCCAGGGGTTGCCGCGGCTG
CAGTGGCGGCGGCGCCGGTTTCGCTTGGGGGGGCTGCCGCGGGGGTCAGT
GGCAGTGGCAGCGACAGCAGCAGCAGCAGCGGTGGGGGAACAAGCGCCGG
CGGTGGCTACGGAAGCAGCGGCTTCAGCGGTGCTTTCACCATGCCGGCGG
CCGCGGCGGACGACCAGTCGCTGGCGGCGACCGCCTACGCCGGCGCAGTG
CTGCTGGCGCTGGCGTGCGGTGGCGCGGCGCTCATGTCGGAGCAGCGGAA
GGAGGTGATGTGGGCGCTGCGCCTCATCGCCGGCATCGCCGAAGCCGCCA
CGAGCACCGGCAGCAGCAGCAAGGGCGCCGGCGGCGCGGCCGCCGCTGCT
GGAGGTGGTGGCGTCAGTGATGCAGACGCCACGGCGGGCAACGTGCGGCT
GTTTTGGGGCGTGTCCGACGAGATGATGGACCGACTGGTTGAGCTGATCA
ACATCCCGCGGATCGGGCGTGACGCGCTCCTGCCAGACGATGGGCCAGTT
GTCGCCGCCGGAGTCGGCGGCGGCAGCGGCCACGCGGTCGGGCAGGGCGC
CCGCACGCTGGCGCTATCCGACGCTGGCGTCGATATCGAGATTCGGCTCT
CGGCGCTGCGGGTGCTGGCGGCGGGGACGCACGCCGGCGGGGCGGACTTC
TGCCGGCGGTTCGGGATGGCGACAGACGGCGTCCATGTACTCTGGGCGCT
GGTGGCAGGCTCCCCGGCGGCGCTGGCAGCGCTGGCAAACGCGGCGGCGG
CGGCGGCGGACCCCGGGGCGGCCTACAGTCACCAGCAGGCGGCGACGCTG
ACGGCACAGCAGGCGGTATCGGTGCTGTCGCGGCTCTGCGCTGTGCCGGC
GCTGCAGCCGCAGTTCCATGCGGCACAGGACCGTTTTCTTGCGCACGCCA
CGCAGAGCAATCCGTTCGCGGCCGATCTCTTCTTCAACCGGCTCAGGCCC
GTCTTTGGGATGGCCATTTGAGTGCAAGCGTCTTTGGTTGGCAGATGATG
CATAGAGATAGGGTGTCACTGGCAGCGCGTGCACGCACGCGAGGTCAGGG
AGATGGAGCGAGAAGCTGCCGACGGTGGTGTACGCACTGGCGCGTGGCGG
CAACAACAGCTAGCTGCGTGCAGATGACGAGCGAGCCGGAAATGGCTTTG
CGTTAAATGTACAGGGCTTGACAGCGCACGCCGGCTCGTAAGGGCTTTCG
ATGGGACATAGGTACCGGACGGTCTACCATGTATGTACTTTTCCTAACCT
CTTGCTTGTGGCTGCGACAATAATCGGAAATTACCATCAGTTTATCTTAT
CATAGCTAGGATGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7666:45..1560+

>mRNA_P-wetherbeei_contig7666.1.1 ID=mRNA_P-wetherbeei_contig7666.1.1|Name=mRNA_P-wetherbeei_contig7666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig7666:45..1560+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCGGCCGCGGCGGACGACCAGTCGCTGGCGGCGACCGCCTACGC
CGGCGCAGTGCTGCTGGCGCTGGCGTGCGGTGGCGCGGCGCTCATGTCGG
AGCAGCGGAAGGAGGTGATGTGGGCGCTGCGCCTCATCGCCGGCATCGCC
GAAGCCGCCACGAGCACCGGCAGCAGCAGCAAGGGCGCCGGCGGCGCGGC
CGCCGCTGCTGGAGGTGGTGGCGTCAGTGATGCAGACGCCACGGCGGGCA
ACGTGCGGCTGTTTTGGGGCGTGTCCGACGAGATGATGGACCGACTGGTT
GAGCTGATCAACATCCCGCGGATCGGGCGTGACGCGCTCCTGCCAGACGA
TGGGCCAGTTGTCGCCGCCGGAGTCGGCGGCGGCAGCGGCCACGCGGTCG
GGCAGGGCGCCCGCACGCTGGCGCTATCCGACGCTGGCGTCGATATCGAG
ATTCGGCTCTCGGCGCTGCGGGTGCTGGCGGCGGGGACGCACGCCGGCGG
GGCGGACTTCTGCCGGCGGTTCGGGATGGCGACAGACGGCGTCCATGTAC
TCTGGGCGCTGGTGGCAGGCTCCCCGGCGGCGCTGGCAGCGCTGGCAAAC
GCGGCGGCGGCGGCGGCGGACCCCGGGGCGGCCTACAGTCACCAGCAGGC
GGCGACGCTGACGGCACAGCAGGCGGTATCGGTGCTGTCGCGGCTCTGCG
CTGTGCCGGCGCTGCAGCCGCAGTTCCATGCGGCACAGGACCGTTTTCTT
GCGCACGCCACGCAGAGCAATCCGTTCGCGGCCGATCTCTTCTTCAACCG
GCTCAGGCCCGTCTTTGGGATGGCCATTTGA
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