mRNA_P-wetherbeei_contig7657.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7657.1.1
Unique NamemRNA_P-wetherbeei_contig7657.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7657.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7657contigP-wetherbeei_contig7657:163..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1148
Hectar predicted targeting categoryother localisation
Exons2
Cds size1065
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.5594742-UTR-P-wetherbeei_contig7657:162..1691683186993.5594742-UTR-P-wetherbeei_contig7657:162..169Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7657 163..169 +
1683186993.5901804-UTR-P-wetherbeei_contig7657:1506..15821683186993.5901804-UTR-P-wetherbeei_contig7657:1506..1582Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7657 1507..1582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.5701602-CDS-P-wetherbeei_contig7657:169..3041683186993.5701602-CDS-P-wetherbeei_contig7657:169..304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7657 170..304 +
1683186993.5803072-CDS-P-wetherbeei_contig7657:576..15061683186993.5803072-CDS-P-wetherbeei_contig7657:576..1506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7657 577..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7657.1.1prot_P-wetherbeei_contig7657.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7657 170..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7657.1.1

>prot_P-wetherbeei_contig7657.1.1 ID=prot_P-wetherbeei_contig7657.1.1|Name=mRNA_P-wetherbeei_contig7657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=355bp
MYYLVDPKEGRNFTTEVVTQDDLWGVKAGYAKDLCRCSISTDFTQVMAPG
YHKPQDIAAIEYGDYAFYRVWWRGRAHIAVLESFQRCVMRTPPSTERRAE
GRGRGLRSGNGDNGGGGESGIGDPNATEPITFSFCQGNRCPQDMMNSCQP
TPLIMERPHMRIPALAVLYALPGAVDADGGSGAGDERADQAALLAAQSAA
AVDAAALLLELNGKMPSLSRSWARPRVPPKGADGLPLLPTWLPPKLLLQL
VRLRMAMAGPDGGRDGAVGGGREEGSASVVDAALGLLDTVTAGAVTVGDA
VAGGTAIHRWTLGLPHADEALRPSVGDVLWQRAEAARAAGGVTPGDRSPS
GAGA*
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mRNA from alignment at P-wetherbeei_contig7657:163..1582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7657.1.1 ID=mRNA_P-wetherbeei_contig7657.1.1|Name=mRNA_P-wetherbeei_contig7657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-wetherbeei_contig7657:163..1582+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGAACATGTACTACCTCGTGGACCCGAAGGAGGGGCGAAACTTTACCA
CGGAGGTGGTGACACAGGACGACCTCTGGGGGGTCAAGGCGGGCTACGCC
AAGGACCTTTGTCGCTGCAGCATCTCAACTGACTTCACCCAGGTCTGTGG
GCAGATGGGCCGGGCGGATGGGAGGAGCGGAAGCGCGACTAGACGACCGG
TGGAGCCGCGGCAAGCAGAAGCGGTGTAGGTGGTGGCTGGGTGGCTAGCC
CAGTCGGCCGCGAGGCGGCGGTGTCGGCGCACATCGGCGCTGTCCGGCTG
GCGGACAAGCAGGGCAGGCAGATGCAGCAAATGGCGTGTCCCGGCGGAAG
GAAGTGTCTTTTCCCCGAGAGTCAGCTTCGCGCCGCTTCCCTGCTTTTGG
TTATGCTTGTGCAGGTGATGGCGCCGGGCTACCACAAGCCGCAAGATATT
GCAGCAATAGAGTACGGGGACTACGCCTTTTATCGTGTCTGGTGGCGCGG
TCGCGCGCACATCGCGGTGCTGGAATCGTTTCAGCGCTGCGTCATGCGCA
CACCGCCGTCCACGGAGAGAAGAGCGGAGGGACGGGGACGCGGCCTCCGC
AGCGGGAACGGCGATAACGGCGGCGGCGGCGAGAGCGGCATCGGCGACCC
CAACGCCACCGAGCCTATCACCTTCTCCTTTTGCCAGGGCAACCGGTGTC
CGCAAGACATGATGAATTCTTGCCAGCCGACACCGCTCATCATGGAGCGG
CCGCACATGCGGATTCCGGCGTTGGCCGTCCTCTACGCGCTCCCCGGCGC
CGTCGACGCCGACGGCGGCAGCGGCGCTGGCGACGAGAGGGCCGATCAGG
CGGCTCTTTTAGCAGCGCAGAGCGCCGCGGCAGTGGACGCGGCGGCGCTC
CTCCTGGAGCTGAACGGGAAGATGCCGTCCCTGTCGCGGTCGTGGGCGCG
GCCGCGCGTTCCCCCTAAGGGCGCCGACGGGCTGCCGCTGCTGCCGACGT
GGCTGCCGCCGAAGCTGCTGCTGCAGCTGGTCCGCCTGCGGATGGCCATG
GCCGGGCCGGACGGCGGCCGCGACGGAGCCGTCGGCGGCGGTAGGGAAGA
GGGGTCGGCAAGCGTCGTCGACGCCGCGCTGGGCCTGCTGGACACGGTCA
CGGCGGGCGCGGTGACGGTCGGCGACGCCGTCGCTGGCGGCACCGCCATA
CACCGGTGGACCCTCGGCCTGCCCCACGCCGACGAGGCACTCCGGCCGTC
CGTGGGGGATGTTCTCTGGCAGCGCGCGGAGGCGGCGAGGGCGGCGGGCG
GGGTCACCCCGGGTGACAGGAGCCCCAGCGGAGCAGGGGCGTAGCGTTAG
CGACAGCGAATCGATTGATTGAGCACAGTAAGCGGCTGGTTTACGTTTTG
TATTTCTTTATAGGGTTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7657:163..1582+

>mRNA_P-wetherbeei_contig7657.1.1 ID=mRNA_P-wetherbeei_contig7657.1.1|Name=mRNA_P-wetherbeei_contig7657.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1065bp|location=Sequence derived from alignment at P-wetherbeei_contig7657:163..1582+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACTACCTCGTGGACCCGAAGGAGGGGCGAAACTTTACCACGGAGGT
GGTGACACAGGACGACCTCTGGGGGGTCAAGGCGGGCTACGCCAAGGACC
TTTGTCGCTGCAGCATCTCAACTGACTTCACCCAGGTGATGGCGCCGGGC
TACCACAAGCCGCAAGATATTGCAGCAATAGAGTACGGGGACTACGCCTT
TTATCGTGTCTGGTGGCGCGGTCGCGCGCACATCGCGGTGCTGGAATCGT
TTCAGCGCTGCGTCATGCGCACACCGCCGTCCACGGAGAGAAGAGCGGAG
GGACGGGGACGCGGCCTCCGCAGCGGGAACGGCGATAACGGCGGCGGCGG
CGAGAGCGGCATCGGCGACCCCAACGCCACCGAGCCTATCACCTTCTCCT
TTTGCCAGGGCAACCGGTGTCCGCAAGACATGATGAATTCTTGCCAGCCG
ACACCGCTCATCATGGAGCGGCCGCACATGCGGATTCCGGCGTTGGCCGT
CCTCTACGCGCTCCCCGGCGCCGTCGACGCCGACGGCGGCAGCGGCGCTG
GCGACGAGAGGGCCGATCAGGCGGCTCTTTTAGCAGCGCAGAGCGCCGCG
GCAGTGGACGCGGCGGCGCTCCTCCTGGAGCTGAACGGGAAGATGCCGTC
CCTGTCGCGGTCGTGGGCGCGGCCGCGCGTTCCCCCTAAGGGCGCCGACG
GGCTGCCGCTGCTGCCGACGTGGCTGCCGCCGAAGCTGCTGCTGCAGCTG
GTCCGCCTGCGGATGGCCATGGCCGGGCCGGACGGCGGCCGCGACGGAGC
CGTCGGCGGCGGTAGGGAAGAGGGGTCGGCAAGCGTCGTCGACGCCGCGC
TGGGCCTGCTGGACACGGTCACGGCGGGCGCGGTGACGGTCGGCGACGCC
GTCGCTGGCGGCACCGCCATACACCGGTGGACCCTCGGCCTGCCCCACGC
CGACGAGGCACTCCGGCCGTCCGTGGGGGATGTTCTCTGGCAGCGCGCGG
AGGCGGCGAGGGCGGCGGGCGGGGTCACCCCGGGTGACAGGAGCCCCAGC
GGAGCAGGGGCGTAG
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