mRNA_P-wetherbeei_contig7649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7649.1.1
Unique NamemRNA_P-wetherbeei_contig7649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S3TVM8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TVM8_EMIHU)

HSP 1 Score: 100 bits (249), Expect = 5.780e-25
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 CKVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRGA 264
            C V+VGNLAY  +WQ LKDH +Q G+V+RADV        ++    GRS+G G+V F +P++A+ AI TLHD+DL GR  FVREDR A
Sbjct:   47 CSVYVGNLAYEVSWQDLKDHCKQVGDVVRADV--------LLENGTGRSKGCGIVVFGSPKDAKTAIDTLHDTDLKGRAIFVREDREA 126          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S0INT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INT8_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 7.350e-25
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    4 KVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDR 258
            KV+VGNL+Y TTWQ+LKDHFRQAG V  A+V         ++G  GRS+G G+V  S+P EA  AIQTL+DS+LDGR  FVREDR
Sbjct:   70 KVYVGNLSYDTTWQRLKDHFRQAGEVTFAEV---------IVGPQGRSKGCGLVTLSSPDEAALAIQTLNDSELDGRNIFVREDR 145          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A6T7KII8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7KII8_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 3.270e-24
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    7 VFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRG 261
            VFVGNLA++  W+ LK H   AG V+RADV         ++G DGRSRG+G+VE+++P+ AR+AI+TLHDS+L+GR+  VREDRG
Sbjct:   75 VFVGNLAWAVDWRALKAHMCSAGEVVRADV---------MVGEDGRSRGYGIVEYTSPRGARKAIETLHDSELEGRMVVVREDRG 150          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S4KDH2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KDH2_GUITH)

HSP 1 Score: 98.6 bits (244), Expect = 4.120e-24
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    4 KVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDR 258
            +V+VGNL++   WQ LKDH R AGNVL ADV         + G DGRS+G G+VEFS+P+EA RAIQ L++++L GR+ FVREDR
Sbjct:   56 RVYVGNLSWECKWQDLKDHMRTAGNVLHADV---------MTGPDGRSKGCGLVEFSSPEEAVRAIQELNETELMGRMIFVREDR 131          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A6T7G480_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7G480_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.500e-24
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    7 VFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRGAEAG 273
            V+VGNLAY T+WQ LKDH R AGN+++ADV         +  +DGRS+G G+V++  PQ+A RAI+ L +SDL+GR  FVREDR A +G
Sbjct:   24 VYVGNLAYETSWQDLKDHMRAAGNIVKADV---------LQMSDGRSKGCGIVQYEQPQDAARAIRELQNSDLNGRSMFVREDREAGSG 103          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: R1FPR2_EMIHU (RNA-binding protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FPR2_EMIHU)

HSP 1 Score: 103 bits (256), Expect = 5.920e-24
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 CKVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRGAEAG 273
            C V+VGNLAY  +WQ LKDH +Q G+V+RADV        ++    GRS+G G+V F +P++A+ AI TLHD+DL GR  FVREDR A AG
Sbjct:  157 CSVYVGNLAYEVSWQDLKDHCKQVGDVVRADV--------LLENGTGRSKGCGIVVFGSPKDAKTAIDTLHDTDLKGRAIFVREDREAGAG 239          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S0IME4_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IME4_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 6.090e-24
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 VFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRG 261
            VFVGNLA+S  W+ LK H R AG V RADV         +M  DGRSRG+G+VEFS+ + AR+AI TLHDS+L+GR   VREDRG
Sbjct:   34 VFVGNLAWSVEWKALKAHMRSAGEVERADV---------MMAEDGRSRGFGIVEFSSAKGARKAIATLHDSELEGRAIVVREDRG 109          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S1U1B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1B8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.820e-24
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    4 KVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDR 258
            +V+VGNLA+STTWQ+LKDH RQAG V  A V         + G DGRS+G G+VEFS+ + AR AI +L+DS L+GR  FVREDR
Sbjct:  114 RVYVGNLAFSTTWQELKDHMRQAGEVTHASV---------LQGPDGRSKGCGLVEFSSAEAARNAISSLYDSQLNGRTIFVREDR 189          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S1XRR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRR0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.000e-23
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    4 KVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDR 258
            +V+VGNLA+STTWQ+LKDH RQAG V  A V         + G DGRS+G G+VEFS+ + AR AI +L+DS L+GR  FVREDR
Sbjct:  115 RVYVGNLAFSTTWQELKDHMRQAGEVTHASV---------LQGPDGRSKGCGLVEFSSAEAARNAISSLYDSQLNGRTIFVREDR 190          
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Match: A0A7S0LIN6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LIN6_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 1.130e-23
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    4 KVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSRGWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDR-----------GAEAGPEPAALA 294
            KV+VGNL+Y TTWQ+LKDHFRQAG V+ ADV         +  + GRS+G G+V  + PQEA  AI+ L++S+LDGR  FVREDR           G+  G  PA +A
Sbjct:   43 KVYVGNLSYDTTWQRLKDHFRQAGEVVHADV---------MQESSGRSKGCGLVTLANPQEAAYAIEHLNESELDGRNIFVREDRENAMGGGLPAPGSRRGMAPAKVA 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3TVM8_EMIHU5.780e-2553.41Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S0INT8_9EUKA7.350e-2560.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6T7KII8_9EUKA3.270e-2455.29Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4KDH2_GUITH4.120e-2456.47Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A6T7G480_9STRA4.500e-2453.93Hypothetical protein n=1 Tax=Attheya septentrional... [more]
R1FPR2_EMIHU5.920e-2453.85RNA-binding protein n=1 Tax=Emiliania huxleyi TaxI... [more]
A0A7S0IME4_9EUKA6.090e-2458.82Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1U1B8_9STRA9.820e-2457.65Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XRR0_9STRA1.000e-2357.65Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0LIN6_9EUKA1.130e-2349.07Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7649contigP-wetherbeei_contig7649:1..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD35394
PFAMsRRM_1
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.7e-25
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-02_001450.1
DescriptionRNA binding
Cds size354
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186993.2656002-CDS-P-wetherbeei_contig7649:0..2341683186993.2656002-CDS-P-wetherbeei_contig7649:0..234Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7649 1..234 -
1683186993.2758858-CDS-P-wetherbeei_contig7649:422..5421683186993.2758858-CDS-P-wetherbeei_contig7649:422..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7649 423..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7649.1.1prot_P-wetherbeei_contig7649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7649 1..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7649.1.1

>prot_P-wetherbeei_contig7649.1.1 ID=prot_P-wetherbeei_contig7649.1.1|Name=mRNA_P-wetherbeei_contig7649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
CKVFVGNLAYSTTWQKLKDHFRQAGNVLRADVSRPERRRHVVMGADGRSR
GWGVVEFSAPQEARRAIQTLHDSDLDGRLAFVREDRGAEAGPEPAALAAA
AGGGGGGGGGGGGRPGMG
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mRNA from alignment at P-wetherbeei_contig7649:1..542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7649.1.1 ID=mRNA_P-wetherbeei_contig7649.1.1|Name=mRNA_P-wetherbeei_contig7649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=542bp|location=Sequence derived from alignment at P-wetherbeei_contig7649:1..542- (Phaeothamnion wetherbeei SAG_119_79)
TGCAAGGTGTTCGTGGGCAACCTGGCGTACTCGACGACGTGGCAGAAACT GAAGGACCACTTCCGGCAGGCTGGCAACGTGCTGCGCGCTGACGTGAGTC GGCCAGAGAGACGGAGGCATGTGAAAAGGTGGAGAAGGTGGTTTTCGTTC ATCTTCCTTCTCGTAAATGGTTAGGTTGAGTTCCATCTCTTGCATTTGCA GCTGGAGCCAATTTGCAGCGAAGCCGCAGCAGATTATAAAAGAGGTTAAA CTCTCCCTCCTTTTTCTTGCACCCATTTCTTCACCCTTCTCTATTCCTCT GAATCCAGGTGGTGATGGGTGCTGACGGCCGCTCCCGCGGCTGGGGCGTC GTCGAGTTCTCGGCGCCGCAGGAGGCCCGCCGCGCGATCCAGACTCTCCA CGACTCGGACCTTGACGGACGCCTGGCGTTTGTCCGCGAGGACCGCGGCG CCGAAGCTGGGCCCGAGCCGGCAGCGCTGGCGGCGGCGGCAGGCGGCGGT GGCGGGGGGGGCGGGGGCGGCGGGGGCCGGCCGGGGATGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7649:1..542-

>mRNA_P-wetherbeei_contig7649.1.1 ID=mRNA_P-wetherbeei_contig7649.1.1|Name=mRNA_P-wetherbeei_contig7649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig7649:1..542- (Phaeothamnion wetherbeei SAG_119_79)
TGCAAGGTGTTCGTGGGCAACCTGGCGTACTCGACGACGTGGCAGAAACT
GAAGGACCACTTCCGGCAGGCTGGCAACGTGCTGCGCGCTGACGTGAGTC
GGCCAGAGAGACGGAGGCATGTGGTGATGGGTGCTGACGGCCGCTCCCGC
GGCTGGGGCGTCGTCGAGTTCTCGGCGCCGCAGGAGGCCCGCCGCGCGAT
CCAGACTCTCCACGACTCGGACCTTGACGGACGCCTGGCGTTTGTCCGCG
AGGACCGCGGCGCCGAAGCTGGGCCCGAGCCGGCAGCGCTGGCGGCGGCG
GCAGGCGGCGGTGGCGGGGGGGGCGGGGGCGGCGGGGGCCGGCCGGGGAT
GGGG
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